Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09008 * 112.84472 * 45.33323 * 15 14 13 17 17 C 1.53773 * 113.61734 * 176.52573 * 15 14 13 18 18 C 1.53781 * 87.08132 * 139.98496 * 17 15 14 19 19 H 1.08999 * 113.61644 * 89.11551 * 18 17 15 20 20 N 1.46903 * 113.61617 * 219.93783 * 18 17 15 21 21 C 1.46894 * 110.99966 * 205.00000 * 20 18 17 22 22 H 1.09003 * 109.40481 * 34.99764 * 21 20 18 23 23 C 1.53072 * 109.40104 * 154.82698 * 21 20 18 24 24 C 1.53299 * 108.44507 * 169.11072 * 23 21 20 25 25 C 1.52925 * 108.61196 * 292.36295 * 24 23 21 26 26 N 1.45754 * 110.48644 * 50.76947 * 25 24 23 27 27 C 1.33348 * 124.10559 * 340.92120 * 26 25 24 28 28 O 1.21285 * 118.24653 * 182.22676 * 27 26 25 29 29 C 1.53782 * 113.61593 * 274.14013 * 15 14 13 30 30 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 32 32 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 33 33 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 34 34 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 35 35 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 36 36 H 1.09003 * 113.61576 * 254.53345 * 17 15 14 37 37 H 1.08994 * 113.61451 * 25.43563 * 17 15 14 38 38 H 1.00895 * 110.99709 * 328.95178 * 20 18 17 39 39 H 1.08992 * 109.67435 * 288.76174 * 23 21 20 40 40 H 1.09003 * 109.67494 * 49.29606 * 23 21 20 41 41 H 1.08997 * 109.62093 * 172.63576 * 24 23 21 42 42 H 1.09001 * 109.78333 * 52.18872 * 24 23 21 43 43 H 1.09000 * 109.30055 * 290.45509 * 25 24 23 44 44 H 1.08998 * 109.29634 * 171.08100 * 25 24 23 45 45 H 0.96992 * 117.94334 * 160.94969 * 26 25 24 46 46 H 1.08997 * 113.61002 * 334.56287 * 29 15 14 47 47 H 1.08999 * 113.61534 * 105.46738 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 4.2803 -8.4334 0.6771 17 6 3.0699 -10.1723 0.0389 18 6 4.1814 -10.4703 -0.9812 19 1 5.1463 -10.6899 -0.5241 20 7 3.7959 -11.4551 -2.0008 21 6 4.9770 -12.1340 -2.5501 22 1 5.7207 -12.2605 -1.7633 23 6 4.5692 -13.5072 -3.0897 24 6 5.7411 -14.0793 -3.8956 25 6 5.9292 -13.2300 -5.1533 26 7 5.9996 -11.8157 -4.8081 27 6 5.5592 -11.3040 -3.6581 28 8 5.6333 -10.1040 -3.4981 29 6 4.0395 -9.0093 -1.4457 30 1 -0.4849 0.8401 0.0004 31 1 3.1244 -3.7267 -0.9039 32 1 3.1244 -3.7361 0.8761 33 1 3.8007 -6.1835 -0.0260 34 1 1.7212 -7.8796 0.8553 35 1 1.7219 -7.8705 -0.9248 36 1 3.2401 -10.6264 1.0151 37 1 2.0657 -10.3535 -0.3441 38 1 3.1363 -12.1217 -1.6284 39 1 4.3368 -14.1736 -2.2591 40 1 3.6956 -13.4039 -3.7334 41 1 5.5224 -15.1089 -4.1789 42 1 6.6505 -14.0504 -3.2954 43 1 5.0893 -13.3948 -5.8283 44 1 6.8520 -13.5254 -5.6526 45 1 6.3908 -11.2087 -5.4555 46 1 3.3008 -8.8720 -2.2353 47 1 4.9912 -8.5259 -1.6663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691691308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = -56.521762 kcal Electronic energy + Delta-G solvation = -26478.373886 eV Core-core repulsion = 22594.454525 eV Total energy + Delta-G solvation = -3883.919361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85057 -39.58615 -38.55897 -36.87091 -35.40679 -33.84328 -32.36896 -31.87775 -29.85128 -28.70467 -26.54474 -25.82521 -25.38272 -24.40409 -23.21194 -21.65317 -20.38848 -19.85626 -19.22768 -17.77529 -17.68717 -16.87320 -16.52279 -16.12580 -15.99694 -15.50075 -15.13287 -15.03755 -14.80728 -14.74776 -14.53089 -14.27771 -13.95128 -13.81266 -13.56385 -13.04891 -12.85764 -12.53019 -12.51539 -12.28446 -12.06749 -11.93785 -11.80755 -11.66957 -11.44927 -11.02427 -10.95638 -10.89292 -10.79179 -10.65217 -10.30542 -10.07859 -9.73748 -9.44988 -9.25667 -9.01928 -8.85028 -8.69466 -8.15305 -6.42632 -6.15984 -3.85595 2.33929 2.85612 3.14102 3.23779 3.26053 3.32960 3.39211 3.66342 3.83975 3.97529 4.06724 4.25554 4.26259 4.33621 4.35887 4.55370 4.65506 4.72427 4.73874 4.83509 4.95428 5.05617 5.12548 5.17548 5.19100 5.24194 5.26330 5.33597 5.49681 5.51320 5.64733 5.69862 5.81061 5.96734 5.99450 6.10382 6.20703 6.23689 6.24390 6.39693 6.68514 6.80543 6.88322 7.00646 7.65900 7.87373 7.95668 8.41562 8.75919 9.29449 10.91558 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.001669 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.355709 B =16774.185550 C =17546.405528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.521 6.521 13 N -0.736 5.736 14 C 0.135 3.865 15 C -0.129 4.129 16 H 0.093 0.907 17 C -0.133 4.133 18 C 0.066 3.934 19 H 0.071 0.929 20 N -0.660 5.660 21 C 0.076 3.924 22 H 0.075 0.925 23 C -0.128 4.128 24 C -0.134 4.134 25 C 0.110 3.890 26 N -0.725 5.725 27 C 0.524 3.476 28 O -0.529 6.529 29 C -0.098 4.098 30 H 0.267 0.733 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.349 0.651 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.399 0.601 46 H 0.087 0.913 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.036 -34.713 -6.410 38.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.396 6.396 13 N -0.390 5.390 14 C 0.011 3.989 15 C -0.148 4.148 16 H 0.111 0.889 17 C -0.171 4.171 18 C -0.043 4.043 19 H 0.089 0.911 20 N -0.293 5.293 21 C -0.037 4.037 22 H 0.093 0.907 23 C -0.166 4.166 24 C -0.173 4.173 25 C -0.015 4.015 26 N -0.380 5.380 27 C 0.309 3.691 28 O -0.404 6.404 29 C -0.136 4.136 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.231 0.769 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.170 0.830 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.235 0.765 46 H 0.106 0.894 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.754 -34.012 -6.646 36.927 hybrid contribution 2.899 0.827 0.373 3.038 sum 15.653 -33.185 -6.273 37.224 Atomic orbital electron populations 1.70039 1.05938 1.27251 1.47116 1.24996 0.95025 0.99007 0.94620 0.86116 0.79603 0.81924 0.77848 1.19631 1.20591 1.20605 1.22928 0.94971 0.91711 1.58604 0.90889 1.85378 1.05130 0.96302 1.96689 1.23530 1.06432 0.95542 1.04881 1.20282 0.86541 0.86308 0.75212 1.90690 1.15414 1.85671 1.47788 1.45980 1.09880 1.05574 1.77608 1.21224 0.95260 0.80335 1.02045 1.22704 0.98212 0.94288 0.99606 0.88881 1.23217 0.99461 0.95702 0.98747 1.23093 0.96954 0.93419 0.90823 0.91145 1.60252 1.12567 1.18821 1.37662 1.21437 0.94069 0.92352 0.95827 0.90714 1.21885 0.99276 0.94554 1.00933 1.21841 0.99101 0.99902 0.96430 1.21358 1.02282 0.80588 0.97269 1.45498 1.63669 1.09602 1.19182 1.20051 0.77267 0.88755 0.83012 1.90769 1.54517 1.15279 1.79837 1.22997 1.01824 0.93824 0.94999 0.92299 0.89243 0.89308 0.76875 0.91868 0.91532 0.91345 0.88966 0.83001 0.90509 0.89890 0.89392 0.90896 0.91609 0.90597 0.76530 0.89397 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.79 13.22 55.49 0.73 -26.06 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.70 9.50 30.94 0.29 -15.40 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 10 C -0.15 -3.29 6.16 36.00 0.22 -3.07 16 11 C 0.53 10.69 7.85 -10.99 -0.09 10.60 16 12 O -0.52 -12.61 15.86 5.56 0.09 -12.52 16 13 N -0.74 -10.98 5.56 -60.29 -0.33 -11.32 16 14 C 0.14 1.77 5.50 -4.04 -0.02 1.75 16 15 C -0.13 -1.25 3.75 -89.81 -0.34 -1.59 16 16 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 17 C -0.13 -1.04 7.22 -25.92 -0.19 -1.22 16 18 C 0.07 0.56 3.60 -66.81 -0.24 0.32 16 19 H 0.07 0.58 7.47 -51.93 -0.39 0.20 16 20 N -0.66 -4.98 6.26 -100.23 -0.63 -5.60 16 21 C 0.08 0.49 2.75 -69.08 -0.19 0.30 16 22 H 0.08 0.45 7.46 -51.93 -0.39 0.07 16 23 C -0.13 -0.44 5.28 -26.54 -0.14 -0.58 16 24 C -0.13 -0.28 6.02 -26.62 -0.16 -0.44 16 25 C 0.11 0.31 7.16 -4.48 -0.03 0.28 16 26 N -0.73 -4.48 5.45 -61.39 -0.33 -4.82 16 27 C 0.52 4.79 7.44 -11.87 -0.09 4.70 16 28 O -0.53 -7.07 14.94 5.55 0.08 -6.98 16 29 C -0.10 -1.08 5.96 -25.83 -0.15 -1.23 16 30 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 32 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 33 H 0.40 4.85 8.47 -40.82 -0.35 4.50 16 34 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.07 0.96 7.87 -51.92 -0.41 0.55 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.35 1.92 8.17 -39.29 -0.32 1.60 16 39 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.08 0.34 8.13 -51.93 -0.42 -0.08 16 41 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.07 0.16 8.13 -51.93 -0.42 -0.26 16 43 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 45 H 0.40 2.35 8.80 -40.82 -0.36 1.99 16 46 H 0.09 1.16 7.92 -51.93 -0.41 0.75 16 47 H 0.07 0.87 7.69 -51.93 -0.40 0.47 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -38.27 394.02 -10.54 -48.82 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.63 Total: 3.11 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.22 Total: -3.56 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.56 Total: -47.80 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.17 Total: -19.50 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.27 -10.54 -48.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691691308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.706 kcal (2) G-P(sol) polarization free energy of solvation -38.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds