Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.88701 * 305.70223 * 11 10 9 13 13 C 1.55157 * 111.00621 * 181.81740 * 11 10 9 14 14 C 1.54367 * 102.92161 * 206.45419 * 13 11 10 15 15 N 1.47023 * 107.29080 * 22.13997 * 14 13 11 16 16 C 1.34773 * 125.65446 * 181.12678 * 15 14 13 17 17 O 1.21602 * 120.00528 * 179.97438 * 16 15 14 18 18 C 1.47431 * 119.99647 * 359.95782 * 16 15 14 19 19 C 1.41373 * 126.40581 * 359.69303 * 18 16 15 20 20 N 1.30442 * 108.07830 * 179.81441 * 19 18 16 21 21 N 1.39935 * 108.91429 * 0.44389 * 20 19 18 22 22 C 1.39809 * 125.77724 * 179.73615 * 21 20 19 23 23 C 1.38945 * 119.68922 * 359.69920 * 22 21 20 24 24 C 1.38422 * 119.10865 * 179.73485 * 23 22 21 25 25 C 1.38788 * 118.47990 * 0.52768 * 24 23 22 26 26 C 1.38127 * 119.29855 * 359.73387 * 25 24 23 27 27 N 1.31893 * 120.83719 * 359.97438 * 26 25 24 28 28 C 1.34622 * 108.44674 * 359.71202 * 21 20 19 29 29 C 1.47431 * 108.70068 * 1.09205 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09006 * 110.71809 * 324.78767 * 13 11 10 35 35 H 1.09004 * 110.72016 * 88.06320 * 13 11 10 36 36 H 1.08997 * 109.85094 * 262.73401 * 14 13 11 37 37 H 1.09003 * 110.03326 * 141.64576 * 14 13 11 38 38 H 1.07998 * 125.95938 * 359.95925 * 19 18 16 39 39 H 1.08006 * 120.44466 * 0.02562 * 23 22 21 40 40 H 1.08005 * 120.75797 * 180.26760 * 24 23 22 41 41 H 1.08004 * 120.35336 * 179.70747 * 25 24 23 42 42 H 1.07999 * 119.58489 * 179.97438 * 26 25 24 43 43 H 1.08001 * 126.31609 * 179.97438 * 28 21 20 44 44 H 1.08999 * 110.36831 * 217.03642 * 29 15 14 45 45 H 1.08997 * 110.46279 * 94.75653 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3592 -4.7291 0.8245 13 6 1.8027 -6.1832 0.0437 14 6 0.7995 -7.1424 -0.6319 15 7 -0.0950 -6.3243 -1.4639 16 6 -1.1242 -6.7870 -2.2007 17 8 -1.8004 -6.0151 -2.8532 18 6 -1.4300 -8.2292 -2.2161 19 6 -0.7332 -9.2421 -1.5181 20 7 -1.3064 -10.3836 -1.7826 21 7 -2.3757 -10.1622 -2.6578 22 6 -3.2269 -11.1443 -3.1731 23 6 -3.0348 -12.4748 -2.8218 24 6 -3.8881 -13.4366 -3.3346 25 6 -4.9009 -13.0327 -4.1932 26 6 -5.0298 -11.6929 -4.5036 27 7 -4.2048 -10.7986 -3.9945 28 6 -2.4463 -8.8435 -2.9191 29 6 0.3199 -4.9135 -1.3579 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 2.7329 -6.1370 -0.5227 35 1 1.9917 -6.4850 1.0739 36 1 0.2211 -7.6683 0.1277 37 1 1.3317 -7.8607 -1.2556 38 1 0.1227 -9.0959 -0.8759 39 1 -2.2334 -12.7543 -2.1539 40 1 -3.7658 -14.4780 -3.0759 41 1 -5.5809 -13.7583 -4.6146 42 1 -5.8161 -11.3736 -5.1715 43 1 -3.1653 -8.3562 -3.5609 44 1 -0.5527 -4.2604 -1.3577 45 1 0.9894 -4.6507 -2.1769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662690483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = 116.265424 kcal Electronic energy + Delta-G solvation = -27947.882714 eV Core-core repulsion = 23968.304768 eV Total energy + Delta-G solvation = -3979.577946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.17302 -40.55893 -39.62899 -37.50667 -34.95683 -34.26456 -33.13029 -32.38014 -30.91221 -30.40087 -30.09482 -28.58777 -25.81138 -24.49542 -24.37423 -23.71958 -22.41348 -21.77973 -21.36046 -20.09645 -19.74404 -18.67352 -17.24029 -17.06241 -16.88651 -16.40065 -16.08909 -16.05577 -15.58396 -15.16763 -14.71302 -14.62322 -14.33187 -14.03657 -13.82843 -13.77781 -13.59951 -13.35016 -13.13969 -12.88447 -12.67306 -12.56582 -12.11775 -11.80637 -11.56660 -11.04736 -10.99004 -10.82016 -10.66561 -10.54846 -10.51946 -10.38245 -10.28254 -9.94059 -9.87631 -9.61346 -9.12946 -8.85387 -8.84387 -8.54066 -6.97200 -6.05806 -3.06048 0.07042 0.56988 1.45535 1.55014 1.81567 2.97453 3.18169 3.35889 3.54856 3.58908 3.70401 3.76469 3.93227 4.26486 4.31870 4.42016 4.48522 4.51619 4.59547 4.68922 4.72966 4.85936 4.91155 5.02525 5.11743 5.15850 5.27760 5.36619 5.40134 5.52343 5.54179 5.66185 5.82652 5.83747 5.86796 5.92687 5.95717 5.97997 6.22606 6.28198 6.42381 6.49471 6.63635 6.76520 6.82891 7.32760 7.56914 7.83956 8.24095 8.80223 9.26860 10.13254 10.27597 11.42633 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029455 B = 0.001818 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.367774 B =15396.451821 C =16203.478920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.045 4.045 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.108 4.108 12 H 0.084 0.916 13 C -0.125 4.125 14 C 0.093 3.907 15 N -0.613 5.613 16 C 0.606 3.394 17 O -0.541 6.541 18 C -0.277 4.277 19 C 0.087 3.913 20 N -0.288 5.288 21 N -0.317 5.317 22 C 0.366 3.634 23 C -0.160 4.160 24 C -0.052 4.052 25 C -0.184 4.184 26 C 0.135 3.865 27 N -0.504 5.504 28 C 0.155 3.845 29 C 0.118 3.882 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.210 0.790 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.170 0.830 43 H 0.197 0.803 44 H 0.082 0.918 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 -32.477 -5.507 33.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.243 4.243 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.465 4.465 8 H 0.082 0.918 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.164 4.164 14 C -0.030 4.030 15 N -0.346 5.346 16 C 0.395 3.605 17 O -0.418 6.418 18 C -0.291 4.291 19 C -0.102 4.102 20 N -0.105 5.105 21 N -0.092 5.092 22 C 0.139 3.861 23 C -0.182 4.182 24 C -0.078 4.078 25 C -0.205 4.205 26 C -0.023 4.023 27 N -0.217 5.217 28 C 0.009 3.991 29 C -0.003 4.003 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.226 0.774 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.187 0.813 43 H 0.214 0.786 44 H 0.100 0.900 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.291 -30.852 -5.944 32.043 hybrid contribution 0.059 -1.729 0.106 1.733 sum -6.232 -32.581 -5.838 33.681 Atomic orbital electron populations 1.70877 1.06034 1.28488 1.53371 1.25789 0.97066 1.01023 1.00406 0.83235 0.74191 0.75618 0.75800 1.21049 1.22305 1.22274 1.20010 0.91999 0.85813 1.48670 0.91756 1.42370 1.04921 1.00918 1.90781 1.20519 0.92611 0.84292 0.98309 1.22615 0.98193 0.94926 0.96974 0.89748 1.22679 0.98015 0.94346 1.01324 1.22376 0.92037 0.94704 0.93895 1.48265 1.30280 1.09506 1.46565 1.16723 0.79169 0.85789 0.78816 1.90823 1.49800 1.57831 1.43388 1.20362 1.03388 0.94962 1.10340 1.25047 0.98962 0.88797 0.97426 1.77262 0.99640 1.23543 1.10091 1.45444 1.23587 1.04714 1.35434 1.17727 0.89342 0.85772 0.93251 1.21663 1.02492 0.90932 1.03118 1.21575 0.92484 1.00142 0.93646 1.22228 1.00192 0.97729 1.00308 1.22597 0.95270 0.88683 0.95725 1.66884 1.04441 1.39975 1.10431 1.23190 0.97186 0.82878 0.95857 1.22322 0.99768 0.80702 0.97533 0.93341 0.79933 0.95902 0.95728 0.90085 0.89756 0.91097 0.91075 0.77370 0.83157 0.83621 0.83787 0.81329 0.78586 0.89995 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.79 13.70 55.49 0.76 -29.03 16 2 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 3 Si 1.08 26.33 29.92 -169.99 -5.09 21.24 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.30 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.33 -9.55 9.99 -15.06 -0.15 -9.70 16 8 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.74 -18.82 5.49 -59.91 -0.33 -19.15 16 10 C 0.17 3.33 5.71 -4.05 -0.02 3.30 16 11 C -0.11 -1.65 3.07 -88.47 -0.27 -1.92 16 12 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.13 -1.34 6.42 -24.87 -0.16 -1.50 16 14 C 0.09 0.93 4.99 -3.04 -0.02 0.91 16 15 N -0.61 -8.77 3.33 -171.75 -0.57 -9.34 16 16 C 0.61 9.64 7.85 -12.52 -0.10 9.54 16 17 O -0.54 -10.73 17.15 5.28 0.09 -10.64 16 18 C -0.28 -3.60 6.09 -105.05 -0.64 -4.24 16 19 C 0.09 0.91 10.44 -16.95 -0.18 0.73 16 20 N -0.29 -3.24 11.74 30.88 0.36 -2.88 16 21 N -0.32 -3.72 3.76 -11.74 -0.04 -3.76 16 22 C 0.37 3.74 7.54 -154.38 -1.16 2.58 16 23 C -0.16 -1.23 9.69 -39.25 -0.38 -1.61 16 24 C -0.05 -0.26 10.17 -39.31 -0.40 -0.65 16 25 C -0.18 -0.79 10.11 -39.42 -0.40 -1.19 16 26 C 0.14 0.83 11.18 -17.57 -0.20 0.63 16 27 N -0.50 -4.89 9.82 -12.29 -0.12 -5.01 16 28 C 0.16 1.95 10.86 -16.41 -0.18 1.77 16 29 C 0.12 1.97 6.23 -2.52 -0.02 1.95 16 30 H 0.26 7.98 6.77 -40.82 -0.28 7.70 16 31 H 0.37 9.59 6.46 -40.82 -0.26 9.33 16 32 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.59 6.85 -51.93 -0.36 0.23 16 37 H 0.07 0.56 6.97 -51.93 -0.36 0.20 16 38 H 0.21 1.53 4.47 -52.49 -0.23 1.30 16 39 H 0.15 1.08 7.67 -52.48 -0.40 0.68 16 40 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 41 H 0.14 0.19 8.06 -52.48 -0.42 -0.23 16 42 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.20 2.34 8.03 -52.49 -0.42 1.92 16 44 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 45 H 0.07 1.27 7.95 -51.93 -0.41 0.86 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -37.66 377.78 -9.33 -46.99 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.72 Total: 6.71 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -4.36 Total: -0.81 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: 0.06 Total: -69.18 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.09 Total: 21.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.66 -9.33 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662690483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.254 kcal (2) G-P(sol) polarization free energy of solvation -37.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds