Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.88701 * 305.70223 * 11 10 9 13 13 C 1.55157 * 111.00621 * 181.81740 * 11 10 9 14 14 C 1.54367 * 102.92161 * 206.45419 * 13 11 10 15 15 N 1.47023 * 107.29080 * 22.13997 * 14 13 11 16 16 C 1.34773 * 125.65446 * 181.12678 * 15 14 13 17 17 O 1.21602 * 120.00528 * 179.97438 * 16 15 14 18 18 C 1.47431 * 119.99647 * 359.95782 * 16 15 14 19 19 C 1.41373 * 126.40581 * 359.69303 * 18 16 15 20 20 N 1.30442 * 108.07830 * 179.81441 * 19 18 16 21 21 N 1.39935 * 108.91429 * 0.44389 * 20 19 18 22 22 C 1.39809 * 125.77724 * 179.73615 * 21 20 19 23 23 C 1.38945 * 119.68922 * 359.69920 * 22 21 20 24 24 C 1.38422 * 119.10865 * 179.73485 * 23 22 21 25 25 C 1.38788 * 118.47990 * 0.52768 * 24 23 22 26 26 C 1.38127 * 119.29855 * 359.73387 * 25 24 23 27 27 N 1.31893 * 120.83719 * 359.97438 * 26 25 24 28 28 C 1.34622 * 108.44674 * 359.71202 * 21 20 19 29 29 C 1.47431 * 108.70068 * 1.09205 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09006 * 110.71809 * 324.78767 * 13 11 10 35 35 H 1.09004 * 110.72016 * 88.06320 * 13 11 10 36 36 H 1.08997 * 109.85094 * 262.73401 * 14 13 11 37 37 H 1.09003 * 110.03326 * 141.64576 * 14 13 11 38 38 H 1.07998 * 125.95938 * 359.95925 * 19 18 16 39 39 H 1.08006 * 120.44466 * 0.02562 * 23 22 21 40 40 H 1.08005 * 120.75797 * 180.26760 * 24 23 22 41 41 H 1.08004 * 120.35336 * 179.70747 * 25 24 23 42 42 H 1.07999 * 119.58489 * 179.97438 * 26 25 24 43 43 H 1.08001 * 126.31609 * 179.97438 * 28 21 20 44 44 H 1.08999 * 110.36831 * 217.03642 * 29 15 14 45 45 H 1.08997 * 110.46279 * 94.75653 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3592 -4.7291 0.8245 13 6 1.8027 -6.1832 0.0437 14 6 0.7995 -7.1424 -0.6319 15 7 -0.0950 -6.3243 -1.4639 16 6 -1.1242 -6.7870 -2.2007 17 8 -1.8004 -6.0151 -2.8532 18 6 -1.4300 -8.2292 -2.2161 19 6 -0.7332 -9.2421 -1.5181 20 7 -1.3064 -10.3836 -1.7826 21 7 -2.3757 -10.1622 -2.6578 22 6 -3.2269 -11.1443 -3.1731 23 6 -3.0348 -12.4748 -2.8218 24 6 -3.8881 -13.4366 -3.3346 25 6 -4.9009 -13.0327 -4.1932 26 6 -5.0298 -11.6929 -4.5036 27 7 -4.2048 -10.7986 -3.9945 28 6 -2.4463 -8.8435 -2.9191 29 6 0.3199 -4.9135 -1.3579 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 2.7329 -6.1370 -0.5227 35 1 1.9917 -6.4850 1.0739 36 1 0.2211 -7.6683 0.1277 37 1 1.3317 -7.8607 -1.2556 38 1 0.1227 -9.0959 -0.8759 39 1 -2.2334 -12.7543 -2.1539 40 1 -3.7658 -14.4780 -3.0759 41 1 -5.5809 -13.7583 -4.6146 42 1 -5.8161 -11.3736 -5.1715 43 1 -3.1653 -8.3562 -3.5609 44 1 -0.5527 -4.2604 -1.3577 45 1 0.9894 -4.6507 -2.1769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662690483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = 90.617425 kcal Electronic energy + Delta-G solvation = -27948.994895 eV Core-core repulsion = 23968.304768 eV Total energy + Delta-G solvation = -3980.690127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.00305 -41.27393 -40.65212 -38.81798 -36.76232 -35.04055 -34.01744 -33.61326 -32.05303 -31.65416 -30.90710 -29.85599 -27.23385 -25.65166 -25.14262 -24.85721 -23.92639 -22.61513 -22.19478 -21.39892 -20.75003 -19.63401 -19.20670 -17.85700 -17.59053 -17.51450 -17.00954 -16.82099 -16.57820 -16.23366 -16.07420 -15.84504 -15.57451 -15.26896 -15.08239 -14.83153 -14.63303 -14.33989 -14.12557 -14.09553 -13.90904 -13.41212 -13.08402 -13.02007 -12.76656 -12.55513 -12.47007 -12.14657 -11.95353 -11.84603 -11.74907 -11.61170 -11.22594 -11.13870 -11.05285 -10.91762 -10.80282 -10.49238 -9.77784 -9.49038 -9.10602 -8.39556 -5.33369 -0.58192 0.11976 0.59492 0.80356 0.98805 1.58579 1.69513 1.84892 1.85555 2.20904 2.68306 2.72686 3.03010 3.27080 3.36018 3.42192 3.55813 3.65568 3.74794 3.83440 3.85960 3.96125 4.01036 4.04863 4.17272 4.23904 4.28451 4.36275 4.43515 4.51610 4.61345 4.66782 4.74393 4.80789 4.91750 4.95658 5.02364 5.07079 5.13908 5.18473 5.24684 5.37550 5.37837 5.59455 5.76508 6.07442 6.42959 6.48428 6.73641 7.02697 7.09593 8.00005 8.11318 9.12190 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029455 B = 0.001818 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.367774 B =15396.451821 C =16203.478920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.109 4.109 3 Si 1.130 2.870 4 H -0.295 1.295 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.334 4.334 8 H 0.071 0.929 9 N -0.760 5.760 10 C 0.169 3.831 11 C -0.098 4.098 12 H 0.077 0.923 13 C -0.111 4.111 14 C 0.085 3.915 15 N -0.610 5.610 16 C 0.601 3.399 17 O -0.597 6.597 18 C -0.291 4.291 19 C 0.099 3.901 20 N -0.292 5.292 21 N -0.315 5.315 22 C 0.323 3.677 23 C -0.164 4.164 24 C -0.048 4.048 25 C -0.165 4.165 26 C 0.120 3.880 27 N -0.536 5.536 28 C 0.147 3.853 29 C 0.122 3.878 30 H 0.241 0.759 31 H 0.358 0.642 32 H 0.024 0.976 33 H 0.035 0.965 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.243 0.757 39 H 0.152 0.848 40 H 0.182 0.818 41 H 0.183 0.817 42 H 0.193 0.807 43 H 0.190 0.810 44 H 0.040 0.960 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 -36.246 -4.910 36.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.300 4.300 3 Si 0.954 3.046 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.466 4.466 8 H 0.089 0.911 9 N -0.405 5.405 10 C 0.042 3.958 11 C -0.118 4.118 12 H 0.096 0.904 13 C -0.149 4.149 14 C -0.036 4.036 15 N -0.342 5.342 16 C 0.392 3.608 17 O -0.479 6.479 18 C -0.305 4.305 19 C -0.090 4.090 20 N -0.110 5.110 21 N -0.089 5.089 22 C 0.098 3.902 23 C -0.186 4.186 24 C -0.074 4.074 25 C -0.185 4.185 26 C -0.037 4.037 27 N -0.250 5.250 28 C -0.001 4.001 29 C -0.001 4.001 30 H 0.052 0.948 31 H 0.190 0.810 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.259 0.741 39 H 0.170 0.830 40 H 0.199 0.801 41 H 0.200 0.800 42 H 0.210 0.790 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.913 -34.728 -5.322 35.475 hybrid contribution -0.438 -0.750 -0.167 0.885 sum -5.351 -35.478 -5.489 36.296 Atomic orbital electron populations 1.70998 1.07339 1.27744 1.56431 1.27303 0.97084 1.04969 1.00629 0.82609 0.73324 0.71357 0.77265 1.22168 1.19935 1.20378 1.20432 0.92542 0.87100 1.46485 0.91081 1.42657 1.04787 1.02299 1.90742 1.20713 0.93286 0.83368 0.98419 1.22432 0.97564 0.96275 0.95519 0.90443 1.22713 0.97843 0.90716 1.03601 1.22770 0.91712 0.94601 0.94473 1.48292 1.30409 1.08949 1.46549 1.17178 0.78790 0.86721 0.78121 1.90781 1.51845 1.59400 1.45876 1.20103 1.04709 0.93590 1.12131 1.25444 0.99218 0.87359 0.96940 1.77221 0.99679 1.23867 1.10191 1.45624 1.23688 1.04532 1.35050 1.18072 0.90485 0.86362 0.95298 1.21842 1.03166 0.90368 1.03260 1.22047 0.91455 1.01202 0.92680 1.22688 0.99724 0.97480 0.98561 1.23192 0.95212 0.89476 0.95859 1.66835 1.05199 1.41785 1.11145 1.23170 0.97219 0.83777 0.95961 1.22072 0.97987 0.81885 0.98185 0.94832 0.81042 0.95772 0.94671 0.88948 0.86667 0.88373 0.87814 0.74135 0.83036 0.80099 0.79960 0.79030 0.79305 0.94099 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.86 13.70 21.65 0.30 -63.56 16 2 C -0.11 -6.55 5.50 84.86 0.47 -6.08 16 3 Si 1.13 53.29 29.92 68.60 2.05 55.34 16 4 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.33 -19.29 9.99 84.03 0.84 -18.45 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.76 -39.43 5.49 -343.47 -1.89 -41.31 16 10 C 0.17 6.52 5.71 86.38 0.49 7.01 16 11 C -0.10 -2.97 3.07 -9.40 -0.03 -2.99 16 12 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.11 -2.00 6.42 31.80 0.20 -1.80 16 14 C 0.09 1.45 4.99 86.74 0.43 1.88 16 15 N -0.61 -17.53 3.33 -815.56 -2.71 -20.24 16 16 C 0.60 19.99 7.85 86.67 0.68 20.67 16 17 O -0.60 -25.73 17.15 -4.04 -0.07 -25.80 16 18 C -0.29 -7.68 6.09 -20.14 -0.12 -7.81 16 19 C 0.10 1.91 10.44 85.67 0.89 2.81 16 20 N -0.29 -6.25 11.74 -56.22 -0.66 -6.91 16 21 N -0.32 -7.46 3.76 -191.05 -0.72 -8.18 16 22 C 0.32 6.58 7.54 132.77 1.00 7.59 16 23 C -0.16 -2.29 9.69 22.48 0.22 -2.07 16 24 C -0.05 -0.32 10.17 22.45 0.23 -0.09 16 25 C -0.16 -0.87 10.11 22.38 0.23 -0.65 16 26 C 0.12 1.29 11.18 84.66 0.95 2.24 16 27 N -0.54 -10.46 9.82 -192.80 -1.89 -12.35 16 28 C 0.15 3.90 10.86 84.21 0.91 4.81 16 29 C 0.12 4.24 6.23 86.86 0.54 4.78 16 30 H 0.24 15.88 6.77 -92.71 -0.63 15.26 16 31 H 0.36 19.69 6.46 -92.71 -0.60 19.09 16 32 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.53 8.04 -2.38 -0.02 1.51 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.21 6.85 -2.39 -0.02 1.19 16 37 H 0.10 1.18 6.97 -2.39 -0.02 1.16 16 38 H 0.24 2.62 4.47 -2.91 -0.01 2.60 16 39 H 0.15 1.97 7.67 -2.91 -0.02 1.94 16 40 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.18 -0.43 8.06 -2.91 -0.02 -0.46 16 42 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.19 5.07 8.03 -2.91 -0.02 5.05 16 44 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 45 H 0.06 2.20 7.95 -2.39 -0.02 2.18 16 Total: -1.00 -88.24 377.78 2.92 -85.33 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.57 Total: 25.84 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 7.93 Total: 11.84 kcal Atomic # 7 Polarization: -144.98 SS G_CDS: -7.58 Total: -152.55 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.07 Total: -25.80 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 2.05 Total: 55.34 kcal Total: -88.24 2.92 -85.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662690483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.945 kcal (2) G-P(sol) polarization free energy of solvation -88.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds