Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99833 * 2 1 4 4 H 1.48497 * 109.47479 * 270.00103 * 3 2 1 5 5 H 1.48504 * 109.47174 * 30.00705 * 3 2 1 6 6 H 1.48503 * 109.47110 * 150.00396 * 3 2 1 7 7 C 1.38796 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00546 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00012 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00048 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99543 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46951 * 205.00226 * 14 13 11 16 16 C 1.52997 * 109.47435 * 300.00387 * 15 14 13 17 17 C 1.52997 * 109.47129 * 299.99883 * 16 15 14 18 18 N 1.46897 * 109.47276 * 179.97438 * 17 16 15 19 19 C 1.46903 * 111.00190 * 153.36629 * 18 17 16 20 20 H 1.09000 * 110.53725 * 38.09008 * 19 18 17 21 21 C 1.54624 * 110.48653 * 275.47800 * 19 18 17 22 22 C 1.54478 * 101.76552 * 216.52133 * 21 19 18 23 23 N 1.46765 * 105.47258 * 25.42071 * 22 21 19 24 24 C 1.34418 * 111.29893 * 342.98160 * 23 22 21 25 25 O 1.21280 * 124.94174 * 180.46347 * 24 23 22 26 26 C 1.53004 * 109.47210 * 60.00192 * 17 16 15 27 27 C 1.52997 * 109.46918 * 299.99937 * 26 17 16 28 28 H 0.96998 * 120.00272 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46964 * 59.99789 * 10 9 7 30 30 H 1.08999 * 109.46940 * 300.00302 * 10 9 7 31 31 H 0.96996 * 120.00368 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47513 * 325.00767 * 14 13 11 33 33 H 1.08997 * 109.47131 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.46746 * 60.00439 * 15 14 13 35 35 H 1.09004 * 109.47156 * 179.97438 * 16 15 14 36 36 H 1.09006 * 109.47024 * 59.99983 * 16 15 14 37 37 H 1.08993 * 109.47505 * 300.00121 * 17 16 15 38 38 H 1.00904 * 111.00621 * 277.32499 * 18 17 16 39 39 H 1.08999 * 110.97206 * 334.63907 * 21 19 18 40 40 H 1.08998 * 110.96982 * 98.36849 * 21 19 18 41 41 H 1.09006 * 110.24447 * 144.41340 * 22 21 19 42 42 H 1.09001 * 110.24916 * 266.41510 * 22 21 19 43 43 H 0.96995 * 124.34949 * 162.98934 * 23 22 21 44 44 H 1.09006 * 109.47203 * 59.99741 * 26 17 16 45 45 H 1.09002 * 109.47089 * 179.97438 * 26 17 16 46 46 H 1.08997 * 109.47128 * 300.00103 * 27 26 17 47 47 H 1.08997 * 109.47472 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3026 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 -0.0003 14 6 2.3305 -7.7150 -0.0003 15 6 3.3762 -8.6511 0.6090 16 6 4.6614 -8.5878 -0.2187 17 6 4.3645 -9.0212 -1.6557 18 7 5.5983 -8.9598 -2.4505 19 6 5.5497 -9.9072 -3.5722 20 1 4.5471 -9.9439 -3.9985 21 6 5.9938 -11.3147 -3.1114 22 6 6.7633 -11.8236 -4.3505 23 7 7.2299 -10.6173 -5.0442 24 6 6.5615 -9.5269 -4.6306 25 8 6.7425 -8.4020 -5.0463 26 6 3.3189 -8.0851 -2.2650 27 6 2.0337 -8.1484 -1.4373 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7312 0.8895 30 1 3.1245 -3.7312 -0.8905 31 1 3.8010 -6.1834 -0.0006 32 1 1.4149 -7.7602 0.5894 33 1 2.9942 -9.6720 0.6086 34 1 3.5877 -8.3423 1.6327 35 1 5.4065 -9.2544 0.2156 36 1 5.0437 -7.5670 -0.2187 37 1 3.9823 -10.0419 -1.6557 38 1 5.7717 -8.0210 -2.7773 39 1 6.6499 -11.2521 -2.2434 40 1 5.1309 -11.9466 -2.9009 41 1 7.6125 -12.4338 -4.0427 42 1 6.0998 -12.3978 -4.9971 43 1 7.9304 -10.6082 -5.7151 44 1 3.7011 -7.0642 -2.2650 45 1 3.1077 -8.3936 -3.2889 46 1 1.6515 -9.1692 -1.4373 47 1 1.2889 -7.4812 -1.8711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690528040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = -83.293153 kcal Electronic energy + Delta-G solvation = -27366.163137 eV Core-core repulsion = 23481.082882 eV Total energy + Delta-G solvation = -3885.080255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93052 -39.99117 -38.14428 -36.80225 -35.36159 -32.76493 -32.39915 -31.02622 -30.73832 -29.35029 -28.06742 -26.19224 -25.43571 -23.00673 -22.66105 -21.67601 -21.00147 -20.57179 -19.15316 -17.87525 -17.80198 -17.13376 -16.60980 -16.33838 -15.58884 -15.51125 -15.12197 -14.77773 -14.68387 -14.30957 -14.29244 -14.17096 -13.98042 -13.81404 -13.29827 -13.11701 -12.91791 -12.85618 -12.63235 -12.42051 -12.33180 -12.07215 -11.84290 -11.77365 -11.35079 -11.03971 -10.99655 -10.93417 -10.74315 -10.61814 -10.56990 -10.18917 -9.78164 -9.61781 -9.33213 -9.04225 -8.89431 -8.77558 -8.20406 -6.46702 -6.18984 -3.89121 2.11641 2.83642 3.08807 3.15161 3.24800 3.30497 3.35519 3.67594 3.79315 3.80453 4.05244 4.23372 4.43583 4.50201 4.52415 4.58882 4.76439 4.83515 4.92577 4.97243 5.05424 5.16072 5.16984 5.20225 5.24028 5.29124 5.35291 5.43590 5.52892 5.58264 5.67746 5.83324 5.90684 5.92458 5.95493 5.96371 6.11434 6.18284 6.20925 6.26927 6.50110 6.58942 6.75320 6.92907 7.62525 7.78037 7.78348 8.38162 8.68119 9.26471 10.88424 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.002184 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.349660 B =12817.007753 C =14019.620291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.731 5.731 14 C 0.146 3.854 15 C -0.125 4.125 16 C -0.106 4.106 17 C 0.089 3.911 18 N -0.667 5.667 19 C 0.051 3.949 20 H 0.084 0.916 21 C -0.124 4.124 22 C 0.100 3.900 23 N -0.731 5.731 24 C 0.521 3.479 25 O -0.525 6.525 26 C -0.148 4.148 27 C -0.126 4.126 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.396 0.604 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.355 0.645 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.411 0.589 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.291 -29.233 -5.063 32.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.386 5.386 14 C 0.041 3.959 15 C -0.164 4.164 16 C -0.144 4.144 17 C -0.021 4.021 18 N -0.300 5.300 19 C -0.062 4.062 20 H 0.102 0.898 21 C -0.163 4.163 22 C -0.024 4.024 23 N -0.387 5.387 24 C 0.306 3.694 25 O -0.400 6.400 26 C -0.187 4.187 27 C -0.165 4.165 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.231 0.769 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.176 0.824 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.250 0.750 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.483 -29.283 -4.787 32.190 hybrid contribution 2.100 1.735 -1.028 2.912 sum 14.583 -27.548 -5.814 31.708 Atomic orbital electron populations 1.70017 1.05937 1.27408 1.46973 1.24990 0.95030 0.99022 0.94577 0.86173 0.79418 0.81587 0.78352 1.20278 1.20769 1.19693 1.22872 0.94913 0.91690 1.58807 0.90953 1.85367 1.05010 0.96311 1.96705 1.23537 1.06506 0.95608 1.04829 1.20292 0.86585 0.86310 0.74953 1.90691 1.15377 1.85605 1.47668 1.46133 1.09788 1.05248 1.77482 1.20856 0.97624 0.81313 0.96111 1.21822 0.95180 0.99807 0.99546 1.21474 0.97264 1.02076 0.93609 1.21693 0.87605 0.99374 0.93410 1.60708 1.36210 1.11632 1.21443 1.22195 0.98103 0.94697 0.91223 0.89846 1.22745 1.01143 0.94324 0.98048 1.22104 0.99312 0.87310 0.93717 1.46121 1.40211 1.08722 1.43653 1.20808 0.81815 0.84327 0.82453 1.90796 1.67927 1.21328 1.59984 1.22231 0.96581 1.00815 0.99042 1.21857 0.97398 1.01655 0.95626 0.92221 0.89326 0.89354 0.76893 0.89389 0.90534 0.90859 0.90901 0.91782 0.90231 0.82448 0.88608 0.89385 0.89987 0.90978 0.75003 0.91152 0.92351 0.91348 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.16 6.16 36.00 0.22 -2.93 16 11 C 0.53 9.88 7.81 -10.99 -0.09 9.80 16 12 O -0.52 -11.68 15.53 5.55 0.09 -11.59 16 13 N -0.73 -9.55 4.23 -53.80 -0.23 -9.78 16 14 C 0.15 1.61 2.78 -67.92 -0.19 1.42 16 15 C -0.13 -0.95 5.61 -26.73 -0.15 -1.10 16 16 C -0.11 -0.75 5.36 -26.73 -0.14 -0.90 16 17 C 0.09 0.64 2.33 -67.71 -0.16 0.48 16 18 N -0.67 -5.24 6.06 -99.75 -0.60 -5.85 16 19 C 0.05 0.36 3.03 -67.72 -0.21 0.15 16 20 H 0.08 0.57 7.34 -51.93 -0.38 0.19 16 21 C -0.12 -0.48 6.61 -25.10 -0.17 -0.65 16 22 C 0.10 0.30 7.78 -3.12 -0.02 0.27 16 23 N -0.73 -4.27 6.24 -59.20 -0.37 -4.64 16 24 C 0.52 4.88 8.02 -10.86 -0.09 4.79 16 25 O -0.53 -7.31 17.53 5.56 0.10 -7.21 16 26 C -0.15 -1.37 5.00 -26.73 -0.13 -1.50 16 27 C -0.13 -1.32 5.60 -26.73 -0.15 -1.47 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 31 H 0.40 4.29 6.87 -40.82 -0.28 4.01 16 32 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 37 H 0.08 0.50 7.65 -51.93 -0.40 0.10 16 38 H 0.35 3.47 7.83 -39.29 -0.31 3.16 16 39 H 0.10 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.41 1.91 8.96 -40.82 -0.37 1.54 16 44 H 0.07 0.77 7.59 -51.93 -0.39 0.38 16 45 H 0.06 0.55 7.56 -51.93 -0.39 0.15 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -36.79 388.84 -10.17 -46.96 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.44 Total: 3.92 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.07 Total: -4.79 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.47 Total: -46.01 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.79 -10.17 -46.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690528040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.332 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds