Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99707 * 2 1 4 4 H 1.48496 * 109.47276 * 269.99570 * 3 2 1 5 5 H 1.48496 * 109.47432 * 30.00220 * 3 2 1 6 6 H 1.48501 * 109.47009 * 149.99690 * 3 2 1 7 7 C 1.38807 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99955 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00277 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00155 * 173.68827 * 9 7 2 11 11 C 1.53000 * 110.01564 * 62.76880 * 10 9 7 12 12 N 1.46497 * 109.47297 * 55.23166 * 11 10 9 13 13 C 1.34771 * 120.00233 * 175.30317 * 12 11 10 14 14 O 1.21553 * 119.99823 * 0.02562 * 13 12 11 15 15 C 1.47840 * 120.00414 * 180.02562 * 13 12 11 16 16 C 1.40599 * 120.27939 * 0.02562 * 15 13 12 17 17 N 1.30822 * 121.52336 * 179.97438 * 16 15 13 18 18 C 1.33755 * 121.79820 * 359.96191 * 17 16 15 19 19 N 1.33884 * 120.62787 * 180.02562 * 18 17 16 20 20 C 1.31328 * 119.84952 * 180.02562 * 19 18 17 21 21 C 1.39763 * 120.78041 * 359.97438 * 20 19 18 22 22 N 1.31310 * 120.54816 * 0.32596 * 21 20 19 23 23 C 1.33673 * 119.70091 * 359.40370 * 22 21 20 24 24 C 1.38908 * 120.28021 * 180.02562 * 15 13 12 25 25 C 1.54269 * 110.06983 * 184.18561 * 10 9 7 26 26 C 1.54894 * 104.19573 * 95.69910 * 25 10 9 27 27 C 1.54890 * 102.74819 * 37.94013 * 26 25 10 28 28 C 1.53873 * 110.03217 * 301.37322 * 10 9 7 29 29 H 0.96999 * 119.99986 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00123 * 353.68980 * 9 7 2 31 31 H 1.08998 * 109.46669 * 295.23199 * 11 10 9 32 32 H 1.08998 * 109.46883 * 175.23517 * 11 10 9 33 33 H 0.97003 * 119.99992 * 355.31138 * 12 11 10 34 34 H 1.08001 * 119.23501 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.61591 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.72751 * 180.02562 * 21 20 19 37 37 H 1.07992 * 120.99690 * 0.02562 * 24 15 13 38 38 H 1.08999 * 110.48242 * 214.37026 * 25 10 9 39 39 H 1.08993 * 110.49238 * 337.01821 * 25 10 9 40 40 H 1.08995 * 110.75454 * 279.62662 * 26 25 10 41 41 H 1.08997 * 110.75779 * 156.25247 * 26 25 10 42 42 H 1.08998 * 110.48466 * 203.38309 * 27 26 25 43 43 H 1.08996 * 110.48996 * 80.73871 * 27 26 25 44 44 H 1.09001 * 110.03538 * 359.95699 * 28 10 9 45 45 H 1.09004 * 110.03169 * 121.37756 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4631 0.1411 11 6 3.8047 -3.3816 -1.0433 12 7 4.1037 -2.6813 -2.2948 13 6 3.9990 -3.3298 -3.4716 14 8 3.6559 -4.4957 -3.4945 15 6 4.3013 -2.6233 -4.7345 16 6 4.6991 -1.2750 -4.7149 17 7 4.9729 -0.6264 -5.8176 18 6 4.8898 -1.2106 -7.0179 19 7 5.1760 -0.5247 -8.1316 20 6 5.0888 -1.1133 -9.3023 21 6 4.7001 -2.4521 -9.4026 22 7 4.4084 -3.1448 -8.3259 23 6 4.4956 -2.5678 -7.1233 24 6 4.1947 -3.2861 -5.9507 25 6 5.6283 -2.1889 0.2177 26 6 5.9324 -2.1578 1.7362 27 6 5.0168 -3.2770 2.2912 28 6 3.7234 -3.1549 1.4595 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3671 -0.0913 31 1 2.7506 -3.6581 -1.0245 32 1 4.4174 -4.2805 -0.9745 33 1 4.3773 -1.7508 -2.2765 34 1 4.7805 -0.7628 -3.7675 35 1 5.3210 -0.5566 -10.1982 36 1 4.6344 -2.9193 -10.3741 37 1 3.8909 -4.3215 -5.9951 38 1 6.1858 -2.9906 -0.2666 39 1 5.8658 -1.2281 -0.2387 40 1 5.6644 -1.1918 2.1641 41 1 6.9811 -2.3875 1.9249 42 1 4.8080 -3.1102 3.3479 43 1 5.4756 -4.2544 2.1417 44 1 2.9903 -2.5520 1.9955 45 1 3.3156 -4.1450 1.2555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666767490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = 64.274400 kcal Electronic energy + Delta-G solvation = -29291.482527 eV Core-core repulsion = 25309.650081 eV Total energy + Delta-G solvation = -3981.832446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.97152 -39.94799 -38.68109 -37.89325 -35.32507 -34.39359 -33.48048 -32.22150 -31.61891 -30.93385 -28.53895 -28.38758 -26.39790 -25.45215 -24.27357 -23.08801 -22.91504 -21.52680 -20.45348 -19.46835 -18.97247 -18.33953 -17.93305 -17.65339 -16.74583 -15.98463 -15.88051 -15.44730 -15.21862 -14.97093 -14.84053 -14.67861 -14.24375 -14.01856 -13.59630 -13.27406 -13.12464 -12.99249 -12.97574 -12.63810 -12.31500 -12.06901 -12.02981 -11.98623 -11.29663 -11.03332 -10.93621 -10.83018 -10.70801 -10.61151 -10.42393 -10.19143 -10.04574 -9.91443 -9.63695 -9.62419 -9.49250 -9.07634 -9.00236 -8.69402 -7.40098 -5.84622 -3.23173 -0.38899 -0.08811 1.43657 2.11681 3.09024 3.15613 3.22423 3.30372 3.32225 3.40806 3.66374 3.73337 3.75141 4.25828 4.33469 4.47912 4.50729 4.64285 4.68491 4.91215 4.92651 4.98071 4.99826 5.23698 5.33552 5.46812 5.52201 5.59451 5.64276 5.80908 5.83632 5.94965 5.99076 6.01377 6.07845 6.17983 6.27527 6.39869 6.47582 6.53662 6.58576 6.68225 6.73764 7.00683 7.08900 7.57703 7.70245 7.92349 8.30939 8.34833 9.10535 9.82332 10.00478 11.32963 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.003274 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.604791 B = 8550.948706 C = 9677.671433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.738 5.738 10 C 0.193 3.807 11 C 0.118 3.882 12 N -0.691 5.691 13 C 0.559 3.441 14 O -0.538 6.538 15 C -0.168 4.168 16 C 0.196 3.804 17 N -0.455 5.455 18 C 0.271 3.729 19 N -0.418 5.418 20 C 0.110 3.890 21 C 0.070 3.930 22 N -0.405 5.405 23 C 0.018 3.982 24 C 0.036 3.964 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.128 4.128 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.400 0.600 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.167 0.833 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.218 -5.225 -12.216 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.185 4.185 3 Si 0.706 3.294 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.102 3.898 11 C -0.007 4.007 12 N -0.341 5.341 13 C 0.343 3.657 14 O -0.417 6.417 15 C -0.175 4.175 16 C 0.019 3.981 17 N -0.164 5.164 18 C 0.031 3.969 19 N -0.132 5.132 20 C -0.069 4.069 21 C -0.107 4.107 22 N -0.119 5.119 23 C -0.108 4.108 24 C 0.008 3.992 25 C -0.166 4.166 26 C -0.158 4.158 27 C -0.159 4.159 28 C -0.168 4.168 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.194 0.806 35 H 0.201 0.799 36 H 0.200 0.800 37 H 0.184 0.816 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.941 -5.204 -11.976 19.101 hybrid contribution 0.202 1.021 -0.161 1.053 sum 14.143 -4.183 -12.137 19.100 Atomic orbital electron populations 1.69694 1.05173 1.25868 1.56763 1.24680 0.95106 0.97056 1.01689 0.86695 0.79486 0.85375 0.77848 1.21028 1.21833 1.20054 1.18926 0.80324 0.94604 1.43513 0.89043 1.42935 1.04102 1.02297 1.88804 1.20427 0.90061 0.87263 0.92079 1.22057 1.01545 0.94508 0.82611 1.45681 1.67196 1.15510 1.05683 1.17722 0.78554 0.86365 0.83030 1.90780 1.47713 1.16169 1.87040 1.21288 1.04751 0.96070 0.95422 1.23398 0.88053 0.89854 0.96833 1.67499 1.15312 1.37056 0.96542 1.20104 0.95918 0.88453 0.92378 1.68331 1.11103 1.36351 0.97458 1.24324 0.92759 0.93654 0.96192 1.24222 0.95038 0.92865 0.98551 1.68605 1.09175 1.36469 0.97662 1.20208 1.03026 0.93824 0.93718 1.21785 0.88463 1.00830 0.88146 1.22650 0.95736 1.01352 0.96818 1.22424 0.98466 0.99417 0.95474 1.22325 0.96350 0.97961 0.99276 1.22605 0.97512 1.00406 0.96264 0.93009 0.80583 0.90863 0.91918 0.76382 0.80617 0.79904 0.80018 0.81578 0.91269 0.91768 0.91450 0.92372 0.92251 0.92381 0.89481 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.97 55.49 0.78 -27.05 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 20.55 27.68 -169.99 -4.70 15.85 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -5.98 6.61 56.52 0.37 -5.61 16 7 C -0.24 -6.11 8.96 -15.06 -0.13 -6.25 16 8 H 0.09 2.53 7.55 -52.49 -0.40 2.14 16 9 N -0.74 -14.73 4.32 -46.20 -0.20 -14.93 16 10 C 0.19 3.13 0.68 -130.70 -0.09 3.04 16 11 C 0.12 1.94 4.06 -4.04 -0.02 1.92 16 12 N -0.69 -10.60 5.18 -61.26 -0.32 -10.92 16 13 C 0.56 8.90 7.78 -12.33 -0.10 8.80 16 14 O -0.54 -10.08 16.38 5.32 0.09 -9.99 16 15 C -0.17 -2.34 5.88 -104.83 -0.62 -2.96 16 16 C 0.20 2.63 10.69 -17.09 -0.18 2.44 16 17 N -0.46 -6.84 10.39 -12.28 -0.13 -6.97 16 18 C 0.27 3.90 7.60 -157.61 -1.20 2.70 16 19 N -0.42 -5.33 10.55 -12.39 -0.13 -5.46 16 20 C 0.11 0.87 11.21 -17.20 -0.19 0.68 16 21 C 0.07 0.53 11.22 -17.20 -0.19 0.34 16 22 N -0.40 -4.64 10.46 -10.77 -0.11 -4.75 16 23 C 0.02 0.25 6.59 -84.78 -0.56 -0.31 16 24 C 0.04 0.48 9.68 -38.38 -0.37 0.11 16 25 C -0.13 -1.68 5.73 -25.07 -0.14 -1.82 16 26 C -0.12 -1.52 6.91 -24.74 -0.17 -1.69 16 27 C -0.12 -1.59 6.83 -25.07 -0.17 -1.76 16 28 C -0.13 -2.05 5.92 -25.61 -0.15 -2.21 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.36 7.10 5.38 -40.82 -0.22 6.88 16 31 H 0.07 1.42 7.52 -51.93 -0.39 1.03 16 32 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16 33 H 0.40 5.62 6.02 -40.82 -0.25 5.37 16 34 H 0.18 1.97 6.38 -52.49 -0.33 1.63 16 35 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.17 2.13 7.70 -52.49 -0.40 1.72 16 38 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 39 H 0.06 0.81 7.71 -51.93 -0.40 0.41 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.66 7.32 -51.93 -0.38 1.28 16 45 H 0.06 0.87 7.67 -51.93 -0.40 0.47 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -34.15 371.07 -9.21 -43.36 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.69 Total: 12.03 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -4.38 Total: 3.24 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -0.11 Total: -70.08 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.70 Total: 15.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.15 -9.21 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666767490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.636 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds