Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86805 * 119.99847 * 2 1 4 4 H 1.48497 * 109.46604 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46851 * 299.99500 * 3 2 1 6 6 H 1.48493 * 109.47197 * 59.99627 * 3 2 1 7 7 C 1.38801 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99925 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99914 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46864 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00418 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99527 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99809 * 180.02562 * 13 11 10 15 15 C 1.53510 * 114.17114 * 204.99849 * 14 13 11 16 16 N 1.47476 * 87.93219 * 220.13630 * 15 14 13 17 17 C 1.46901 * 111.00120 * 138.70160 * 16 15 14 18 18 C 1.52993 * 109.47229 * 169.99488 * 17 16 15 19 19 H 1.09001 * 108.57142 * 302.93698 * 18 17 16 20 20 C 1.51780 * 108.61700 * 184.99954 * 18 17 16 21 21 C 1.52987 * 110.84146 * 172.05308 * 20 18 17 22 22 N 1.47135 * 108.68506 * 86.51078 * 21 20 18 23 23 C 1.33376 * 120.39300 * 287.94517 * 22 21 20 24 24 O 1.21276 * 119.89354 * 180.32118 * 23 22 21 25 25 C 1.51419 * 120.21235 * 0.34277 * 23 22 21 26 26 C 1.51793 * 108.50348 * 60.81262 * 18 17 16 27 27 C 1.47480 * 87.83744 * 27.01037 * 16 15 14 28 28 H 0.96999 * 119.99820 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47214 * 60.00220 * 10 9 7 30 30 H 1.09002 * 109.47417 * 299.99908 * 10 9 7 31 31 H 0.96996 * 120.00627 * 359.97438 * 13 11 10 32 32 H 1.09005 * 113.25374 * 337.94273 * 14 13 11 33 33 H 1.09006 * 113.47647 * 105.36793 * 15 14 13 34 34 H 1.09000 * 113.47442 * 334.90239 * 15 14 13 35 35 H 1.09007 * 109.46738 * 49.99760 * 17 16 15 36 36 H 1.08991 * 109.47430 * 290.00437 * 17 16 15 37 37 H 1.09002 * 109.19806 * 292.39309 * 20 18 17 38 38 H 1.08998 * 109.19291 * 51.71920 * 20 18 17 39 39 H 1.09005 * 109.60711 * 206.19194 * 21 20 18 40 40 H 1.09004 * 109.60798 * 326.68365 * 21 20 18 41 41 H 0.96996 * 119.82484 * 107.96429 * 22 21 20 42 42 H 1.08999 * 109.63554 * 311.49986 * 25 23 22 43 43 H 1.09000 * 109.63304 * 190.90084 * 25 23 22 44 44 H 1.09004 * 109.22051 * 308.17948 * 26 18 17 45 45 H 1.08998 * 109.22685 * 67.56800 * 26 18 17 46 46 H 1.08993 * 113.47363 * 87.75743 * 27 16 15 47 47 H 1.08996 * 113.47270 * 218.22807 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7911 -5.5023 0.0019 13 7 2.8442 -6.3431 0.0020 14 6 2.3305 -7.7151 0.0018 15 6 3.2986 -8.7488 0.5939 16 7 2.8893 -9.6698 -0.4828 17 6 4.0465 -10.3961 -1.0226 18 6 3.5610 -11.5106 -1.9515 19 1 2.8886 -12.1608 -1.3919 20 6 4.7610 -12.3250 -2.3995 21 6 4.3170 -13.5692 -3.1710 22 7 4.1445 -13.2092 -4.5872 23 6 3.1129 -12.4560 -4.9711 24 8 2.9763 -12.1695 -6.1416 25 6 2.1121 -11.9570 -3.9502 26 6 2.7862 -10.8813 -3.0951 27 6 2.5799 -8.4840 -1.3032 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7309 0.8908 30 1 3.1238 -3.7317 -0.8892 31 1 3.8009 -6.1835 0.0015 32 1 1.3102 -7.7926 0.3776 33 1 3.0138 -9.0903 1.5891 34 1 4.3446 -8.4483 0.5339 35 1 4.6180 -10.8301 -0.2021 36 1 4.6794 -9.7070 -1.5816 37 1 5.3913 -11.7106 -3.0424 38 1 5.3331 -12.6315 -1.5239 39 1 5.0772 -14.3453 -3.0822 40 1 3.3717 -13.9321 -2.7672 41 1 4.7845 -13.5216 -5.2457 42 1 1.7939 -12.7836 -3.3149 43 1 1.2490 -11.5308 -4.4615 44 1 2.0242 -10.2160 -2.6890 45 1 3.4704 -10.3052 -3.7181 46 1 3.4341 -8.1129 -1.8694 47 1 1.6859 -8.6011 -1.9158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692171222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = -43.465296 kcal Electronic energy + Delta-G solvation = -26763.396895 eV Core-core repulsion = 22880.043705 eV Total energy + Delta-G solvation = -3883.353190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11534 -40.32688 -38.72822 -37.31649 -34.91041 -33.58958 -32.44277 -31.92229 -30.21497 -28.84230 -26.69147 -26.12220 -25.47850 -24.55455 -23.05047 -20.92926 -20.47610 -20.32335 -19.97701 -17.84048 -17.69879 -17.28564 -16.75244 -16.47835 -15.97590 -15.75264 -15.15744 -14.82861 -14.80477 -14.53199 -14.41591 -14.31433 -13.99341 -13.70347 -13.37255 -13.11382 -13.00706 -12.93394 -12.61367 -12.55020 -12.39324 -12.22825 -11.95740 -11.64351 -11.17656 -11.08352 -11.04167 -11.01082 -10.92559 -10.83295 -10.74623 -10.09808 -9.82565 -9.61172 -9.57231 -9.23745 -9.09304 -8.93224 -8.25393 -6.51863 -6.23333 -3.94020 2.31101 2.88275 2.93763 2.98908 3.20528 3.25480 3.30155 3.51735 3.80044 4.05568 4.12947 4.18655 4.21992 4.25268 4.36036 4.54667 4.69237 4.76657 4.81356 4.83328 4.95710 4.97681 5.03580 5.08432 5.10809 5.12011 5.26216 5.32561 5.36571 5.38366 5.48167 5.52587 5.56909 5.59995 5.83186 5.84358 5.86798 5.93090 5.94993 6.10292 6.37768 6.52156 6.66200 6.83053 7.58176 7.62012 7.86834 8.33773 8.54257 9.22170 10.84116 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.001747 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.376613 B =16027.959004 C =16565.642229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.513 6.513 13 N -0.729 5.729 14 C 0.125 3.875 15 C -0.011 4.011 16 N -0.465 5.465 17 C 0.023 3.977 18 C -0.081 4.081 19 H 0.082 0.918 20 C -0.138 4.138 21 C 0.110 3.890 22 N -0.727 5.727 23 C 0.517 3.483 24 O -0.553 6.553 25 C -0.137 4.137 26 C -0.114 4.114 27 C -0.020 4.020 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 -29.273 -1.564 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.386 6.386 13 N -0.383 5.383 14 C 0.018 3.982 15 C -0.141 4.141 16 N -0.187 5.187 17 C -0.106 4.106 18 C -0.100 4.100 19 H 0.100 0.900 20 C -0.177 4.177 21 C -0.015 4.015 22 N -0.380 5.380 23 C 0.304 3.696 24 O -0.431 6.431 25 C -0.178 4.178 26 C -0.152 4.152 27 C -0.150 4.150 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.147 0.853 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.235 0.765 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.262 -29.806 -1.904 31.581 hybrid contribution 3.590 1.699 -0.378 3.989 sum 13.851 -28.108 -2.283 31.418 Atomic orbital electron populations 1.70027 1.05942 1.27377 1.46870 1.25001 0.95037 0.99054 0.94530 0.86112 0.79559 0.81877 0.77919 1.19638 1.20552 1.20555 1.22905 0.94932 0.91636 1.58917 0.90877 1.85416 1.04812 0.96344 1.96713 1.23542 1.06668 0.95358 1.04940 1.20368 0.86579 0.86314 0.74672 1.90709 1.15329 1.85518 1.47074 1.45962 1.09773 1.05007 1.77523 1.22500 1.00047 0.79976 0.95698 1.24268 0.98744 0.92726 0.98338 1.68838 1.29312 1.14434 1.06085 1.22795 0.92672 0.96925 0.98171 1.20746 0.96722 0.96534 0.95950 0.89999 1.21877 0.98201 0.96869 1.00754 1.21753 1.02451 0.96875 0.80387 1.45980 1.28457 1.53394 1.10129 1.20722 0.82208 0.77165 0.89505 1.90767 1.75428 1.57541 1.19351 1.21991 0.97946 1.00363 0.97458 1.21450 1.00327 0.97503 0.95883 1.24619 1.02501 0.90343 0.97548 0.92208 0.89172 0.89215 0.76782 0.85344 0.88837 0.91012 0.90645 0.93534 0.91153 0.90330 0.89462 0.90301 0.76549 0.89183 0.88364 0.89056 0.92012 0.90858 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.50 7.85 -10.98 -0.09 9.41 16 12 O -0.51 -11.25 15.45 5.56 0.09 -11.16 16 13 N -0.73 -8.88 5.39 -53.54 -0.29 -9.17 16 14 C 0.12 1.33 4.59 -67.72 -0.31 1.02 16 15 C -0.01 -0.08 7.45 -7.55 -0.06 -0.14 16 16 N -0.46 -3.58 6.03 -244.67 -1.47 -5.05 16 17 C 0.02 0.13 4.34 -3.83 -0.02 0.12 16 18 C -0.08 -0.40 1.93 -91.85 -0.18 -0.58 16 19 H 0.08 0.42 7.88 -51.93 -0.41 0.01 16 20 C -0.14 -0.48 4.98 -27.36 -0.14 -0.61 16 21 C 0.11 0.32 6.46 -3.70 -0.02 0.29 16 22 N -0.73 -4.19 5.27 -59.94 -0.32 -4.50 16 23 C 0.52 4.75 7.06 -11.25 -0.08 4.67 16 24 O -0.55 -7.79 17.92 5.56 0.10 -7.69 16 25 C -0.14 -0.97 5.57 -27.50 -0.15 -1.13 16 26 C -0.11 -0.77 4.45 -27.31 -0.12 -0.89 16 27 C -0.02 -0.18 5.87 -7.55 -0.04 -0.23 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 31 H 0.40 3.66 8.75 -40.82 -0.36 3.31 16 32 H 0.13 1.67 7.45 -51.93 -0.39 1.29 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.45 7.90 -51.93 -0.41 0.04 16 35 H 0.08 0.37 8.01 -51.93 -0.42 -0.04 16 36 H 0.05 0.28 7.30 -51.93 -0.38 -0.10 16 37 H 0.07 0.33 8.05 -51.93 -0.42 -0.09 16 38 H 0.08 0.17 8.05 -51.93 -0.42 -0.25 16 39 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.08 0.20 6.70 -51.93 -0.35 -0.15 16 41 H 0.40 2.02 8.91 -40.82 -0.36 1.65 16 42 H 0.09 0.46 6.77 -51.93 -0.35 0.11 16 43 H 0.10 0.77 8.13 -51.93 -0.42 0.35 16 44 H 0.09 0.70 5.00 -51.93 -0.26 0.44 16 45 H 0.06 0.50 7.86 -51.93 -0.41 0.09 16 46 H 0.07 0.63 7.42 -51.93 -0.39 0.25 16 47 H 0.09 0.93 6.92 -51.93 -0.36 0.57 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -36.80 386.22 -10.69 -47.48 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.33 Total: 0.81 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.79 Total: -3.71 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -1.35 Total: -44.01 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.19 Total: -18.85 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.80 -10.69 -47.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692171222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.019 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds