Wall clock time and date at job start Sat Apr 11 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86794 * 120.00631 * 2 1 4 4 H 1.48500 * 109.47595 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47067 * 300.00373 * 3 2 1 6 6 H 1.48505 * 109.46928 * 59.99663 * 3 2 1 7 7 C 1.40034 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00012 * 170.10403 * 7 2 1 9 9 C 1.41550 * 119.99833 * 350.11068 * 7 2 1 10 10 C 1.41160 * 120.99582 * 153.79387 * 9 7 2 11 11 C 1.36589 * 119.12658 * 180.02562 * 10 9 7 12 12 N 1.32065 * 121.26146 * 0.02562 * 11 10 9 13 13 C 1.32495 * 122.22739 * 359.65763 * 12 11 10 14 14 N 1.39455 * 119.65157 * 180.32145 * 13 12 11 15 15 C 1.34775 * 120.00101 * 5.66783 * 14 13 12 16 16 O 1.21583 * 119.99860 * 5.06444 * 15 14 13 17 17 N 1.34776 * 120.00231 * 185.06533 * 15 14 13 18 18 C 1.46504 * 119.99671 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47004 * 179.97438 * 18 17 15 20 20 C 1.52993 * 109.47456 * 179.97438 * 19 18 17 21 21 N 1.46498 * 109.47573 * 179.97438 * 20 19 18 22 22 C 1.38998 * 120.00728 * 179.97438 * 21 20 19 23 23 C 1.39149 * 119.70158 * 359.72968 * 22 21 20 24 24 C 1.38297 * 119.09480 * 179.75063 * 23 22 21 25 25 C 1.38879 * 118.50410 * 0.51333 * 24 23 22 26 26 C 1.38019 * 119.33450 * 359.72867 * 25 24 23 27 27 N 1.31976 * 120.85603 * 0.02562 * 26 25 24 28 28 C 1.38646 * 120.70098 * 0.63151 * 13 12 11 29 29 H 0.97006 * 119.99686 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43978 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.37253 * 180.02562 * 11 10 9 32 32 H 0.97002 * 120.00252 * 185.67620 * 14 13 12 33 33 H 0.96993 * 120.00327 * 359.97438 * 17 15 14 34 34 H 1.09003 * 109.47135 * 299.99459 * 18 17 15 35 35 H 1.08997 * 109.47418 * 60.00233 * 18 17 15 36 36 H 1.09009 * 109.47149 * 299.99752 * 19 18 17 37 37 H 1.09001 * 109.47132 * 59.99207 * 19 18 17 38 38 H 1.08996 * 109.47191 * 300.00043 * 20 19 18 39 39 H 1.08999 * 109.46999 * 59.99624 * 20 19 18 40 40 H 0.97003 * 119.99495 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.44906 * 359.97438 * 23 22 21 42 42 H 1.08002 * 120.74682 * 180.26186 * 24 23 22 43 43 H 1.08006 * 120.33365 * 179.70904 * 25 24 23 44 44 H 1.08004 * 119.57691 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.66382 * 179.68680 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0754 -1.2198 -0.1602 9 6 1.3154 -2.4294 0.2116 10 6 1.8138 -3.6472 -0.2993 11 6 1.1146 -4.7987 -0.0734 12 7 -0.0146 -4.7916 0.6114 13 6 -0.5260 -3.6799 1.1193 14 7 -1.7189 -3.7355 1.8395 15 6 -2.2856 -4.9271 2.1138 16 8 -1.7117 -5.9564 1.8148 17 7 -3.4885 -4.9778 2.7197 18 6 -4.1041 -6.2732 3.0183 19 6 -5.4547 -6.0505 3.7018 20 6 -6.0980 -7.4033 4.0132 21 7 -7.3910 -7.1901 4.6682 22 6 -8.1659 -8.2797 5.0480 23 6 -7.7101 -9.5705 4.7980 24 6 -8.4889 -10.6455 5.1859 25 6 -9.7069 -10.3930 5.8034 26 6 -10.0994 -9.0869 6.0157 27 7 -9.3335 -8.0802 5.6394 28 6 0.1089 -2.4609 0.9370 29 1 -0.4850 0.8401 0.0004 30 1 2.7356 -3.6684 -0.8615 31 1 1.4924 -5.7328 -0.4622 32 1 -2.1409 -2.9164 2.1429 33 1 -3.9462 -4.1567 2.9586 34 1 -4.2526 -6.8273 2.0914 35 1 -3.4514 -6.8416 3.6809 36 1 -5.3059 -5.4966 4.6288 37 1 -6.1076 -5.4818 3.0397 38 1 -6.2469 -7.9568 3.0861 39 1 -5.4452 -7.9723 4.6751 40 1 -7.7066 -6.2884 4.8361 41 1 -6.7596 -9.7305 4.3110 42 1 -8.1591 -11.6586 5.0088 43 1 -10.3408 -11.2104 6.1142 44 1 -11.0457 -8.8860 6.4960 45 1 -0.3111 -1.5543 1.3471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673549576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:23 Heat of formation + Delta-G solvation = 49.099534 kcal Electronic energy + Delta-G solvation = -26855.052256 eV Core-core repulsion = 22872.561779 eV Total energy + Delta-G solvation = -3982.490478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45359 -39.82277 -38.15391 -37.04620 -34.99551 -34.20688 -33.73359 -32.76005 -31.82533 -30.49886 -29.49212 -28.37378 -26.02517 -25.57476 -23.92795 -22.63898 -21.99489 -21.87716 -21.52371 -20.06644 -18.25768 -17.76080 -17.68212 -17.05668 -16.26163 -16.23525 -15.90993 -15.40549 -15.03580 -15.01405 -14.66077 -14.34961 -14.26034 -14.18236 -14.14312 -13.44954 -13.32585 -13.22779 -12.88262 -12.61107 -12.34394 -12.25731 -12.24553 -11.80455 -11.54942 -11.41877 -11.19700 -10.91771 -10.58483 -10.28713 -10.11786 -10.04368 -9.77186 -9.75825 -9.61467 -9.40679 -8.87104 -8.06394 -7.97819 -7.73367 -7.03575 -6.75322 -4.63497 0.98141 1.15212 2.64552 2.68486 2.79201 3.01073 3.06493 3.08061 3.23310 3.63479 3.83482 3.85578 4.30403 4.39803 4.52632 4.56315 4.65631 4.69160 4.72049 4.83700 4.93606 5.05931 5.14946 5.24824 5.41105 5.43495 5.68620 5.70427 5.77021 5.78937 5.96494 5.99016 6.23101 6.53032 6.58767 6.63331 6.67814 6.79769 6.94379 7.13129 7.20563 7.26292 7.42101 7.48574 7.86271 7.86879 8.10287 8.36766 8.45946 8.72250 8.75697 9.14965 9.71751 10.08689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.001489 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.640870 B =18803.686204 C =19758.450412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.143 3.857 10 C -0.282 4.282 11 C 0.119 3.881 12 N -0.553 5.553 13 C 0.353 3.647 14 N -0.668 5.668 15 C 0.692 3.308 16 O -0.534 6.534 17 N -0.756 5.756 18 C 0.147 3.853 19 C -0.142 4.142 20 C 0.131 3.869 21 N -0.725 5.725 22 C 0.403 3.597 23 C -0.240 4.240 24 C -0.034 4.034 25 C -0.239 4.239 26 C 0.147 3.853 27 N -0.548 5.548 28 C -0.242 4.242 29 H 0.280 0.720 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.404 0.596 33 H 0.392 0.608 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.405 0.595 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.154 0.846 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.486 -11.008 10.572 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.134 3.866 10 C -0.306 4.306 11 C -0.035 4.035 12 N -0.272 5.272 13 C 0.127 3.873 14 N -0.316 5.316 15 C 0.391 3.609 16 O -0.405 6.405 17 N -0.414 5.414 18 C 0.021 3.979 19 C -0.181 4.181 20 C 0.006 3.994 21 N -0.358 5.358 22 C 0.167 3.833 23 C -0.265 4.265 24 C -0.060 4.060 25 C -0.262 4.262 26 C -0.010 4.010 27 N -0.266 5.266 28 C -0.268 4.268 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.225 0.775 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.240 0.760 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.171 0.829 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.705 -11.872 10.464 23.747 hybrid contribution 0.411 1.933 -0.031 1.976 sum -17.294 -9.939 10.434 22.511 Atomic orbital electron populations 1.69754 1.07577 1.29021 1.35845 1.25945 0.94871 1.01441 0.92018 0.86163 0.80874 0.80555 0.78568 1.18335 1.19893 1.19725 1.19621 0.95878 0.89996 1.43003 0.90011 1.17588 0.90322 0.92292 0.86395 1.21692 1.04216 0.94510 1.10181 1.21471 0.90618 0.96574 0.94849 1.67172 1.14804 1.28193 1.17029 1.17973 0.85741 0.90889 0.92700 1.42551 1.24385 1.07448 1.57181 1.16060 0.80805 0.84745 0.79247 1.91010 1.62251 1.31983 1.55244 1.45131 1.20687 1.08760 1.66843 1.20893 0.91736 0.85235 1.00021 1.21940 0.96796 0.97304 1.02031 1.21267 0.83263 0.97484 0.97381 1.44471 1.19678 1.06525 1.65096 1.18369 0.88183 0.87003 0.89725 1.21459 1.03513 0.91787 1.09695 1.21346 0.92990 0.98924 0.92714 1.21817 0.99069 0.98266 1.07051 1.22386 0.97284 0.87895 0.93474 1.67155 1.05505 1.36791 1.17149 1.21622 1.01085 0.95381 1.08718 0.90916 0.88002 0.86009 0.76127 0.77508 0.91391 0.91460 0.90374 0.90348 0.91294 0.91318 0.75950 0.84995 0.85055 0.85250 0.82915 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.39 10.70 55.55 0.59 -18.80 16 2 C 0.08 1.80 5.31 -17.34 -0.09 1.70 16 3 Si 0.91 17.84 29.57 -169.99 -5.03 12.81 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.45 -11.60 9.14 -37.65 -0.34 -11.94 16 8 H 0.08 2.01 7.87 -52.49 -0.41 1.59 16 9 C 0.14 3.74 5.60 -106.55 -0.60 3.14 16 10 C -0.28 -6.93 9.85 -39.07 -0.38 -7.31 16 11 C 0.12 2.87 11.10 -18.05 -0.20 2.67 16 12 N -0.55 -14.24 7.90 -12.76 -0.10 -14.34 16 13 C 0.35 8.58 7.41 -154.68 -1.15 7.44 16 14 N -0.67 -13.03 5.40 -15.86 -0.09 -13.12 16 15 C 0.69 13.05 8.51 -86.92 -0.74 12.31 16 16 O -0.53 -12.48 14.64 5.29 0.08 -12.40 16 17 N -0.76 -9.58 5.56 -65.22 -0.36 -9.94 16 18 C 0.15 1.51 5.67 -4.04 -0.02 1.49 16 19 C -0.14 -0.94 5.44 -26.73 -0.15 -1.08 16 20 C 0.13 0.87 4.89 -4.05 -0.02 0.85 16 21 N -0.73 -5.72 5.73 -60.43 -0.35 -6.06 16 22 C 0.40 3.87 7.65 -155.02 -1.19 2.69 16 23 C -0.24 -2.00 9.33 -39.22 -0.37 -2.37 16 24 C -0.03 -0.24 10.17 -39.32 -0.40 -0.64 16 25 C -0.24 -1.67 10.10 -39.42 -0.40 -2.06 16 26 C 0.15 1.19 11.17 -17.57 -0.20 0.99 16 27 N -0.55 -5.65 10.39 -12.44 -0.13 -5.78 16 28 C -0.24 -6.12 8.62 -38.46 -0.33 -6.45 16 29 H 0.28 6.15 8.29 -40.82 -0.34 5.82 16 30 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 31 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 32 H 0.40 6.39 8.72 -40.82 -0.36 6.04 16 33 H 0.39 3.73 8.49 -40.82 -0.35 3.38 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.45 7.92 -51.93 -0.41 0.04 16 39 H 0.07 0.44 7.94 -51.93 -0.41 0.03 16 40 H 0.40 2.95 8.60 -40.82 -0.35 2.60 16 41 H 0.13 0.92 6.71 -52.49 -0.35 0.57 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.13 3.30 6.11 -52.49 -0.32 2.98 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -34.07 384.66 -12.05 -46.13 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -5.90 Total: 14.29 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -6.57 Total: 1.42 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -0.43 Total: -68.04 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.07 -12.05 -46.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673549576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.225 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds