Wall clock time and date at job start Sat Apr 11 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48493 * 109.47266 * 180.27708 * 3 2 1 5 5 H 1.48497 * 109.47030 * 300.27892 * 3 2 1 6 6 H 1.48502 * 109.46926 * 60.28003 * 3 2 1 7 7 C 1.38812 * 119.99654 * 180.27937 * 2 1 3 8 8 H 1.08004 * 119.99617 * 179.72042 * 7 2 1 9 9 N 1.36941 * 120.00329 * 359.72348 * 7 2 1 10 10 C 1.46495 * 120.00086 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47095 * 174.90568 * 10 9 7 12 12 N 1.46500 * 110.01668 * 54.98805 * 11 10 9 13 13 C 1.34776 * 119.99520 * 65.00459 * 12 11 10 14 14 O 1.21553 * 120.00489 * 354.94280 * 13 12 11 15 15 C 1.47850 * 119.99604 * 174.94487 * 13 12 11 16 16 C 1.40592 * 120.28041 * 359.97438 * 15 13 12 17 17 N 1.30821 * 121.52314 * 179.97438 * 16 15 13 18 18 C 1.33756 * 121.79333 * 0.02562 * 17 16 15 19 19 N 1.33891 * 120.62098 * 180.02562 * 18 17 16 20 20 C 1.31323 * 119.84957 * 179.97438 * 19 18 17 21 21 C 1.39757 * 120.77937 * 359.97438 * 20 19 18 22 22 N 1.31310 * 120.55196 * 0.04680 * 21 20 19 23 23 C 1.33665 * 119.70462 * 359.94931 * 22 21 20 24 24 C 1.38906 * 120.27435 * 179.72603 * 15 13 12 25 25 C 1.54266 * 110.03232 * 293.54823 * 11 10 9 26 26 C 1.54884 * 104.19709 * 217.10771 * 25 11 10 27 27 C 1.54886 * 102.74993 * 37.93961 * 26 25 11 28 28 C 1.53873 * 110.03261 * 176.38356 * 11 10 9 29 29 H 0.96997 * 119.99994 * 359.71856 * 1 2 3 30 30 H 0.96997 * 119.99430 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47044 * 294.90854 * 10 9 7 32 32 H 1.09006 * 109.46975 * 54.90406 * 10 9 7 33 33 H 0.96993 * 119.99983 * 245.00420 * 12 11 10 34 34 H 1.08006 * 119.23926 * 0.02562 * 16 15 13 35 35 H 1.08004 * 119.61011 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.72784 * 180.02562 * 21 20 19 37 37 H 1.07995 * 121.00466 * 359.97438 * 24 15 13 38 38 H 1.09003 * 110.48543 * 335.78591 * 25 11 10 39 39 H 1.09000 * 110.48948 * 98.42295 * 25 11 10 40 40 H 1.09003 * 110.75615 * 279.62384 * 26 25 11 41 41 H 1.09000 * 110.76274 * 156.25628 * 26 25 11 42 42 H 1.09005 * 110.49236 * 203.37836 * 27 26 25 43 43 H 1.09004 * 110.48655 * 80.74424 * 27 26 25 44 44 H 1.08998 * 110.02983 * 238.57421 * 28 11 10 45 45 H 1.09005 * 110.03365 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0068 5 1 1.8864 2.3993 -1.2091 6 1 1.8966 2.3934 1.2159 7 6 2.0102 -1.2022 -0.0059 8 1 3.0903 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0580 -3.6568 -0.0115 11 6 1.0691 -4.8172 0.1177 12 7 0.0548 -4.7313 -0.9359 13 6 0.4117 -4.8724 -2.2278 14 8 1.5852 -4.9788 -2.5262 15 6 -0.6244 -4.8977 -3.2823 16 6 -1.9835 -4.7756 -2.9439 17 7 -2.9201 -4.7943 -3.8570 18 6 -2.6346 -4.9307 -5.1566 19 7 -3.6120 -4.9463 -6.0716 20 6 -3.3145 -5.0806 -7.3436 21 6 -1.9858 -5.2074 -7.7578 22 7 -1.0090 -5.1955 -6.8802 23 6 -1.2883 -5.0599 -5.5801 24 6 -0.2627 -5.0371 -4.6162 25 6 0.3954 -4.7853 1.5051 26 6 0.2558 -6.2780 1.8940 27 6 1.5699 -6.8959 1.3553 28 6 1.8159 -6.1592 0.0225 29 1 -0.4850 0.8400 0.0041 30 1 0.3556 -2.3880 -0.0015 31 1 2.6109 -3.7530 -0.9459 32 1 2.7546 -3.6779 0.8267 33 1 -0.8735 -4.5730 -0.7036 34 1 -2.2607 -4.6629 -1.9061 35 1 -4.1060 -5.0931 -8.0783 36 1 -1.7604 -5.3164 -8.8083 37 1 0.7740 -5.1284 -4.9049 38 1 1.0260 -4.2613 2.2234 39 1 -0.5854 -4.3140 1.4422 40 1 -0.6100 -6.7251 1.4055 41 1 0.1911 -6.3909 2.9762 42 1 1.4463 -7.9651 1.1829 43 1 2.3902 -6.7130 2.0494 44 1 1.4231 -6.7469 -0.8072 45 1 2.8828 -5.9838 -0.1163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698630751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:54 Heat of formation + Delta-G solvation = 38.059562 kcal Electronic energy + Delta-G solvation = -29546.398666 eV Core-core repulsion = 25563.429459 eV Total energy + Delta-G solvation = -3982.969207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.85289 -41.54170 -39.63271 -38.57848 -36.17882 -36.14762 -34.75170 -33.29568 -32.98263 -32.16350 -29.80927 -29.54146 -27.20781 -26.38542 -26.10844 -24.10724 -23.97248 -23.04168 -21.67964 -20.73181 -20.19113 -19.58244 -19.17208 -18.85308 -17.68745 -17.25587 -16.81027 -16.53994 -16.26507 -16.19214 -15.84022 -15.69044 -15.61624 -15.30777 -15.00252 -14.59753 -14.51024 -14.11313 -13.93983 -13.89339 -13.54832 -13.23431 -13.04076 -12.88207 -12.85717 -12.67111 -12.29979 -12.16278 -12.01478 -11.92066 -11.87744 -11.75907 -11.71157 -11.36881 -11.14272 -10.81920 -10.60035 -10.36786 -10.00587 -9.94482 -8.95137 -7.96145 -5.21835 -1.26312 -0.94120 0.53080 1.22830 1.43429 1.44444 1.54002 1.92603 2.10820 2.35418 2.54103 2.79363 2.82789 2.91689 3.33391 3.37994 3.46022 3.50928 3.61719 3.72953 3.76378 3.90988 3.93843 4.19660 4.29224 4.31025 4.42542 4.54278 4.57907 4.62207 4.71316 4.75926 4.83861 4.87735 4.95463 5.12288 5.12614 5.21832 5.22774 5.28403 5.37354 5.47732 5.53015 5.66156 5.78416 6.26698 6.28979 6.47309 6.69994 7.13385 7.34639 8.09416 8.37508 9.26905 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.003731 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.856859 B = 7503.078044 C = 9554.706660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.068 4.068 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.288 1.288 7 C -0.242 4.242 8 H 0.065 0.935 9 N -0.730 5.730 10 C 0.147 3.853 11 C 0.173 3.827 12 N -0.693 5.693 13 C 0.568 3.432 14 O -0.555 6.555 15 C -0.178 4.178 16 C 0.196 3.804 17 N -0.477 5.477 18 C 0.251 3.749 19 N -0.455 5.455 20 C 0.133 3.867 21 C 0.091 3.909 22 N -0.435 5.435 23 C 0.003 3.997 24 C 0.030 3.970 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.117 4.117 28 C -0.113 4.113 29 H 0.250 0.750 30 H 0.377 0.623 31 H 0.011 0.989 32 H 0.027 0.973 33 H 0.408 0.592 34 H 0.200 0.800 35 H 0.238 0.762 36 H 0.236 0.764 37 H 0.159 0.841 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 -17.933 -9.498 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.215 1.215 7 C -0.374 4.374 8 H 0.083 0.917 9 N -0.373 5.373 10 C 0.019 3.981 11 C 0.087 3.913 12 N -0.345 5.345 13 C 0.354 3.646 14 O -0.434 6.434 15 C -0.185 4.185 16 C 0.019 3.981 17 N -0.186 5.186 18 C 0.012 3.988 19 N -0.171 5.171 20 C -0.047 4.047 21 C -0.086 4.086 22 N -0.150 5.150 23 C -0.121 4.121 24 C 0.002 3.998 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.151 4.151 29 H 0.059 0.941 30 H 0.210 0.790 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.246 0.754 34 H 0.216 0.784 35 H 0.254 0.746 36 H 0.252 0.748 37 H 0.177 0.823 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.798 -17.835 -9.237 21.204 hybrid contribution 0.792 1.514 -0.241 1.725 sum -6.006 -16.321 -9.478 19.806 Atomic orbital electron populations 1.69775 1.06147 1.25772 1.59630 1.25391 0.96390 1.00437 1.03882 0.85191 0.78169 0.80428 0.76723 1.19643 1.22426 1.21519 1.19581 0.91186 0.85669 1.40937 0.91711 1.42277 1.05521 1.00355 1.89142 1.21220 0.94000 0.85313 0.97558 1.21265 0.88078 0.94557 0.87382 1.45892 1.12046 1.71756 1.04762 1.17901 0.87512 0.76295 0.82843 1.90757 1.19337 1.50776 1.82550 1.21128 0.95725 1.07026 0.94637 1.23602 0.86294 0.87902 1.00279 1.67492 1.37040 1.14124 0.99932 1.20327 0.88894 0.97162 0.92398 1.68411 1.34472 1.11208 1.02970 1.25341 0.99245 0.88082 0.92071 1.25219 0.89045 0.91755 1.02629 1.68667 1.37450 1.08706 1.00140 1.20156 0.93673 1.04654 0.93588 1.21834 1.00314 0.87546 0.90112 1.22561 1.00830 0.98634 0.93366 1.22509 0.97914 0.92913 1.01749 1.22376 0.98203 0.99837 0.95091 1.22351 0.99895 0.93789 0.99112 0.94088 0.78969 0.97111 0.95514 0.75417 0.78376 0.74562 0.74797 0.82305 0.91047 0.90718 0.90194 0.89724 0.89946 0.91054 0.91803 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.37 13.06 21.65 0.28 -58.09 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 8 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 9 N -0.73 -37.15 5.28 -343.45 -1.81 -38.96 16 10 C 0.15 6.24 4.63 86.38 0.40 6.64 16 11 C 0.17 5.44 0.57 4.33 0.00 5.44 16 12 N -0.69 -20.78 4.44 -422.47 -1.88 -22.65 16 13 C 0.57 19.20 6.82 86.79 0.59 19.80 16 14 O -0.56 -22.41 13.65 -3.88 -0.05 -22.46 16 15 C -0.18 -5.35 5.88 -20.00 -0.12 -5.47 16 16 C 0.20 5.29 10.68 85.42 0.91 6.20 16 17 N -0.48 -14.49 10.39 -192.75 -2.00 -16.49 16 18 C 0.25 7.36 7.60 134.96 1.03 8.39 16 19 N -0.46 -11.15 10.55 -193.11 -2.04 -13.18 16 20 C 0.13 1.70 11.21 85.14 0.95 2.65 16 21 C 0.09 1.15 11.22 85.14 0.96 2.11 16 22 N -0.43 -10.05 10.46 -187.99 -1.97 -12.01 16 23 C 0.00 0.10 6.59 40.35 0.27 0.36 16 24 C 0.03 0.90 9.68 23.05 0.22 1.12 16 25 C -0.12 -3.10 5.75 31.67 0.18 -2.91 16 26 C -0.11 -2.16 6.91 31.88 0.22 -1.94 16 27 C -0.12 -2.36 6.83 31.67 0.22 -2.15 16 28 C -0.11 -3.08 5.22 31.32 0.16 -2.92 16 29 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.38 19.56 7.19 -92.71 -0.67 18.89 16 31 H 0.01 0.53 6.55 -2.39 -0.02 0.52 16 32 H 0.03 1.14 8.04 -2.38 -0.02 1.12 16 33 H 0.41 10.09 6.28 -92.71 -0.58 9.51 16 34 H 0.20 4.02 6.39 -2.91 -0.02 4.00 16 35 H 0.24 0.25 8.06 -2.91 -0.02 0.23 16 36 H 0.24 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.16 4.81 7.70 -2.91 -0.02 4.79 16 38 H 0.07 2.15 7.78 -2.39 -0.02 2.14 16 39 H 0.07 1.97 7.70 -2.39 -0.02 1.95 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.79 7.00 -2.39 -0.02 1.78 16 45 H 0.06 1.78 7.67 -2.38 -0.02 1.76 16 Total: -1.00 -82.62 370.92 -0.33 -82.95 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.19 Total: 30.77 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 7.30 Total: 20.76 kcal Atomic # 7 Polarization: -151.98 SS G_CDS: -9.41 Total: -161.39 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -82.62 -0.33 -82.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698630751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.007 kcal (2) G-P(sol) polarization free energy of solvation -82.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds