Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48496 * 109.47286 * 270.00444 * 3 2 1 5 5 H 1.48507 * 109.47072 * 30.00764 * 3 2 1 6 6 H 1.48501 * 109.46957 * 150.00091 * 3 2 1 7 7 C 1.38803 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00398 * 359.97438 * 7 2 1 9 9 N 1.36947 * 120.00217 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00252 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47404 * 325.00807 * 10 9 7 12 12 C 1.53000 * 109.47120 * 205.00118 * 10 9 7 13 13 N 1.46491 * 109.46920 * 55.00468 * 12 10 9 14 14 C 1.34781 * 120.00082 * 180.02562 * 13 12 10 15 15 O 1.21515 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.48172 * 120.00511 * 179.97438 * 14 13 12 17 17 C 1.39128 * 119.69798 * 179.97438 * 16 14 13 18 18 C 1.39280 * 118.97672 * 179.97438 * 17 16 14 19 19 N 1.39941 * 120.82347 * 179.97438 * 18 17 16 20 20 C 1.35817 * 126.10354 * 179.71909 * 19 18 17 21 21 C 1.35295 * 107.61860 * 179.83987 * 20 19 18 22 22 C 1.39951 * 107.96533 * 0.41924 * 21 20 19 23 23 N 1.30825 * 108.36409 * 359.73957 * 22 21 20 24 24 C 1.39286 * 118.35879 * 0.02562 * 18 17 16 25 25 C 1.38348 * 119.27118 * 0.02562 * 24 18 17 26 26 N 1.31594 * 120.97758 * 359.97438 * 25 24 18 27 27 C 1.53002 * 109.47052 * 85.00063 * 10 9 7 28 28 C 1.53004 * 117.49843 * 8.74955 * 27 10 9 29 29 C 1.53005 * 117.49841 * 300.09140 * 27 10 9 30 30 H 0.96995 * 120.00225 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99763 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47279 * 294.99782 * 12 10 9 33 33 H 1.09002 * 109.46594 * 175.00340 * 12 10 9 34 34 H 0.97002 * 120.00490 * 359.97438 * 13 12 10 35 35 H 1.08006 * 120.50737 * 359.97438 * 17 16 14 36 36 H 1.08003 * 126.19621 * 0.02562 * 20 19 18 37 37 H 1.08002 * 126.01867 * 180.15642 * 21 20 19 38 38 H 1.08001 * 125.81822 * 179.71507 * 22 21 20 39 39 H 1.07993 * 120.36190 * 180.02562 * 24 18 17 40 40 H 1.08001 * 119.50709 * 180.26541 * 25 24 18 41 41 H 1.08998 * 115.55144 * 154.41582 * 27 10 9 42 42 H 1.09003 * 117.49805 * 359.97438 * 28 27 10 43 43 H 1.08997 * 117.50045 * 145.01971 * 28 27 10 44 44 H 1.09001 * 117.49095 * 214.97737 * 29 27 10 45 45 H 1.08990 * 117.49969 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3798 -1.2020 -0.0011 10 6 4.1123 -2.4707 -0.0011 11 1 3.5651 -3.2063 0.5887 12 6 5.4997 -2.2585 0.6080 13 7 5.3626 -1.6633 1.9395 14 6 6.4608 -1.3849 2.6696 15 8 7.5646 -1.6282 2.2235 16 6 6.3222 -0.7823 4.0161 17 6 7.4601 -0.4981 4.7645 18 6 7.3125 0.0687 6.0282 19 7 8.4305 0.3698 6.8141 20 6 8.4115 0.9261 8.0530 21 6 9.6939 1.0488 8.4665 22 6 10.5237 0.5631 7.4495 23 7 9.7694 0.1568 6.4609 24 6 6.0244 0.3275 6.4908 25 6 4.9419 0.0156 5.6878 26 7 5.1131 -0.5196 4.4978 27 6 4.2579 -2.9755 -1.4380 28 6 3.8369 -2.0302 -2.5650 29 6 2.9741 -3.2479 -2.2246 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3620 -0.0007 32 1 6.0786 -1.5913 -0.0305 33 1 6.0111 -3.2176 0.6896 34 1 4.4815 -1.4687 2.2955 35 1 8.4428 -0.7137 4.3716 36 1 7.5319 1.2152 8.6089 37 1 10.0200 1.4544 9.4128 38 1 11.6029 0.5297 7.4762 39 1 5.8725 0.7668 7.4656 40 1 3.9416 0.2186 6.0410 41 1 5.1095 -3.6304 -1.6223 42 1 3.4558 -1.0487 -2.2827 43 1 4.4113 -2.0634 -3.4908 44 1 2.9814 -4.0818 -2.9266 45 1 2.0259 -3.0679 -1.7183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690168592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 136.705083 kcal Electronic energy + Delta-G solvation = -28537.447720 eV Core-core repulsion = 24558.756103 eV Total energy + Delta-G solvation = -3978.691616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97886 -40.57466 -39.01572 -37.69266 -34.88526 -34.51052 -33.27079 -31.97894 -31.18257 -30.70547 -30.12923 -28.62504 -25.30694 -24.38039 -23.37543 -22.64743 -21.88627 -21.45859 -21.19273 -20.28758 -19.38964 -18.80241 -17.71986 -17.13146 -16.43938 -16.21123 -15.83930 -15.50281 -15.39306 -15.23303 -14.90111 -14.61103 -14.39914 -14.12030 -13.95930 -13.85423 -13.38819 -13.24365 -13.12386 -12.76873 -12.46568 -12.34906 -11.59072 -11.30464 -11.21954 -11.20581 -10.96103 -10.79794 -10.58135 -10.32260 -10.21710 -9.80220 -9.73382 -9.59318 -9.55565 -9.52229 -9.21306 -9.00494 -8.84754 -8.77704 -7.35861 -5.81643 -3.18310 0.18485 0.53538 1.71957 1.81664 2.33036 2.73098 3.17183 3.34809 3.39259 3.43715 3.68927 3.94332 4.06363 4.17395 4.44395 4.49670 4.53467 4.55392 4.69473 4.91352 5.04239 5.15610 5.21989 5.22180 5.31587 5.43284 5.46094 5.46367 5.61848 5.68549 5.76135 5.85204 5.95150 5.96269 6.08489 6.12969 6.28824 6.38351 6.55655 6.58791 6.62265 6.76221 7.01889 7.13164 7.14853 7.43086 7.82358 7.93912 8.33465 8.36711 9.14066 9.86516 10.05321 11.36063 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.002697 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.871642 B =10381.026202 C =11585.346766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.198 3.802 11 H 0.067 0.933 12 C 0.113 3.887 13 N -0.691 5.691 14 C 0.565 3.435 15 O -0.539 6.539 16 C 0.113 3.887 17 C -0.119 4.119 18 C 0.198 3.802 19 N -0.329 5.329 20 C 0.055 3.945 21 C -0.256 4.256 22 C 0.059 3.941 23 N -0.281 5.281 24 C -0.181 4.181 25 C 0.133 3.867 26 N -0.457 5.457 27 C -0.178 4.178 28 C -0.166 4.166 29 C -0.170 4.170 30 H 0.259 0.741 31 H 0.363 0.637 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.422 0.578 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.158 0.842 38 H 0.193 0.807 39 H 0.147 0.853 40 H 0.176 0.824 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.828 0.305 16.462 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.185 4.185 3 Si 0.707 3.293 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.111 0.889 9 N -0.386 5.386 10 C 0.088 3.912 11 H 0.085 0.915 12 C -0.011 4.011 13 N -0.342 5.342 14 C 0.348 3.652 15 O -0.417 6.417 16 C -0.026 4.026 17 C -0.142 4.142 18 C 0.097 3.903 19 N -0.106 5.106 20 C -0.086 4.086 21 C -0.284 4.284 22 C -0.129 4.129 23 N -0.098 5.098 24 C -0.205 4.205 25 C -0.027 4.027 26 N -0.169 5.169 27 C -0.200 4.200 28 C -0.203 4.203 29 C -0.207 4.207 30 H 0.069 0.931 31 H 0.196 0.804 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.260 0.740 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.175 0.825 38 H 0.210 0.790 39 H 0.164 0.836 40 H 0.193 0.807 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.533 -0.682 14.389 21.185 hybrid contribution 0.911 2.050 1.557 2.730 sum 16.445 1.368 15.946 22.947 Atomic orbital electron populations 1.69685 1.05060 1.25802 1.57187 1.24610 0.95084 0.96915 1.01874 0.86673 0.79353 0.85430 0.77795 1.21199 1.21887 1.20249 1.18994 0.80225 0.94573 1.43281 0.88885 1.42845 1.04185 1.01750 1.89774 1.19961 0.89499 0.89625 0.92151 0.91480 1.21750 0.98813 0.98255 0.82305 1.45887 1.09920 1.60903 1.17484 1.17731 0.84924 0.78958 0.83576 1.90781 1.25731 1.53954 1.71230 1.21188 0.88366 0.97520 0.95511 1.21803 1.01874 0.98344 0.92140 1.17637 0.84397 0.97258 0.90964 1.45961 1.04405 1.47421 1.12806 1.22840 1.00527 0.98620 0.86655 1.21679 0.91514 1.12203 1.02992 1.24201 1.00792 0.96824 0.91118 1.77577 0.85404 1.23335 1.23506 1.22044 0.90746 1.04655 1.03013 1.22771 0.99128 0.92486 0.88338 1.67697 1.24375 1.10738 1.14085 1.23000 0.98363 1.03645 0.94946 1.22850 1.03221 0.97200 0.96997 1.22903 0.96442 0.98648 1.02673 0.93055 0.80357 0.91349 0.91012 0.73973 0.82104 0.80150 0.82486 0.79029 0.83571 0.80685 0.89282 0.87203 0.91068 0.90849 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.97 55.49 0.78 -27.05 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 21.42 27.73 -169.99 -4.71 16.70 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.24 -6.15 8.64 -15.06 -0.13 -6.28 16 8 H 0.09 2.56 7.14 -52.48 -0.37 2.19 16 9 N -0.74 -15.85 2.88 -53.42 -0.15 -16.00 16 10 C 0.20 3.53 2.86 -67.93 -0.19 3.33 16 11 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 12 C 0.11 1.84 5.21 -4.05 -0.02 1.82 16 13 N -0.69 -11.67 5.38 -61.15 -0.33 -12.00 16 14 C 0.56 9.68 7.81 -12.18 -0.10 9.59 16 15 O -0.54 -10.32 16.32 5.35 0.09 -10.23 16 16 C 0.11 1.71 6.75 -83.05 -0.56 1.15 16 17 C -0.12 -1.66 9.26 -38.86 -0.36 -2.02 16 18 C 0.20 2.30 6.73 -83.38 -0.56 1.74 16 19 N -0.33 -3.61 3.81 -10.41 -0.04 -3.65 16 20 C 0.05 0.41 10.86 -16.84 -0.18 0.23 16 21 C -0.26 -1.75 10.80 -39.99 -0.43 -2.18 16 22 C 0.06 0.49 12.02 -17.34 -0.21 0.28 16 23 N -0.28 -3.35 11.97 30.64 0.37 -2.98 16 24 C -0.18 -1.62 9.54 -39.15 -0.37 -1.99 16 25 C 0.13 1.38 11.17 -17.61 -0.20 1.18 16 26 N -0.46 -6.48 9.54 -9.87 -0.09 -6.57 16 27 C -0.18 -2.99 5.71 -90.61 -0.52 -3.51 16 28 C -0.17 -2.99 9.74 -26.69 -0.26 -3.25 16 29 C -0.17 -3.03 9.87 -26.69 -0.26 -3.29 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.36 8.00 5.66 -40.82 -0.23 7.77 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.42 7.42 7.47 -40.82 -0.30 7.12 16 35 H 0.16 2.41 7.38 -52.48 -0.39 2.03 16 36 H 0.18 0.68 7.13 -52.48 -0.37 0.31 16 37 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.15 0.74 6.88 -52.49 -0.36 0.38 16 40 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 42 H 0.11 2.31 6.68 -51.93 -0.35 1.97 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.11 2.27 6.22 -51.93 -0.32 1.95 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -33.26 380.59 -8.49 -41.75 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -5.67 Total: 17.26 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -4.45 Total: -2.97 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: 0.53 Total: -68.25 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.26 -8.49 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690168592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.452 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds