Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48501 * 109.46968 * 269.99917 * 3 2 1 5 5 H 1.48502 * 109.46981 * 29.99518 * 3 2 1 6 6 H 1.48489 * 109.47467 * 149.99771 * 3 2 1 7 7 C 1.38799 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99791 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00321 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00081 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47176 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99864 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00340 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00452 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47371 * 180.02562 * 14 13 11 16 16 H 1.08999 * 112.78468 * 284.19607 * 15 14 13 17 17 C 1.53508 * 113.47352 * 153.38419 * 15 14 13 18 18 C 1.53514 * 83.57044 * 219.20874 * 17 15 14 19 19 N 1.47475 * 113.47340 * 54.99965 * 15 14 13 20 20 C 1.46896 * 111.00035 * 253.46931 * 19 15 14 21 21 C 1.53012 * 109.47252 * 199.21321 * 20 19 15 22 22 N 1.46500 * 109.47153 * 185.02802 * 21 20 19 23 23 C 1.46760 * 124.35283 * 269.99908 * 22 21 20 24 24 C 1.54471 * 105.47302 * 196.99930 * 23 22 21 25 25 C 1.54627 * 101.76734 * 334.58063 * 24 23 22 26 26 C 1.34422 * 124.34438 * 89.97993 * 22 21 20 27 27 O 1.21280 * 124.94585 * 359.33866 * 26 22 21 28 28 H 0.97002 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47488 * 59.99574 * 10 9 7 30 30 H 1.09002 * 109.47393 * 299.99766 * 10 9 7 31 31 H 0.97009 * 119.99981 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.46456 * 59.99991 * 14 13 11 33 33 H 1.09002 * 109.46889 * 300.00524 * 14 13 11 34 34 H 1.08998 * 114.17316 * 105.56887 * 17 15 14 35 35 H 1.08994 * 114.34421 * 332.86515 * 17 15 14 36 36 H 1.09000 * 113.47772 * 271.25716 * 18 17 15 37 37 H 1.09007 * 113.47725 * 140.79318 * 18 17 15 38 38 H 1.08996 * 109.47352 * 79.21614 * 20 19 15 39 39 H 1.09000 * 109.47637 * 319.21217 * 20 19 15 40 40 H 1.09001 * 109.46470 * 65.02603 * 21 20 19 41 41 H 1.08997 * 109.46931 * 305.03179 * 21 20 19 42 42 H 1.09001 * 110.24098 * 315.99913 * 23 22 21 43 43 H 1.09000 * 110.24429 * 77.99308 * 23 22 21 44 44 H 1.08994 * 110.97483 * 92.70306 * 24 23 22 45 45 H 1.09001 * 110.96782 * 216.42918 * 24 23 22 46 46 H 1.08998 * 110.48864 * 266.12499 * 25 24 23 47 47 H 1.09001 * 110.48557 * 143.47877 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0457 -4.4946 0.0026 14 6 7.4908 -4.7358 0.0032 15 6 7.7564 -6.2425 0.0031 16 1 7.5866 -6.7012 0.9772 17 6 9.1026 -6.6260 -0.6272 18 6 8.3004 -7.7988 -1.2083 19 7 7.0948 -6.9556 -1.1054 20 6 5.9476 -7.7343 -0.6201 21 6 5.5869 -8.8069 -1.6500 22 7 4.3712 -9.5043 -1.2233 23 6 4.3581 -10.7045 -0.3789 24 6 2.9510 -11.3170 -0.5551 25 6 2.1149 -10.0778 -0.9505 26 6 3.1244 -9.1267 -1.5548 27 8 2.8486 -8.1611 -2.2348 28 1 -0.4850 0.8401 -0.0004 29 1 3.6440 -3.4314 -0.8892 30 1 3.6434 -3.4318 0.8907 31 1 5.4291 -5.2435 0.0019 32 1 7.9333 -4.2884 0.8933 33 1 7.9340 -4.2889 -0.8868 34 1 9.8652 -6.9207 0.0937 35 1 9.4662 -5.9205 -1.3742 36 1 8.2758 -8.6729 -0.5575 37 1 8.5721 -8.0445 -2.2350 38 1 5.0951 -7.0715 -0.4720 39 1 6.2058 -8.2109 0.3256 40 1 6.4058 -9.5214 -1.7323 41 1 5.4155 -8.3374 -2.6186 42 1 5.1204 -11.4086 -0.7125 43 1 4.5240 -10.4339 0.6638 44 1 2.9462 -12.0611 -1.3515 45 1 2.5930 -11.7474 0.3802 46 1 1.6516 -9.6332 -0.0698 47 1 1.3572 -10.3478 -1.6861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699615397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = -60.899276 kcal Electronic energy + Delta-G solvation = -27264.991320 eV Core-core repulsion = 23380.882136 eV Total energy + Delta-G solvation = -3884.109184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76024 -41.16474 -40.33990 -37.53202 -35.72737 -34.75848 -34.70820 -31.91020 -31.28623 -28.71787 -28.47682 -27.86548 -27.58255 -24.29936 -23.46484 -22.65708 -21.88380 -20.75173 -20.34374 -19.91519 -18.05657 -17.97891 -17.65279 -17.39219 -17.11896 -16.99383 -16.63923 -16.42136 -15.85336 -15.79217 -15.30225 -15.10013 -14.94054 -14.71451 -14.64303 -14.51543 -14.31787 -13.96590 -13.58111 -13.38763 -13.37594 -13.14427 -13.02616 -12.78174 -12.73935 -12.57961 -12.32875 -12.17951 -11.96710 -11.89023 -11.79932 -11.57171 -11.20507 -11.03537 -10.88247 -10.61399 -10.17173 -9.89553 -9.76206 -9.04876 -8.54797 -6.26980 0.93229 1.29607 1.43393 1.48845 1.50985 1.52675 1.93481 2.16782 2.23505 2.65460 2.82899 3.00398 3.41453 3.45010 3.61956 3.72334 3.75834 3.84694 3.98893 4.05362 4.06437 4.10876 4.21584 4.28607 4.32050 4.36228 4.41463 4.51034 4.61693 4.67371 4.70693 4.79698 4.81618 4.86413 4.90947 5.01679 5.08941 5.19534 5.21430 5.25638 5.41299 5.56217 5.67029 6.02342 6.07162 6.11302 6.34463 6.89254 7.09689 7.11982 8.58197 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.002822 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.917621 B = 9919.214849 C =12416.986234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.254 1.254 6 H -0.235 1.235 7 C -0.535 4.535 8 H 0.056 0.944 9 S -0.164 6.164 10 C -0.114 4.114 11 C 0.535 3.465 12 O -0.559 6.559 13 N -0.709 5.709 14 C 0.135 3.865 15 C 0.020 3.980 16 H 0.104 0.896 17 C -0.125 4.125 18 C 0.001 3.999 19 N -0.489 5.489 20 C 0.009 3.991 21 C 0.132 3.868 22 N -0.618 5.618 23 C 0.096 3.904 24 C -0.119 4.119 25 C -0.156 4.156 26 C 0.495 3.505 27 O -0.590 6.590 28 H 0.278 0.722 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.405 0.595 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.829 -32.310 2.595 36.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.178 1.178 6 H -0.159 1.159 7 C -0.682 4.682 8 H 0.074 0.926 9 S 0.063 5.937 10 C -0.265 4.265 11 C 0.320 3.680 12 O -0.438 6.438 13 N -0.361 5.361 14 C 0.011 3.989 15 C -0.090 4.090 16 H 0.122 0.878 17 C -0.163 4.163 18 C -0.127 4.127 19 N -0.212 5.212 20 C -0.120 4.120 21 C 0.010 3.990 22 N -0.351 5.351 23 C -0.025 4.025 24 C -0.157 4.157 25 C -0.196 4.196 26 C 0.284 3.716 27 O -0.470 6.470 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.242 0.758 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.076 0.924 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.135 0.865 46 H 0.129 0.871 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.589 -29.837 1.652 35.193 hybrid contribution -1.692 -0.685 0.364 1.861 sum 16.898 -30.523 2.016 34.946 Atomic orbital electron populations 1.70022 1.07380 1.29165 1.48903 1.25617 0.95351 1.02407 0.92648 0.85821 0.80693 0.79229 0.80325 1.18659 1.17825 1.15905 1.22463 0.90346 0.96670 1.58735 0.92553 1.84539 1.06321 1.05296 1.97552 1.23262 0.96344 1.00204 1.06656 1.19873 0.89204 0.83493 0.75454 1.90668 1.59110 1.43583 1.50445 1.45766 1.09125 1.06364 1.74894 1.21499 0.79518 0.95888 1.01946 1.23805 0.96547 0.92798 0.95841 0.87825 1.23154 0.94720 0.97928 1.00494 1.23816 0.89401 0.96164 1.03281 1.69025 1.02860 1.18003 1.31339 1.23019 0.95153 0.95823 0.98048 1.21244 0.86471 0.94379 0.96943 1.48446 1.05498 1.29953 1.51248 1.22434 0.99738 0.85203 0.95155 1.22640 0.92463 0.95623 1.04952 1.22406 0.97742 0.96294 1.03162 1.21845 0.85837 0.84934 0.78962 1.90761 1.83311 1.31444 1.41524 0.91222 0.88253 0.87221 0.75841 0.90948 0.92319 0.87706 0.89228 0.88719 0.89024 0.93321 0.91219 0.87102 0.92449 0.87877 0.89603 0.88973 0.86518 0.87107 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.15 13.97 21.65 0.30 -57.84 16 2 C 0.05 2.78 5.50 84.86 0.47 3.24 16 3 Si 0.92 46.83 27.74 68.60 1.90 48.73 16 4 H -0.26 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.25 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.24 -11.93 6.74 99.48 0.67 -11.26 16 7 C -0.53 -33.20 10.04 67.95 0.68 -32.52 16 8 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 9 S -0.16 -8.89 18.55 -56.49 -1.05 -9.94 16 10 C -0.11 -4.94 6.16 71.24 0.44 -4.50 16 11 C 0.53 20.96 7.85 87.66 0.69 21.65 16 12 O -0.56 -25.84 15.86 -3.03 -0.05 -25.89 16 13 N -0.71 -20.44 5.46 -463.05 -2.53 -22.97 16 14 C 0.14 3.09 5.82 86.38 0.50 3.59 16 15 C 0.02 0.28 3.25 42.18 0.14 0.41 16 16 H 0.10 1.09 7.62 -2.39 -0.02 1.07 16 17 C -0.12 -1.16 8.00 30.94 0.25 -0.91 16 18 C 0.00 0.01 6.64 83.56 0.56 0.57 16 19 N -0.49 -7.66 6.05 -902.27 -5.46 -13.12 16 20 C 0.01 0.14 4.93 86.31 0.43 0.57 16 21 C 0.13 1.94 5.82 86.38 0.50 2.44 16 22 N -0.62 -9.06 2.93 -817.99 -2.40 -11.46 16 23 C 0.10 0.47 7.35 86.83 0.64 1.11 16 24 C -0.12 -0.47 7.18 31.65 0.23 -0.24 16 25 C -0.16 -1.97 6.86 30.59 0.21 -1.76 16 26 C 0.49 11.17 8.02 87.90 0.71 11.88 16 27 O -0.59 -20.97 17.60 -3.03 -0.05 -21.02 16 28 H 0.28 16.20 8.31 -92.71 -0.77 15.43 16 29 H 0.10 4.27 8.14 -2.40 -0.02 4.25 16 30 H 0.11 4.40 8.14 -2.39 -0.02 4.39 16 31 H 0.41 10.47 6.34 -92.70 -0.59 9.88 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.06 1.54 7.88 -2.39 -0.02 1.52 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.09 1.05 7.94 -2.39 -0.02 1.03 16 36 H 0.09 0.34 7.83 -2.39 -0.02 0.32 16 37 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.05 1.06 6.59 -2.39 -0.02 1.05 16 39 H 0.07 0.70 7.56 -2.39 -0.02 0.68 16 40 H 0.11 0.85 7.49 -2.39 -0.02 0.83 16 41 H 0.06 1.27 7.93 -2.39 -0.02 1.25 16 42 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -89.16 395.60 -2.56 -91.72 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.34 Total: 16.27 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.43 Total: 5.52 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -10.08 Total: -105.39 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.10 Total: -46.91 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -89.16 -2.56 -91.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699615397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.823 kcal (2) G-P(sol) polarization free energy of solvation -89.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds