Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48501 * 109.46968 * 269.99917 * 3 2 1 5 5 H 1.48502 * 109.46981 * 29.99518 * 3 2 1 6 6 H 1.48489 * 109.47467 * 149.99771 * 3 2 1 7 7 C 1.38799 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99791 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00321 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00081 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47176 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99864 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00340 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00452 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47371 * 180.02562 * 14 13 11 16 16 H 1.08999 * 112.78468 * 284.19607 * 15 14 13 17 17 C 1.53508 * 113.47352 * 153.38419 * 15 14 13 18 18 C 1.53514 * 83.57044 * 219.20874 * 17 15 14 19 19 N 1.47475 * 113.47340 * 54.99965 * 15 14 13 20 20 C 1.46896 * 111.00035 * 253.46931 * 19 15 14 21 21 C 1.53012 * 109.47252 * 199.21321 * 20 19 15 22 22 N 1.46500 * 109.47153 * 185.02802 * 21 20 19 23 23 C 1.46760 * 124.35283 * 269.99908 * 22 21 20 24 24 C 1.54471 * 105.47302 * 196.99930 * 23 22 21 25 25 C 1.54627 * 101.76734 * 334.58063 * 24 23 22 26 26 C 1.34422 * 124.34438 * 89.97993 * 22 21 20 27 27 O 1.21280 * 124.94585 * 359.33866 * 26 22 21 28 28 H 0.97002 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47488 * 59.99574 * 10 9 7 30 30 H 1.09002 * 109.47393 * 299.99766 * 10 9 7 31 31 H 0.97009 * 119.99981 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.46456 * 59.99991 * 14 13 11 33 33 H 1.09002 * 109.46889 * 300.00524 * 14 13 11 34 34 H 1.08998 * 114.17316 * 105.56887 * 17 15 14 35 35 H 1.08994 * 114.34421 * 332.86515 * 17 15 14 36 36 H 1.09000 * 113.47772 * 271.25716 * 18 17 15 37 37 H 1.09007 * 113.47725 * 140.79318 * 18 17 15 38 38 H 1.08996 * 109.47352 * 79.21614 * 20 19 15 39 39 H 1.09000 * 109.47637 * 319.21217 * 20 19 15 40 40 H 1.09001 * 109.46470 * 65.02603 * 21 20 19 41 41 H 1.08997 * 109.46931 * 305.03179 * 21 20 19 42 42 H 1.09001 * 110.24098 * 315.99913 * 23 22 21 43 43 H 1.09000 * 110.24429 * 77.99308 * 23 22 21 44 44 H 1.08994 * 110.97483 * 92.70306 * 24 23 22 45 45 H 1.09001 * 110.96782 * 216.42918 * 24 23 22 46 46 H 1.08998 * 110.48864 * 266.12499 * 25 24 23 47 47 H 1.09001 * 110.48557 * 143.47877 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0457 -4.4946 0.0026 14 6 7.4908 -4.7358 0.0032 15 6 7.7564 -6.2425 0.0031 16 1 7.5866 -6.7012 0.9772 17 6 9.1026 -6.6260 -0.6272 18 6 8.3004 -7.7988 -1.2083 19 7 7.0948 -6.9556 -1.1054 20 6 5.9476 -7.7343 -0.6201 21 6 5.5869 -8.8069 -1.6500 22 7 4.3712 -9.5043 -1.2233 23 6 4.3581 -10.7045 -0.3789 24 6 2.9510 -11.3170 -0.5551 25 6 2.1149 -10.0778 -0.9505 26 6 3.1244 -9.1267 -1.5548 27 8 2.8486 -8.1611 -2.2348 28 1 -0.4850 0.8401 -0.0004 29 1 3.6440 -3.4314 -0.8892 30 1 3.6434 -3.4318 0.8907 31 1 5.4291 -5.2435 0.0019 32 1 7.9333 -4.2884 0.8933 33 1 7.9340 -4.2889 -0.8868 34 1 9.8652 -6.9207 0.0937 35 1 9.4662 -5.9205 -1.3742 36 1 8.2758 -8.6729 -0.5575 37 1 8.5721 -8.0445 -2.2350 38 1 5.0951 -7.0715 -0.4720 39 1 6.2058 -8.2109 0.3256 40 1 6.4058 -9.5214 -1.7323 41 1 5.4155 -8.3374 -2.6186 42 1 5.1204 -11.4086 -0.7125 43 1 4.5240 -10.4339 0.6638 44 1 2.9462 -12.0611 -1.3515 45 1 2.5930 -11.7474 0.3802 46 1 1.6516 -9.6332 -0.0698 47 1 1.3572 -10.3478 -1.6861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699615397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = -30.042589 kcal Electronic energy + Delta-G solvation = -27263.653273 eV Core-core repulsion = 23380.882136 eV Total energy + Delta-G solvation = -3882.771138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08201 -40.43659 -38.89590 -36.71663 -34.55468 -34.02641 -32.36792 -31.09749 -30.00084 -27.96751 -27.59780 -26.99436 -25.53512 -23.56851 -22.85663 -22.16284 -20.48257 -20.04929 -19.63836 -17.85833 -17.38475 -16.93979 -16.55294 -16.40572 -16.05155 -15.76865 -15.21774 -15.05991 -14.89092 -14.51170 -14.37753 -14.05784 -13.82822 -13.75650 -13.60110 -13.31497 -13.03964 -12.98291 -12.73369 -12.54757 -12.29013 -12.01031 -11.90498 -11.71970 -11.64043 -11.43821 -11.30767 -11.20243 -10.94745 -10.91392 -10.50885 -10.05194 -9.79342 -9.46993 -9.28515 -9.12896 -8.94192 -8.83537 -8.42186 -6.83601 -6.21804 -3.92779 2.31551 2.51893 2.84326 3.09059 3.32590 3.39223 3.55885 3.57874 3.77866 3.95519 4.00724 4.02868 4.31359 4.34939 4.39675 4.45544 4.53748 4.62825 4.77628 4.81404 4.82616 4.89981 4.94080 4.99122 5.05680 5.17100 5.21919 5.25517 5.27669 5.32043 5.38835 5.44217 5.45406 5.50461 5.61421 5.70581 5.85135 5.85593 5.90559 6.13247 6.14227 6.60056 6.64738 6.75716 7.71121 7.88785 8.01522 8.49984 8.59831 9.24398 10.87597 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.002822 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.917621 B = 9919.214849 C =12416.986234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.522 6.522 13 N -0.730 5.730 14 C 0.140 3.860 15 C 0.016 3.984 16 H 0.084 0.916 17 C -0.134 4.134 18 C -0.006 4.006 19 N -0.458 5.458 20 C 0.002 3.998 21 C 0.132 3.868 22 N -0.623 5.623 23 C 0.102 3.898 24 C -0.132 4.132 25 C -0.157 4.157 26 C 0.513 3.487 27 O -0.517 6.517 28 H 0.270 0.730 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.396 0.604 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.400 -29.640 1.196 33.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.667 4.667 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.397 6.397 13 N -0.385 5.385 14 C 0.016 3.984 15 C -0.094 4.094 16 H 0.102 0.898 17 C -0.172 4.172 18 C -0.135 4.135 19 N -0.181 5.181 20 C -0.128 4.128 21 C 0.009 3.991 22 N -0.359 5.359 23 C -0.021 4.021 24 C -0.170 4.170 25 C -0.197 4.197 26 C 0.300 3.700 27 O -0.392 6.392 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.133 -27.065 0.224 31.510 hybrid contribution -0.968 -1.324 0.815 1.832 sum 15.165 -28.389 1.039 32.202 Atomic orbital electron populations 1.69944 1.05915 1.27670 1.48296 1.24712 0.94446 0.98932 0.93247 0.86728 0.81881 0.83268 0.79934 1.19205 1.20004 1.15921 1.22339 0.88338 0.97551 1.58502 0.89407 1.84714 1.09209 1.00177 1.97413 1.23274 0.94178 1.04236 1.05758 1.20247 0.90536 0.82290 0.75210 1.90685 1.58772 1.42190 1.48082 1.45887 1.07341 1.07915 1.77352 1.21238 0.81995 0.92694 1.02519 1.23760 0.95098 0.95757 0.94799 0.89775 1.23173 0.95269 0.98239 1.00503 1.23755 0.91497 0.95808 1.02444 1.69041 1.01678 1.16500 1.30911 1.23133 0.96253 0.96443 0.96984 1.21251 0.85556 0.93644 0.98631 1.48260 1.06405 1.29316 1.51921 1.22090 0.98562 0.86443 0.95034 1.22589 0.93786 0.97167 1.03413 1.22357 0.98253 0.95696 1.03380 1.21007 0.83957 0.85281 0.79722 1.90815 1.82001 1.28246 1.38107 0.92008 0.88453 0.88731 0.76946 0.91229 0.90888 0.90170 0.88189 0.91316 0.89255 0.89946 0.93647 0.90466 0.88885 0.90440 0.91140 0.89946 0.89053 0.87540 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.48 13.97 55.49 0.78 -26.71 16 2 C 0.10 2.88 5.50 -17.43 -0.10 2.79 16 3 Si 0.86 22.54 27.74 -169.99 -4.72 17.83 16 4 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.24 -6.17 6.74 56.52 0.38 -5.79 16 7 C -0.52 -15.68 10.04 30.94 0.31 -15.37 16 8 H 0.09 2.77 8.03 -52.49 -0.42 2.35 16 9 S -0.14 -3.79 18.55 -107.50 -1.99 -5.78 16 10 C -0.12 -2.64 6.16 36.00 0.22 -2.42 16 11 C 0.53 10.35 7.85 -10.99 -0.09 10.27 16 12 O -0.52 -11.97 15.86 5.56 0.09 -11.88 16 13 N -0.73 -10.65 5.46 -60.29 -0.33 -10.98 16 14 C 0.14 1.67 5.82 -4.04 -0.02 1.65 16 15 C 0.02 0.13 3.25 -71.46 -0.23 -0.10 16 16 H 0.08 0.60 7.62 -51.93 -0.40 0.21 16 17 C -0.13 -0.82 8.00 -26.20 -0.21 -1.03 16 18 C -0.01 -0.04 6.64 -7.56 -0.05 -0.09 16 19 N -0.46 -3.98 6.05 -236.54 -1.43 -5.41 16 20 C 0.00 0.01 4.93 -3.82 -0.02 0.00 16 21 C 0.13 1.04 5.82 -4.04 -0.02 1.01 16 22 N -0.62 -4.93 2.93 -172.41 -0.51 -5.44 16 23 C 0.10 0.43 7.35 -3.13 -0.02 0.40 16 24 C -0.13 -0.46 7.18 -25.10 -0.18 -0.64 16 25 C -0.16 -1.04 6.86 -26.74 -0.18 -1.22 16 26 C 0.51 5.59 8.02 -10.86 -0.09 5.50 16 27 O -0.52 -8.43 17.60 5.56 0.10 -8.33 16 28 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.10 2.03 8.14 -51.92 -0.42 1.60 16 30 H 0.09 1.88 8.14 -51.92 -0.42 1.45 16 31 H 0.40 5.16 6.34 -40.82 -0.26 4.90 16 32 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.68 7.94 -51.93 -0.41 0.26 16 36 H 0.07 0.30 7.83 -51.93 -0.41 -0.10 16 37 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.08 0.89 6.59 -51.93 -0.34 0.55 16 39 H 0.05 0.31 7.56 -51.93 -0.39 -0.08 16 40 H 0.08 0.42 7.49 -51.93 -0.39 0.03 16 41 H 0.09 0.97 7.93 -51.93 -0.41 0.56 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -38.68 395.60 -10.38 -49.06 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.65 Total: 0.95 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.68 Total: 0.74 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -1.49 Total: -48.54 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.19 Total: -20.21 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.72 Total: 17.83 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -1.99 Total: -5.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.68 -10.38 -49.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699615397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.019 kcal (2) G-P(sol) polarization free energy of solvation -38.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds