Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48493 * 109.47266 * 180.27708 * 3 2 1 5 5 H 1.48497 * 109.47030 * 300.27892 * 3 2 1 6 6 H 1.48502 * 109.46926 * 60.28003 * 3 2 1 7 7 C 1.38812 * 119.99654 * 180.27937 * 2 1 3 8 8 H 1.08004 * 119.99617 * 179.72042 * 7 2 1 9 9 N 1.36941 * 120.00329 * 359.72348 * 7 2 1 10 10 C 1.46495 * 120.00086 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47095 * 174.90568 * 10 9 7 12 12 N 1.46500 * 110.01668 * 54.98805 * 11 10 9 13 13 C 1.34776 * 119.99520 * 65.00459 * 12 11 10 14 14 O 1.21553 * 120.00489 * 354.94280 * 13 12 11 15 15 C 1.47850 * 119.99604 * 174.94487 * 13 12 11 16 16 C 1.40592 * 120.28041 * 359.97438 * 15 13 12 17 17 N 1.30821 * 121.52314 * 179.97438 * 16 15 13 18 18 C 1.33756 * 121.79333 * 0.02562 * 17 16 15 19 19 N 1.33891 * 120.62098 * 180.02562 * 18 17 16 20 20 C 1.31323 * 119.84957 * 179.97438 * 19 18 17 21 21 C 1.39757 * 120.77937 * 359.97438 * 20 19 18 22 22 N 1.31310 * 120.55196 * 0.04680 * 21 20 19 23 23 C 1.33665 * 119.70462 * 359.94931 * 22 21 20 24 24 C 1.38906 * 120.27435 * 179.72603 * 15 13 12 25 25 C 1.54266 * 110.03232 * 293.54823 * 11 10 9 26 26 C 1.54884 * 104.19709 * 217.10771 * 25 11 10 27 27 C 1.54886 * 102.74993 * 37.93961 * 26 25 11 28 28 C 1.53873 * 110.03261 * 176.38356 * 11 10 9 29 29 H 0.96997 * 119.99994 * 359.71856 * 1 2 3 30 30 H 0.96997 * 119.99430 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47044 * 294.90854 * 10 9 7 32 32 H 1.09006 * 109.46975 * 54.90406 * 10 9 7 33 33 H 0.96993 * 119.99983 * 245.00420 * 12 11 10 34 34 H 1.08006 * 119.23926 * 0.02562 * 16 15 13 35 35 H 1.08004 * 119.61011 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.72784 * 180.02562 * 21 20 19 37 37 H 1.07995 * 121.00466 * 359.97438 * 24 15 13 38 38 H 1.09003 * 110.48543 * 335.78591 * 25 11 10 39 39 H 1.09000 * 110.48948 * 98.42295 * 25 11 10 40 40 H 1.09003 * 110.75615 * 279.62384 * 26 25 11 41 41 H 1.09000 * 110.76274 * 156.25628 * 26 25 11 42 42 H 1.09005 * 110.49236 * 203.37836 * 27 26 25 43 43 H 1.09004 * 110.48655 * 80.74424 * 27 26 25 44 44 H 1.08998 * 110.02983 * 238.57421 * 28 11 10 45 45 H 1.09005 * 110.03365 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0068 5 1 1.8864 2.3993 -1.2091 6 1 1.8966 2.3934 1.2159 7 6 2.0102 -1.2022 -0.0059 8 1 3.0903 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0580 -3.6568 -0.0115 11 6 1.0691 -4.8172 0.1177 12 7 0.0548 -4.7313 -0.9359 13 6 0.4117 -4.8724 -2.2278 14 8 1.5852 -4.9788 -2.5262 15 6 -0.6244 -4.8977 -3.2823 16 6 -1.9835 -4.7756 -2.9439 17 7 -2.9201 -4.7943 -3.8570 18 6 -2.6346 -4.9307 -5.1566 19 7 -3.6120 -4.9463 -6.0716 20 6 -3.3145 -5.0806 -7.3436 21 6 -1.9858 -5.2074 -7.7578 22 7 -1.0090 -5.1955 -6.8802 23 6 -1.2883 -5.0599 -5.5801 24 6 -0.2627 -5.0371 -4.6162 25 6 0.3954 -4.7853 1.5051 26 6 0.2558 -6.2780 1.8940 27 6 1.5699 -6.8959 1.3553 28 6 1.8159 -6.1592 0.0225 29 1 -0.4850 0.8400 0.0041 30 1 0.3556 -2.3880 -0.0015 31 1 2.6109 -3.7530 -0.9459 32 1 2.7546 -3.6779 0.8267 33 1 -0.8735 -4.5730 -0.7036 34 1 -2.2607 -4.6629 -1.9061 35 1 -4.1060 -5.0931 -8.0783 36 1 -1.7604 -5.3164 -8.8083 37 1 0.7740 -5.1284 -4.9049 38 1 1.0260 -4.2613 2.2234 39 1 -0.5854 -4.3140 1.4422 40 1 -0.6100 -6.7251 1.4055 41 1 0.1911 -6.3909 2.9762 42 1 1.4463 -7.9651 1.1829 43 1 2.3902 -6.7130 2.0494 44 1 1.4231 -6.7469 -0.8072 45 1 2.8828 -5.9838 -0.1163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698630751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = 64.883592 kcal Electronic energy + Delta-G solvation = -29545.235489 eV Core-core repulsion = 25563.429459 eV Total energy + Delta-G solvation = -3981.806030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.92861 -40.32435 -38.61334 -37.39170 -35.25796 -34.33619 -33.44547 -32.15772 -31.55165 -30.80305 -28.68125 -28.15381 -26.18454 -25.34747 -24.47890 -23.05948 -22.28106 -21.91792 -20.67801 -19.63948 -18.98656 -18.59740 -17.87514 -17.09914 -16.69254 -15.99782 -15.82217 -15.35320 -15.21390 -14.92330 -14.54715 -14.49347 -14.37908 -13.87350 -13.48946 -13.21904 -13.11579 -13.08198 -12.88188 -12.69768 -12.12218 -12.02265 -11.94138 -11.61227 -11.23506 -11.02169 -10.95343 -10.92314 -10.84045 -10.71001 -10.50744 -10.44394 -10.01567 -9.77973 -9.66737 -9.56441 -9.42662 -9.03234 -8.82320 -8.69043 -6.85820 -5.74776 -3.01130 -0.33440 -0.03826 1.49230 2.16666 3.08853 3.20356 3.24577 3.44593 3.50976 3.52707 3.70337 3.76590 3.80151 4.29439 4.37333 4.50862 4.55900 4.63432 4.71519 4.75560 4.80359 4.96086 5.02322 5.28499 5.49604 5.54801 5.56243 5.62579 5.63467 5.69194 5.76056 5.84983 5.93353 5.99966 6.04539 6.17385 6.25152 6.32451 6.46544 6.48967 6.55013 6.63077 6.85529 7.04617 7.13879 7.61561 7.68064 7.74512 8.36552 8.44801 9.56518 10.14090 10.49688 11.48464 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.003731 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.856859 B = 7503.078044 C = 9554.706660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.231 4.231 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.145 3.855 11 C 0.170 3.830 12 N -0.701 5.701 13 C 0.569 3.431 14 O -0.518 6.518 15 C -0.167 4.167 16 C 0.197 3.803 17 N -0.456 5.456 18 C 0.271 3.729 19 N -0.418 5.418 20 C 0.110 3.890 21 C 0.070 3.930 22 N -0.404 5.404 23 C 0.019 3.981 24 C 0.037 3.963 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.253 0.747 30 H 0.381 0.619 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.396 0.604 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 -16.863 -8.317 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.017 3.983 11 C 0.084 3.916 12 N -0.352 5.352 13 C 0.354 3.646 14 O -0.394 6.394 15 C -0.175 4.175 16 C 0.019 3.981 17 N -0.165 5.165 18 C 0.031 3.969 19 N -0.133 5.133 20 C -0.070 4.070 21 C -0.107 4.107 22 N -0.119 5.119 23 C -0.107 4.107 24 C 0.009 3.991 25 C -0.156 4.156 26 C -0.163 4.163 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.063 0.937 30 H 0.215 0.785 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.232 0.768 34 H 0.193 0.807 35 H 0.201 0.799 36 H 0.199 0.801 37 H 0.184 0.816 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.525 -16.742 -8.119 19.410 hybrid contribution 0.426 1.210 -0.314 1.321 sum -5.099 -15.532 -8.433 18.394 Atomic orbital electron populations 1.69647 1.05013 1.25358 1.58445 1.24677 0.95506 0.97496 1.03373 0.86149 0.78867 0.84326 0.77101 1.20601 1.22035 1.21942 1.19275 0.91055 0.84177 1.41766 0.91284 1.42205 1.05620 0.99743 1.89494 1.21172 0.92995 0.84947 0.99228 1.21334 0.88485 0.95762 0.86006 1.45951 1.11542 1.72474 1.05242 1.17607 0.87628 0.77122 0.82225 1.90784 1.17788 1.48916 1.81947 1.21295 0.95669 1.05377 0.95134 1.23337 0.87072 0.88261 0.99393 1.67476 1.36536 1.13274 0.99210 1.20087 0.88170 0.96550 0.92052 1.68322 1.34527 1.09074 1.01358 1.24310 0.97561 0.92279 0.92829 1.24215 0.89757 0.95714 1.01038 1.68602 1.35778 1.06925 1.00569 1.20206 0.94160 1.03648 0.92671 1.21790 1.00282 0.87395 0.89635 1.22600 1.01517 0.96190 0.95252 1.22543 0.97588 0.95734 1.00466 1.22386 0.97802 0.99047 0.96976 1.22418 1.01230 0.94669 0.97306 0.93729 0.78527 0.94385 0.95409 0.76807 0.80701 0.79932 0.80056 0.81607 0.89392 0.90841 0.91753 0.91556 0.92016 0.91505 0.91488 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.96 13.06 55.49 0.72 -27.24 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.77 29.55 -169.99 -5.02 17.74 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.23 -6.50 9.99 -15.06 -0.15 -6.65 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -17.92 5.28 -59.91 -0.32 -18.24 16 10 C 0.14 2.95 4.63 -4.04 -0.02 2.93 16 11 C 0.17 2.61 0.57 -130.70 -0.07 2.54 16 12 N -0.70 -10.22 4.44 -47.50 -0.21 -10.43 16 13 C 0.57 9.14 6.82 -12.33 -0.08 9.05 16 14 O -0.52 -9.82 13.65 5.32 0.07 -9.74 16 15 C -0.17 -2.38 5.88 -104.83 -0.62 -3.00 16 16 C 0.20 2.57 10.68 -17.09 -0.18 2.39 16 17 N -0.46 -6.79 10.39 -12.28 -0.13 -6.92 16 18 C 0.27 3.97 7.60 -157.60 -1.20 2.77 16 19 N -0.42 -5.43 10.55 -12.39 -0.13 -5.56 16 20 C 0.11 0.91 11.21 -17.20 -0.19 0.71 16 21 C 0.07 0.56 11.22 -17.21 -0.19 0.37 16 22 N -0.40 -4.90 10.46 -10.77 -0.11 -5.01 16 23 C 0.02 0.27 6.59 -84.78 -0.56 -0.29 16 24 C 0.04 0.52 9.68 -38.38 -0.37 0.15 16 25 C -0.12 -1.60 5.75 -25.08 -0.14 -1.75 16 26 C -0.13 -1.34 6.91 -24.74 -0.17 -1.52 16 27 C -0.12 -1.37 6.83 -25.08 -0.17 -1.54 16 28 C -0.12 -1.60 5.22 -25.62 -0.13 -1.73 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.38 9.60 7.19 -40.82 -0.29 9.31 16 31 H 0.04 0.87 6.55 -51.93 -0.34 0.53 16 32 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 33 H 0.40 4.85 6.28 -40.82 -0.26 4.59 16 34 H 0.18 1.75 6.39 -52.48 -0.34 1.41 16 35 H 0.18 0.64 8.06 -52.48 -0.42 0.21 16 36 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.17 2.29 7.70 -52.49 -0.40 1.88 16 38 H 0.09 1.33 7.78 -51.93 -0.40 0.93 16 39 H 0.07 0.99 7.70 -51.93 -0.40 0.59 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.93 7.00 -51.93 -0.36 0.57 16 45 H 0.07 1.09 7.67 -51.93 -0.40 0.69 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -36.31 370.92 -9.59 -45.90 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.70 Total: 10.00 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -4.36 Total: 3.91 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -0.17 Total: -73.40 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.74 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.31 -9.59 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698630751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.780 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds