Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99833 * 2 1 4 4 H 1.48497 * 109.47479 * 270.00103 * 3 2 1 5 5 H 1.48504 * 109.47174 * 30.00705 * 3 2 1 6 6 H 1.48503 * 109.47110 * 150.00396 * 3 2 1 7 7 C 1.38796 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00546 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00012 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00048 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99543 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46951 * 205.00226 * 14 13 11 16 16 C 1.52997 * 109.47435 * 300.00387 * 15 14 13 17 17 C 1.52997 * 109.47129 * 299.99883 * 16 15 14 18 18 N 1.46897 * 109.47276 * 179.97438 * 17 16 15 19 19 C 1.46903 * 111.00190 * 153.36629 * 18 17 16 20 20 H 1.09000 * 110.53725 * 38.09008 * 19 18 17 21 21 C 1.54624 * 110.48653 * 275.47800 * 19 18 17 22 22 C 1.54478 * 101.76552 * 216.52133 * 21 19 18 23 23 N 1.46765 * 105.47258 * 25.42071 * 22 21 19 24 24 C 1.34418 * 111.29893 * 342.98160 * 23 22 21 25 25 O 1.21280 * 124.94174 * 180.46347 * 24 23 22 26 26 C 1.53004 * 109.47210 * 60.00192 * 17 16 15 27 27 C 1.52997 * 109.46918 * 299.99937 * 26 17 16 28 28 H 0.96998 * 120.00272 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46964 * 59.99789 * 10 9 7 30 30 H 1.08999 * 109.46940 * 300.00302 * 10 9 7 31 31 H 0.96996 * 120.00368 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47513 * 325.00767 * 14 13 11 33 33 H 1.08997 * 109.47131 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.46746 * 60.00439 * 15 14 13 35 35 H 1.09004 * 109.47156 * 179.97438 * 16 15 14 36 36 H 1.09006 * 109.47024 * 59.99983 * 16 15 14 37 37 H 1.08993 * 109.47505 * 300.00121 * 17 16 15 38 38 H 1.00904 * 111.00621 * 277.32499 * 18 17 16 39 39 H 1.08999 * 110.97206 * 334.63907 * 21 19 18 40 40 H 1.08998 * 110.96982 * 98.36849 * 21 19 18 41 41 H 1.09006 * 110.24447 * 144.41340 * 22 21 19 42 42 H 1.09001 * 110.24916 * 266.41510 * 22 21 19 43 43 H 0.96995 * 124.34949 * 162.98934 * 23 22 21 44 44 H 1.09006 * 109.47203 * 59.99741 * 26 17 16 45 45 H 1.09002 * 109.47089 * 179.97438 * 26 17 16 46 46 H 1.08997 * 109.47128 * 300.00103 * 27 26 17 47 47 H 1.08997 * 109.47472 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3026 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 -0.0003 14 6 2.3305 -7.7150 -0.0003 15 6 3.3762 -8.6511 0.6090 16 6 4.6614 -8.5878 -0.2187 17 6 4.3645 -9.0212 -1.6557 18 7 5.5983 -8.9598 -2.4505 19 6 5.5497 -9.9072 -3.5722 20 1 4.5471 -9.9439 -3.9985 21 6 5.9938 -11.3147 -3.1114 22 6 6.7633 -11.8236 -4.3505 23 7 7.2299 -10.6173 -5.0442 24 6 6.5615 -9.5269 -4.6306 25 8 6.7425 -8.4020 -5.0463 26 6 3.3189 -8.0851 -2.2650 27 6 2.0337 -8.1484 -1.4373 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7312 0.8895 30 1 3.1245 -3.7312 -0.8905 31 1 3.8010 -6.1834 -0.0006 32 1 1.4149 -7.7602 0.5894 33 1 2.9942 -9.6720 0.6086 34 1 3.5877 -8.3423 1.6327 35 1 5.4065 -9.2544 0.2156 36 1 5.0437 -7.5670 -0.2187 37 1 3.9823 -10.0419 -1.6557 38 1 5.7717 -8.0210 -2.7773 39 1 6.6499 -11.2521 -2.2434 40 1 5.1309 -11.9466 -2.9009 41 1 7.6125 -12.4338 -4.0427 42 1 6.0998 -12.3978 -4.9971 43 1 7.9304 -10.6082 -5.7151 44 1 3.7011 -7.0642 -2.2650 45 1 3.1077 -8.3936 -3.2889 46 1 1.6515 -9.1692 -1.4373 47 1 1.2889 -7.4812 -1.8711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690528040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = -112.947221 kcal Electronic energy + Delta-G solvation = -27367.449034 eV Core-core repulsion = 23481.082882 eV Total energy + Delta-G solvation = -3886.366152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56689 -41.04816 -39.26211 -37.48484 -36.18016 -34.60240 -33.84350 -31.76023 -31.56193 -30.39133 -28.96587 -27.67306 -26.78130 -23.67622 -23.24568 -22.48280 -21.99841 -21.21195 -20.09752 -19.87753 -18.38149 -17.96256 -17.63167 -17.34103 -16.89629 -16.67067 -16.48824 -16.11592 -15.78925 -15.36622 -15.16530 -15.06257 -14.73476 -14.60650 -14.51710 -14.38260 -13.96932 -13.67836 -13.53109 -13.35981 -13.18330 -13.10982 -13.00269 -12.90832 -12.62977 -12.50853 -12.18235 -12.06145 -11.74265 -11.71467 -11.35635 -11.27791 -11.15903 -10.90156 -10.89302 -10.29660 -10.10050 -10.03019 -9.46796 -8.67896 -8.36170 -6.14114 1.26185 1.40868 1.44853 1.45849 1.56813 1.64079 2.25414 2.34244 2.37805 2.97678 3.13397 3.31251 3.31901 3.68878 3.75066 3.82101 3.93289 4.05344 4.14482 4.15681 4.22231 4.27591 4.34312 4.45916 4.48508 4.54288 4.57784 4.62981 4.68463 4.81040 4.91309 5.02509 5.09211 5.11812 5.17955 5.23293 5.30229 5.38568 5.40169 5.45098 5.62172 5.81206 5.96820 6.03941 6.18286 6.21282 6.53850 7.04988 7.18611 7.28325 8.73054 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.002184 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.349660 B =12817.007753 C =14019.620291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.081 0.919 9 S -0.148 6.148 10 C -0.132 4.132 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.706 5.706 14 C 0.141 3.859 15 C -0.112 4.112 16 C -0.102 4.102 17 C 0.098 3.902 18 N -0.667 5.667 19 C 0.049 3.951 20 H 0.086 0.914 21 C -0.115 4.115 22 C 0.097 3.903 23 N -0.722 5.722 24 C 0.507 3.493 25 O -0.585 6.585 26 C -0.142 4.142 27 C -0.121 4.121 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.410 0.590 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.341 0.659 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.416 0.584 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.095 0.905 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.791 -31.845 -4.510 36.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.099 0.901 9 S 0.079 5.921 10 C -0.283 4.283 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.360 5.360 14 C 0.037 3.963 15 C -0.151 4.151 16 C -0.141 4.141 17 C -0.011 4.011 18 N -0.298 5.298 19 C -0.064 4.064 20 H 0.103 0.897 21 C -0.153 4.153 22 C -0.026 4.026 23 N -0.376 5.376 24 C 0.293 3.707 25 O -0.465 6.465 26 C -0.181 4.181 27 C -0.160 4.160 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.248 0.752 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.160 0.840 39 H 0.113 0.887 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.255 0.745 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 15.042 -32.001 -4.228 35.612 hybrid contribution 1.369 2.367 -1.248 3.006 sum 16.411 -29.634 -5.476 34.314 Atomic orbital electron populations 1.70178 1.07921 1.28615 1.47970 1.26132 0.96005 1.03314 0.93740 0.84955 0.78220 0.76035 0.78775 1.19403 1.20078 1.18234 1.23200 0.95288 0.92117 1.58905 0.90120 1.85516 1.10483 0.99111 1.97025 1.23388 1.03543 0.94978 1.06372 1.19995 0.86349 0.86619 0.75061 1.90677 1.17304 1.86054 1.50311 1.45942 1.09882 1.05193 1.74987 1.21105 0.98247 0.80409 0.96583 1.21777 0.94026 0.99942 0.99316 1.21463 0.97234 1.01993 0.93364 1.21672 0.86588 0.99763 0.93110 1.60810 1.36182 1.10984 1.21828 1.22329 0.97501 0.96101 0.90475 0.89685 1.22784 1.02073 0.92275 0.98173 1.22392 1.00515 0.86217 0.93472 1.46244 1.39304 1.08964 1.43106 1.21344 0.82406 0.84108 0.82807 1.90755 1.69921 1.23746 1.62107 1.22189 0.96597 1.00345 0.99013 1.21797 0.97041 1.02179 0.94988 0.91964 0.87418 0.87920 0.75210 0.91447 0.87898 0.90417 0.89216 0.92745 0.87951 0.84042 0.88726 0.86918 0.87721 0.89077 0.74521 0.93346 0.92598 0.88616 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.93 13.22 21.65 0.29 -56.64 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 44.70 29.55 68.60 2.03 46.73 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.55 -32.11 9.50 67.95 0.65 -31.47 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 10 C -0.13 -5.45 6.16 71.23 0.44 -5.01 16 11 C 0.53 20.23 7.81 87.66 0.68 20.91 16 12 O -0.57 -26.57 15.53 -3.04 -0.05 -26.61 16 13 N -0.71 -18.10 4.23 -442.51 -1.87 -19.97 16 14 C 0.14 2.95 2.78 44.99 0.13 3.07 16 15 C -0.11 -1.34 5.61 30.59 0.17 -1.17 16 16 C -0.10 -1.13 5.36 30.59 0.16 -0.97 16 17 C 0.10 1.15 2.33 44.92 0.10 1.25 16 18 N -0.67 -9.36 6.06 -469.52 -2.84 -12.20 16 19 C 0.05 0.59 3.03 44.91 0.14 0.72 16 20 H 0.09 0.99 7.34 -2.39 -0.02 0.97 16 21 C -0.11 -0.46 6.61 31.65 0.21 -0.25 16 22 C 0.10 0.24 7.78 86.83 0.68 0.91 16 23 N -0.72 -7.26 6.24 -459.80 -2.87 -10.13 16 24 C 0.51 9.24 8.02 87.90 0.71 9.95 16 25 O -0.59 -16.96 17.53 -3.03 -0.05 -17.01 16 26 C -0.14 -2.52 5.00 30.59 0.15 -2.37 16 27 C -0.12 -2.45 5.60 30.60 0.17 -2.28 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 31 H 0.41 8.36 6.87 -92.71 -0.64 7.72 16 32 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.05 0.72 6.51 -2.38 -0.02 0.71 16 37 H 0.10 0.81 7.65 -2.39 -0.02 0.79 16 38 H 0.34 6.60 7.83 -89.69 -0.70 5.90 16 39 H 0.09 0.47 8.09 -2.39 -0.02 0.45 16 40 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.10 -0.14 8.14 -2.38 -0.02 -0.16 16 42 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.42 3.36 8.96 -92.71 -0.83 2.53 16 44 H 0.05 1.07 7.59 -2.38 -0.02 1.05 16 45 H 0.06 1.02 7.56 -2.39 -0.02 1.00 16 46 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -85.79 388.84 -2.85 -88.63 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -1.16 Total: 22.32 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 4.85 Total: -5.47 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -7.30 Total: -98.95 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.10 Total: -43.63 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -85.79 -2.85 -88.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690528040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.313 kcal (2) G-P(sol) polarization free energy of solvation -85.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds