Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48496 * 109.47286 * 270.00444 * 3 2 1 5 5 H 1.48507 * 109.47072 * 30.00764 * 3 2 1 6 6 H 1.48501 * 109.46957 * 150.00091 * 3 2 1 7 7 C 1.38803 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00398 * 359.97438 * 7 2 1 9 9 N 1.36947 * 120.00217 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00252 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47404 * 325.00807 * 10 9 7 12 12 C 1.53000 * 109.47120 * 205.00118 * 10 9 7 13 13 N 1.46491 * 109.46920 * 55.00468 * 12 10 9 14 14 C 1.34781 * 120.00082 * 180.02562 * 13 12 10 15 15 O 1.21515 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.48172 * 120.00511 * 179.97438 * 14 13 12 17 17 C 1.39128 * 119.69798 * 179.97438 * 16 14 13 18 18 C 1.39280 * 118.97672 * 179.97438 * 17 16 14 19 19 N 1.39941 * 120.82347 * 179.97438 * 18 17 16 20 20 C 1.35817 * 126.10354 * 179.71909 * 19 18 17 21 21 C 1.35295 * 107.61860 * 179.83987 * 20 19 18 22 22 C 1.39951 * 107.96533 * 0.41924 * 21 20 19 23 23 N 1.30825 * 108.36409 * 359.73957 * 22 21 20 24 24 C 1.39286 * 118.35879 * 0.02562 * 18 17 16 25 25 C 1.38348 * 119.27118 * 0.02562 * 24 18 17 26 26 N 1.31594 * 120.97758 * 359.97438 * 25 24 18 27 27 C 1.53002 * 109.47052 * 85.00063 * 10 9 7 28 28 C 1.53004 * 117.49843 * 8.74955 * 27 10 9 29 29 C 1.53005 * 117.49841 * 300.09140 * 27 10 9 30 30 H 0.96995 * 120.00225 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99763 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47279 * 294.99782 * 12 10 9 33 33 H 1.09002 * 109.46594 * 175.00340 * 12 10 9 34 34 H 0.97002 * 120.00490 * 359.97438 * 13 12 10 35 35 H 1.08006 * 120.50737 * 359.97438 * 17 16 14 36 36 H 1.08003 * 126.19621 * 0.02562 * 20 19 18 37 37 H 1.08002 * 126.01867 * 180.15642 * 21 20 19 38 38 H 1.08001 * 125.81822 * 179.71507 * 22 21 20 39 39 H 1.07993 * 120.36190 * 180.02562 * 24 18 17 40 40 H 1.08001 * 119.50709 * 180.26541 * 25 24 18 41 41 H 1.08998 * 115.55144 * 154.41582 * 27 10 9 42 42 H 1.09003 * 117.49805 * 359.97438 * 28 27 10 43 43 H 1.08997 * 117.50045 * 145.01971 * 28 27 10 44 44 H 1.09001 * 117.49095 * 214.97737 * 29 27 10 45 45 H 1.08990 * 117.49969 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3798 -1.2020 -0.0011 10 6 4.1123 -2.4707 -0.0011 11 1 3.5651 -3.2063 0.5887 12 6 5.4997 -2.2585 0.6080 13 7 5.3626 -1.6633 1.9395 14 6 6.4608 -1.3849 2.6696 15 8 7.5646 -1.6282 2.2235 16 6 6.3222 -0.7823 4.0161 17 6 7.4601 -0.4981 4.7645 18 6 7.3125 0.0687 6.0282 19 7 8.4305 0.3698 6.8141 20 6 8.4115 0.9261 8.0530 21 6 9.6939 1.0488 8.4665 22 6 10.5237 0.5631 7.4495 23 7 9.7694 0.1568 6.4609 24 6 6.0244 0.3275 6.4908 25 6 4.9419 0.0156 5.6878 26 7 5.1131 -0.5196 4.4978 27 6 4.2579 -2.9755 -1.4380 28 6 3.8369 -2.0302 -2.5650 29 6 2.9741 -3.2479 -2.2246 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3620 -0.0007 32 1 6.0786 -1.5913 -0.0305 33 1 6.0111 -3.2176 0.6896 34 1 4.4815 -1.4687 2.2955 35 1 8.4428 -0.7137 4.3716 36 1 7.5319 1.2152 8.6089 37 1 10.0200 1.4544 9.4128 38 1 11.6029 0.5297 7.4762 39 1 5.8725 0.7668 7.4656 40 1 3.9416 0.2186 6.0410 41 1 5.1095 -3.6304 -1.6223 42 1 3.4558 -1.0487 -2.2827 43 1 4.4113 -2.0634 -3.4908 44 1 2.9814 -4.0818 -2.9266 45 1 2.0259 -3.0679 -1.7183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690168592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 114.140572 kcal Electronic energy + Delta-G solvation = -28538.426190 eV Core-core repulsion = 24558.756103 eV Total energy + Delta-G solvation = -3979.670087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66464 -41.56704 -40.23233 -39.18625 -36.10323 -35.52815 -35.08324 -33.12543 -32.73533 -31.51129 -30.83987 -30.17437 -26.44060 -25.29104 -24.95084 -24.02937 -23.08756 -22.66335 -21.85110 -21.42969 -20.77925 -19.98705 -19.34234 -18.24192 -17.53270 -17.04126 -17.00861 -16.66759 -16.57703 -16.32203 -16.17610 -16.05528 -15.60982 -15.20622 -15.11031 -14.67724 -14.61691 -14.55163 -14.48617 -14.19567 -13.73156 -13.19770 -13.15708 -12.96752 -12.66702 -12.52237 -12.14146 -12.10725 -12.05271 -11.85854 -11.63104 -11.54121 -11.08025 -10.94292 -10.77923 -10.64512 -10.54500 -10.40357 -10.10978 -9.53445 -9.31430 -7.95741 -5.28047 -0.68033 -0.33692 1.00557 1.14596 1.38305 1.40180 1.45431 1.61637 1.79662 1.98106 2.50484 2.68218 3.01053 3.08432 3.23386 3.37901 3.49168 3.61234 3.72590 3.84902 3.85561 3.99718 4.04377 4.24128 4.30039 4.33724 4.44560 4.49574 4.52545 4.54927 4.62729 4.67421 4.81689 4.84837 4.97836 5.00333 5.13596 5.17920 5.25609 5.36786 5.51065 5.57567 5.62464 5.88294 5.96043 6.26803 6.32133 6.50918 6.66789 7.01592 7.12210 7.86313 8.04815 9.25541 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.002697 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.871642 B =10381.026202 C =11585.346766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.052 4.052 3 Si 0.937 3.063 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.261 1.261 7 C -0.202 4.202 8 H 0.067 0.933 9 N -0.741 5.741 10 C 0.197 3.803 11 H 0.063 0.937 12 C 0.121 3.879 13 N -0.693 5.693 14 C 0.563 3.437 15 O -0.568 6.568 16 C 0.090 3.910 17 C -0.133 4.133 18 C 0.194 3.806 19 N -0.347 5.347 20 C 0.052 3.948 21 C -0.254 4.254 22 C 0.059 3.941 23 N -0.341 5.341 24 C -0.154 4.154 25 C 0.130 3.870 26 N -0.485 5.485 27 C -0.164 4.164 28 C -0.172 4.172 29 C -0.174 4.174 30 H 0.254 0.746 31 H 0.363 0.637 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.418 0.582 35 H 0.138 0.862 36 H 0.222 0.778 37 H 0.190 0.810 38 H 0.219 0.781 39 H 0.196 0.804 40 H 0.210 0.790 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.497 0.943 18.887 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.243 4.243 3 Si 0.767 3.233 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.186 1.186 7 C -0.333 4.333 8 H 0.085 0.915 9 N -0.383 5.383 10 C 0.088 3.912 11 H 0.081 0.919 12 C -0.003 4.003 13 N -0.343 5.343 14 C 0.348 3.652 15 O -0.448 6.448 16 C -0.047 4.047 17 C -0.156 4.156 18 C 0.093 3.907 19 N -0.124 5.124 20 C -0.087 4.087 21 C -0.281 4.281 22 C -0.128 4.128 23 N -0.159 5.159 24 C -0.176 4.176 25 C -0.030 4.030 26 N -0.198 5.198 27 C -0.185 4.185 28 C -0.209 4.209 29 C -0.211 4.211 30 H 0.063 0.937 31 H 0.196 0.804 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.256 0.744 35 H 0.156 0.844 36 H 0.238 0.762 37 H 0.207 0.793 38 H 0.235 0.765 39 H 0.213 0.787 40 H 0.226 0.774 41 H 0.142 0.858 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.270 -0.070 16.824 24.110 hybrid contribution 0.480 1.790 0.952 2.084 sum 17.750 1.720 17.776 25.179 Atomic orbital electron populations 1.69836 1.06760 1.26101 1.60448 1.25186 0.95647 0.99978 1.03527 0.85681 0.78568 0.81615 0.77413 1.21546 1.22786 1.18643 1.18881 0.81829 0.93165 1.39456 0.91492 1.42790 1.02735 1.03214 1.89603 1.20104 0.89963 0.87843 0.93255 0.91919 1.21689 0.97453 0.99131 0.82056 1.45894 1.09737 1.61040 1.17621 1.18089 0.84347 0.78366 0.84407 1.90745 1.26571 1.55266 1.72195 1.20796 0.89307 0.99626 0.94957 1.21621 1.00461 0.99853 0.93691 1.17824 0.85961 0.96691 0.90274 1.46057 1.03854 1.48649 1.13889 1.23649 1.02442 0.97252 0.85375 1.22148 0.91022 1.11317 1.03646 1.24846 1.02136 0.95140 0.90717 1.77558 0.86546 1.25969 1.25852 1.22491 0.88740 1.02150 1.04248 1.23435 1.01159 0.91176 0.87199 1.67646 1.23833 1.12151 1.16173 1.22986 0.98848 1.03282 0.93350 1.22807 1.03823 0.95593 0.98672 1.22830 0.95159 0.99676 1.03470 0.93660 0.80430 0.91603 0.89162 0.74398 0.84417 0.76170 0.79295 0.76497 0.78718 0.77353 0.85827 0.90529 0.88375 0.88008 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.63 13.97 21.65 0.30 -60.33 16 2 C -0.05 -2.91 5.50 84.86 0.47 -2.45 16 3 Si 0.94 45.19 27.73 68.60 1.90 47.09 16 4 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 5 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 6 H -0.26 -11.76 6.52 99.48 0.65 -11.11 16 7 C -0.20 -10.55 8.64 84.03 0.73 -9.83 16 8 H 0.07 3.84 7.14 -2.91 -0.02 3.82 16 9 N -0.74 -31.68 2.88 -322.94 -0.93 -32.61 16 10 C 0.20 6.90 2.86 44.99 0.13 7.02 16 11 H 0.06 2.29 8.08 -2.38 -0.02 2.27 16 12 C 0.12 3.83 5.21 86.38 0.45 4.28 16 13 N -0.69 -23.49 5.38 -465.67 -2.50 -26.00 16 14 C 0.56 19.79 7.81 86.88 0.68 20.47 16 15 O -0.57 -22.43 16.32 -3.76 -0.06 -22.49 16 16 C 0.09 2.79 6.75 41.86 0.28 3.07 16 17 C -0.13 -3.82 9.26 22.73 0.21 -3.61 16 18 C 0.19 4.26 6.73 38.35 0.26 4.52 16 19 N -0.35 -7.05 3.81 -186.86 -0.71 -7.76 16 20 C 0.05 0.60 10.86 83.40 0.91 1.50 16 21 C -0.25 -2.62 10.80 22.01 0.24 -2.38 16 22 C 0.06 0.89 12.02 85.26 1.02 1.92 16 23 N -0.34 -8.05 11.97 -56.98 -0.68 -8.73 16 24 C -0.15 -2.22 9.54 22.55 0.22 -2.01 16 25 C 0.13 2.37 11.17 84.75 0.95 3.32 16 26 N -0.49 -13.45 9.54 -185.13 -1.77 -15.21 16 27 C -0.16 -5.20 5.71 -10.79 -0.06 -5.26 16 28 C -0.17 -5.99 9.74 30.62 0.30 -5.69 16 29 C -0.17 -6.06 9.87 30.62 0.30 -5.76 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.36 15.83 5.66 -92.71 -0.52 15.30 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.42 14.82 7.47 -92.71 -0.69 14.13 16 35 H 0.14 4.50 7.38 -2.91 -0.02 4.48 16 36 H 0.22 0.42 7.13 -2.91 -0.02 0.40 16 37 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 38 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.20 0.80 6.88 -2.91 -0.02 0.78 16 40 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.12 3.18 8.11 -2.39 -0.02 3.16 16 42 H 0.08 3.22 6.68 -2.39 -0.02 3.21 16 43 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.07 3.08 6.22 -2.39 -0.01 3.07 16 Total: -1.00 -77.74 380.59 2.39 -75.35 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -0.23 Total: 41.58 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 7.07 Total: 9.12 kcal Atomic # 7 Polarization: -144.36 SS G_CDS: -6.29 Total: -150.65 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -77.74 2.39 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690168592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.489 kcal (2) G-P(sol) polarization free energy of solvation -77.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds