Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86805 * 119.99847 * 2 1 4 4 H 1.48497 * 109.46604 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46851 * 299.99500 * 3 2 1 6 6 H 1.48493 * 109.47197 * 59.99627 * 3 2 1 7 7 C 1.38801 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99925 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99914 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46864 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00418 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99527 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99809 * 180.02562 * 13 11 10 15 15 C 1.53510 * 114.17114 * 204.99849 * 14 13 11 16 16 N 1.47476 * 87.93219 * 220.13630 * 15 14 13 17 17 C 1.46901 * 111.00120 * 138.70160 * 16 15 14 18 18 C 1.52993 * 109.47229 * 169.99488 * 17 16 15 19 19 H 1.09001 * 108.57142 * 302.93698 * 18 17 16 20 20 C 1.51780 * 108.61700 * 184.99954 * 18 17 16 21 21 C 1.52987 * 110.84146 * 172.05308 * 20 18 17 22 22 N 1.47135 * 108.68506 * 86.51078 * 21 20 18 23 23 C 1.33376 * 120.39300 * 287.94517 * 22 21 20 24 24 O 1.21276 * 119.89354 * 180.32118 * 23 22 21 25 25 C 1.51419 * 120.21235 * 0.34277 * 23 22 21 26 26 C 1.51793 * 108.50348 * 60.81262 * 18 17 16 27 27 C 1.47480 * 87.83744 * 27.01037 * 16 15 14 28 28 H 0.96999 * 119.99820 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47214 * 60.00220 * 10 9 7 30 30 H 1.09002 * 109.47417 * 299.99908 * 10 9 7 31 31 H 0.96996 * 120.00627 * 359.97438 * 13 11 10 32 32 H 1.09005 * 113.25374 * 337.94273 * 14 13 11 33 33 H 1.09006 * 113.47647 * 105.36793 * 15 14 13 34 34 H 1.09000 * 113.47442 * 334.90239 * 15 14 13 35 35 H 1.09007 * 109.46738 * 49.99760 * 17 16 15 36 36 H 1.08991 * 109.47430 * 290.00437 * 17 16 15 37 37 H 1.09002 * 109.19806 * 292.39309 * 20 18 17 38 38 H 1.08998 * 109.19291 * 51.71920 * 20 18 17 39 39 H 1.09005 * 109.60711 * 206.19194 * 21 20 18 40 40 H 1.09004 * 109.60798 * 326.68365 * 21 20 18 41 41 H 0.96996 * 119.82484 * 107.96429 * 22 21 20 42 42 H 1.08999 * 109.63554 * 311.49986 * 25 23 22 43 43 H 1.09000 * 109.63304 * 190.90084 * 25 23 22 44 44 H 1.09004 * 109.22051 * 308.17948 * 26 18 17 45 45 H 1.08998 * 109.22685 * 67.56800 * 26 18 17 46 46 H 1.08993 * 113.47363 * 87.75743 * 27 16 15 47 47 H 1.08996 * 113.47270 * 218.22807 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7911 -5.5023 0.0019 13 7 2.8442 -6.3431 0.0020 14 6 2.3305 -7.7151 0.0018 15 6 3.2986 -8.7488 0.5939 16 7 2.8893 -9.6698 -0.4828 17 6 4.0465 -10.3961 -1.0226 18 6 3.5610 -11.5106 -1.9515 19 1 2.8886 -12.1608 -1.3919 20 6 4.7610 -12.3250 -2.3995 21 6 4.3170 -13.5692 -3.1710 22 7 4.1445 -13.2092 -4.5872 23 6 3.1129 -12.4560 -4.9711 24 8 2.9763 -12.1695 -6.1416 25 6 2.1121 -11.9570 -3.9502 26 6 2.7862 -10.8813 -3.0951 27 6 2.5799 -8.4840 -1.3032 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7309 0.8908 30 1 3.1238 -3.7317 -0.8892 31 1 3.8009 -6.1835 0.0015 32 1 1.3102 -7.7926 0.3776 33 1 3.0138 -9.0903 1.5891 34 1 4.3446 -8.4483 0.5339 35 1 4.6180 -10.8301 -0.2021 36 1 4.6794 -9.7070 -1.5816 37 1 5.3913 -11.7106 -3.0424 38 1 5.3331 -12.6315 -1.5239 39 1 5.0772 -14.3453 -3.0822 40 1 3.3717 -13.9321 -2.7672 41 1 4.7845 -13.5216 -5.2457 42 1 1.7939 -12.7836 -3.3149 43 1 1.2490 -11.5308 -4.4615 44 1 2.0242 -10.2160 -2.6890 45 1 3.4704 -10.3052 -3.7181 46 1 3.4341 -8.1129 -1.8694 47 1 1.6859 -8.6011 -1.9158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692171222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = -74.147039 kcal Electronic energy + Delta-G solvation = -26764.727355 eV Core-core repulsion = 22880.043705 eV Total energy + Delta-G solvation = -3884.683650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82411 -41.06626 -39.98175 -37.97064 -35.60523 -34.63646 -34.56332 -32.50721 -31.26829 -29.82271 -27.70315 -27.33845 -26.72092 -25.12364 -23.66451 -21.83756 -21.36524 -21.00827 -20.58016 -19.77500 -18.27780 -17.98033 -17.90269 -17.44327 -16.88228 -16.80660 -16.51134 -16.18964 -16.10151 -15.55258 -15.21521 -14.97049 -14.86780 -14.63634 -14.44120 -14.24844 -13.81402 -13.74726 -13.53697 -13.44280 -13.16596 -13.15954 -12.97925 -12.91990 -12.59247 -12.48201 -12.40251 -11.80980 -11.68820 -11.57466 -11.44884 -11.32192 -11.15928 -10.99344 -10.83878 -10.26764 -10.11238 -10.07141 -9.88773 -8.66375 -8.34841 -6.12666 1.27085 1.41377 1.47276 1.58012 1.58529 1.61583 2.21768 2.27948 2.40142 2.99427 3.02093 3.32956 3.47800 3.53884 3.73565 3.76908 3.79600 3.95569 4.01406 4.13691 4.25386 4.31393 4.34602 4.39131 4.46365 4.51452 4.52832 4.58571 4.63493 4.70481 4.83515 4.86197 4.91171 4.92005 5.01452 5.10468 5.15177 5.32885 5.34761 5.42257 5.45246 5.50789 5.90323 6.05749 6.20057 6.27205 6.49750 7.06699 7.23757 7.24450 8.74559 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.001747 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.376613 B =16027.959004 C =16565.642229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.701 5.701 14 C 0.108 3.892 15 C 0.006 3.994 16 N -0.468 5.468 17 C 0.023 3.977 18 C -0.076 4.076 19 H 0.089 0.911 20 C -0.132 4.132 21 C 0.105 3.895 22 N -0.715 5.715 23 C 0.511 3.489 24 O -0.614 6.614 25 C -0.133 4.133 26 C -0.108 4.108 27 C -0.013 4.013 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.417 0.583 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.402 0.598 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.670 -30.839 -0.298 35.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.355 5.355 14 C 0.002 3.998 15 C -0.123 4.123 16 N -0.191 5.191 17 C -0.106 4.106 18 C -0.095 4.095 19 H 0.107 0.893 20 C -0.171 4.171 21 C -0.018 4.018 22 N -0.365 5.365 23 C 0.299 3.701 24 O -0.497 6.497 25 C -0.173 4.173 26 C -0.146 4.146 27 C -0.143 4.143 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.239 0.761 42 H 0.133 0.867 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.868 -31.443 -0.598 34.371 hybrid contribution 2.557 2.008 -0.749 3.336 sum 16.426 -29.435 -1.347 33.735 Atomic orbital electron populations 1.70193 1.07975 1.28531 1.48087 1.26141 0.95975 1.03361 0.93800 0.84900 0.78636 0.76341 0.78039 1.17958 1.20052 1.19922 1.23241 0.95362 0.91990 1.58698 0.89842 1.85608 1.10644 0.99304 1.97045 1.23381 1.03526 0.94365 1.06854 1.20097 0.86295 0.86717 0.74643 1.90700 1.17494 1.86036 1.49895 1.45665 1.10084 1.04511 1.75200 1.22633 0.99896 0.79389 0.97895 1.24220 0.98913 0.90781 0.98435 1.68852 1.30708 1.13814 1.05686 1.22876 0.91940 0.96876 0.98865 1.20736 0.97336 0.96544 0.94874 0.89320 1.21838 0.97313 0.96467 1.01484 1.22057 1.04059 0.97458 0.78208 1.46035 1.27103 1.51608 1.11787 1.21071 0.83030 0.77078 0.88884 1.90734 1.77055 1.60141 1.21747 1.21965 0.97024 1.01176 0.97185 1.21381 0.99869 0.97149 0.96217 1.24521 1.02315 0.90751 0.96670 0.92015 0.87015 0.87248 0.74523 0.88150 0.88150 0.88643 0.88681 0.93509 0.92280 0.87904 0.86535 0.89270 0.76147 0.86733 0.89919 0.90208 0.93700 0.89970 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.94 9.50 67.95 0.65 -30.29 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 11 C 0.54 18.99 7.85 87.66 0.69 19.68 16 12 O -0.56 -25.63 15.45 -3.03 -0.05 -25.68 16 13 N -0.70 -15.99 5.39 -441.68 -2.38 -18.37 16 14 C 0.11 2.20 4.59 45.45 0.21 2.41 16 15 C 0.01 0.07 7.45 83.57 0.62 0.69 16 16 N -0.47 -6.12 6.03 -927.98 -5.59 -11.71 16 17 C 0.02 0.19 4.34 86.30 0.37 0.56 16 18 C -0.08 -0.55 1.93 -11.59 -0.02 -0.58 16 19 H 0.09 0.59 7.88 -2.39 -0.02 0.57 16 20 C -0.13 -0.45 4.98 30.19 0.15 -0.30 16 21 C 0.10 0.26 6.46 86.25 0.56 0.81 16 22 N -0.72 -7.18 5.27 -462.72 -2.44 -9.62 16 23 C 0.51 9.40 7.06 88.10 0.62 10.03 16 24 O -0.61 -18.17 17.92 -3.02 -0.05 -18.23 16 25 C -0.13 -1.85 5.57 30.10 0.17 -1.68 16 26 C -0.11 -1.39 4.45 30.22 0.13 -1.26 16 27 C -0.01 -0.22 5.87 83.57 0.49 0.28 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 30 H 0.11 3.76 8.14 -2.39 -0.02 3.75 16 31 H 0.42 6.40 8.75 -92.71 -0.81 5.59 16 32 H 0.10 2.70 7.45 -2.38 -0.02 2.68 16 33 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.10 0.77 7.90 -2.39 -0.02 0.75 16 35 H 0.09 0.48 8.01 -2.38 -0.02 0.46 16 36 H 0.05 0.41 7.30 -2.39 -0.02 0.40 16 37 H 0.06 0.38 8.05 -2.39 -0.02 0.37 16 38 H 0.10 -0.06 8.05 -2.39 -0.02 -0.08 16 39 H 0.12 -0.30 8.14 -2.38 -0.02 -0.32 16 40 H 0.09 0.11 6.70 -2.38 -0.02 0.09 16 41 H 0.40 3.58 8.91 -92.71 -0.83 2.75 16 42 H 0.11 0.97 6.77 -2.39 -0.02 0.96 16 43 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 44 H 0.08 1.22 5.00 -2.38 -0.01 1.21 16 45 H 0.04 0.72 7.86 -2.39 -0.02 0.70 16 46 H 0.08 1.26 7.42 -2.39 -0.02 1.25 16 47 H 0.08 1.60 6.92 -2.39 -0.02 1.59 16 Total: -1.00 -85.49 386.22 -4.45 -89.95 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.64 Total: 16.56 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.54 Total: -3.05 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -10.13 Total: -95.43 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.10 Total: -43.91 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -85.49 -4.45 -89.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692171222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.801 kcal (2) G-P(sol) polarization free energy of solvation -85.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds