Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99998 * 2 1 4 4 H 1.48491 * 109.47306 * 270.00237 * 3 2 1 5 5 H 1.48500 * 109.46672 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.46856 * 149.99847 * 3 2 1 7 7 C 1.38810 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99918 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00166 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00095 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47332 * 175.33504 * 10 9 7 12 12 H 1.09003 * 109.58542 * 309.12747 * 11 10 9 13 13 C 1.53195 * 109.59018 * 188.70076 * 11 10 9 14 14 C 1.53035 * 109.31236 * 185.57645 * 13 11 10 15 15 C 1.53045 * 109.53962 * 61.36783 * 14 13 11 16 16 C 1.53619 * 109.23864 * 298.50675 * 15 14 13 17 17 N 1.46925 * 108.54258 * 54.85769 * 16 15 14 18 18 C 1.34782 * 120.63309 * 126.36454 * 17 16 15 19 19 O 1.21548 * 120.00350 * 186.18340 * 18 17 16 20 20 C 1.47848 * 119.99679 * 6.19068 * 18 17 16 21 21 C 1.40597 * 120.28243 * 37.63627 * 20 18 17 22 22 N 1.30817 * 121.52251 * 179.97438 * 21 20 18 23 23 C 1.33753 * 121.79676 * 0.02562 * 22 21 20 24 24 N 1.33887 * 120.62098 * 179.97438 * 23 22 21 25 25 C 1.31330 * 119.84887 * 180.02562 * 24 23 22 26 26 C 1.39763 * 120.77470 * 359.96958 * 25 24 23 27 27 N 1.31305 * 120.55279 * 0.07825 * 26 25 24 28 28 C 1.33661 * 119.71051 * 359.90497 * 27 26 25 29 29 C 1.38906 * 120.27718 * 217.85482 * 20 18 17 30 30 H 0.97007 * 119.99642 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00067 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47470 * 55.33408 * 10 9 7 33 33 H 1.08999 * 109.47272 * 295.33622 * 10 9 7 34 34 H 1.09003 * 109.49678 * 305.52870 * 13 11 10 35 35 H 1.09002 * 109.49337 * 65.62565 * 13 11 10 36 36 H 1.09007 * 109.45641 * 181.38618 * 14 13 11 37 37 H 1.09000 * 109.46425 * 301.34172 * 14 13 11 38 38 H 1.08999 * 109.49749 * 58.57976 * 15 14 13 39 39 H 1.08999 * 109.49756 * 178.64620 * 15 14 13 40 40 H 1.08995 * 109.74337 * 295.11695 * 16 15 14 41 41 H 1.09003 * 109.66550 * 174.54753 * 16 15 14 42 42 H 1.08003 * 119.23709 * 0.02562 * 21 20 18 43 43 H 1.08007 * 119.61333 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.71755 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.99602 * 359.78757 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6121 -2.1936 -0.1199 12 1 5.7949 -1.5224 -0.9591 13 6 6.3623 -3.5111 -0.3394 14 6 7.8692 -3.2453 -0.3172 15 6 8.2698 -2.6833 1.0488 16 6 7.5408 -1.3512 1.2816 17 7 6.0975 -1.5742 1.1209 18 6 5.2345 -1.2123 2.0908 19 8 4.0579 -1.5024 1.9968 20 6 5.7190 -0.4622 3.2692 21 6 6.7147 0.5197 3.1243 22 7 7.1608 1.1981 4.1501 23 6 6.6947 0.9933 5.3869 24 7 7.1686 1.7009 6.4201 25 6 6.7004 1.4870 7.6283 26 6 5.7094 0.5272 7.8517 27 7 5.2288 -0.1804 6.8555 28 6 5.6902 0.0204 5.6172 29 6 5.1974 -0.7249 4.5296 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 3.7872 -3.0772 -0.8477 33 1 3.9133 -3.0060 0.9263 34 1 6.1049 -4.2129 0.4540 35 1 6.0815 -3.9332 -1.3044 36 1 8.4050 -4.1773 -0.4977 37 1 8.1224 -2.5247 -1.0948 38 1 7.9943 -3.3928 1.8291 39 1 9.3467 -2.5168 1.0721 40 1 7.8799 -0.6139 0.5541 41 1 7.7450 -0.9928 2.2906 42 1 7.1202 0.7191 2.1433 43 1 7.0851 2.0603 8.4590 44 1 5.3363 0.3657 8.8523 45 1 4.4319 -1.4738 4.6697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700344454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = 119.042137 kcal Electronic energy + Delta-G solvation = -30418.545624 eV Core-core repulsion = 26439.088085 eV Total energy + Delta-G solvation = -3979.457539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.89320 -40.51254 -38.40506 -37.14507 -35.25851 -34.74535 -33.04922 -32.25394 -31.93607 -31.01316 -30.34259 -26.84295 -26.16971 -25.26256 -24.47093 -23.19069 -22.47395 -21.94283 -20.93492 -20.09835 -19.16596 -18.14322 -18.00947 -17.26702 -16.32467 -15.89329 -15.69259 -15.45803 -15.11852 -14.96740 -14.61842 -14.44408 -14.26924 -13.93138 -13.67022 -13.49901 -13.22634 -12.92630 -12.83361 -12.66388 -12.48588 -12.39979 -12.04785 -11.95169 -11.89747 -11.36545 -11.18440 -10.95039 -10.93123 -10.80052 -10.71024 -10.36696 -10.09793 -9.52021 -9.50024 -9.31974 -9.13487 -8.87450 -8.60358 -8.35992 -6.95482 -5.69616 -2.90876 -0.26530 0.03092 1.58310 2.25047 2.96739 3.17890 3.28198 3.41216 3.43373 3.48785 3.75844 3.79261 3.83739 4.32776 4.39330 4.50982 4.60353 4.66228 4.66422 4.74780 4.79170 4.82810 4.95499 5.06967 5.20527 5.24761 5.34899 5.45374 5.56639 5.61648 5.64455 5.66095 5.73582 5.77299 5.85874 5.94948 5.95107 6.04528 6.12320 6.27802 6.43832 6.69373 6.72228 7.06277 7.21382 7.58854 7.66842 8.06973 8.47684 8.53142 9.28872 10.01725 10.21250 11.49309 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.004815 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.962897 B = 5813.766972 C = 7884.583823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.207 4.207 8 H 0.089 0.911 9 N -0.718 5.718 10 C 0.160 3.840 11 C 0.140 3.860 12 H 0.073 0.927 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.099 3.901 17 N -0.611 5.611 18 C 0.514 3.486 19 O -0.430 6.430 20 C -0.159 4.159 21 C 0.185 3.815 22 N -0.461 5.461 23 C 0.263 3.737 24 N -0.418 5.418 25 C 0.102 3.898 26 C 0.071 3.929 27 N -0.407 5.407 28 C 0.027 3.973 29 C 0.019 3.981 30 H 0.258 0.742 31 H 0.356 0.644 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.177 0.823 43 H 0.182 0.818 44 H 0.181 0.819 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.951 -3.436 10.109 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.197 4.197 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.338 4.338 8 H 0.107 0.893 9 N -0.361 5.361 10 C 0.033 3.967 11 C 0.037 3.963 12 H 0.090 0.910 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.171 4.171 16 C -0.024 4.024 17 N -0.349 5.349 18 C 0.298 3.702 19 O -0.297 6.297 20 C -0.167 4.167 21 C 0.008 3.992 22 N -0.170 5.170 23 C 0.023 3.977 24 N -0.133 5.133 25 C -0.077 4.077 26 C -0.106 4.106 27 N -0.121 5.121 28 C -0.100 4.100 29 C -0.009 4.009 30 H 0.068 0.932 31 H 0.189 0.811 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.194 0.806 43 H 0.199 0.801 44 H 0.198 0.802 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 20.640 -3.075 9.778 23.044 hybrid contribution 0.021 0.884 0.332 0.945 sum 20.660 -2.191 10.109 23.105 Atomic orbital electron populations 1.69695 1.05038 1.25561 1.58001 1.24591 0.95152 0.96908 1.03035 0.86560 0.79233 0.85421 0.77436 1.21315 1.21962 1.20776 1.19065 0.80731 0.94522 1.39463 0.89278 1.42716 1.03981 1.01908 1.87515 1.20965 0.86183 0.90201 0.99319 1.21613 0.95991 0.93529 0.85135 0.90955 1.21900 0.94656 0.97257 1.02745 1.21507 0.96122 1.01016 0.96917 1.21981 0.99768 0.97080 0.98308 1.22099 0.80699 0.97657 1.01981 1.47751 1.05954 1.63198 1.18024 1.17890 0.86427 0.82965 0.82895 1.91239 1.14764 1.49873 1.73874 1.21357 0.99363 1.00324 0.95642 1.23518 0.89769 0.88169 0.97772 1.67474 1.27182 1.24908 0.97434 1.20029 0.92743 0.92670 0.92274 1.68283 1.24292 1.22089 0.98662 1.24246 0.93292 0.95425 0.94772 1.24194 0.94248 0.92622 0.99550 1.68608 1.22714 1.22329 0.98498 1.20182 0.97897 0.98455 0.93425 1.21677 0.94994 0.95588 0.88625 0.93242 0.81118 0.95349 0.92977 0.91268 0.90512 0.91779 0.91732 0.91475 0.90967 0.91086 0.89939 0.80612 0.80107 0.80185 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.30 13.97 55.49 0.78 -29.52 16 2 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 3 Si 0.88 23.37 27.74 -169.99 -4.71 18.66 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 6 H -0.28 -7.15 6.52 56.52 0.37 -6.78 16 7 C -0.21 -6.04 10.19 -15.06 -0.15 -6.20 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 9 N -0.72 -17.42 3.05 -59.92 -0.18 -17.60 16 10 C 0.16 3.11 4.87 -4.05 -0.02 3.10 16 11 C 0.14 2.02 2.92 -67.60 -0.20 1.83 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 13 C -0.13 -1.39 5.36 -26.61 -0.14 -1.53 16 14 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 15 C -0.13 -1.12 6.10 -26.39 -0.16 -1.28 16 16 C 0.10 0.98 4.84 -3.49 -0.02 0.96 16 17 N -0.61 -8.50 2.97 -166.06 -0.49 -8.99 16 18 C 0.51 8.81 6.74 -12.33 -0.08 8.73 16 19 O -0.43 -9.41 10.72 5.32 0.06 -9.35 16 20 C -0.16 -2.44 5.21 -104.83 -0.55 -2.98 16 21 C 0.18 2.55 8.52 -17.09 -0.15 2.41 16 22 N -0.46 -7.03 10.39 -12.28 -0.13 -7.16 16 23 C 0.26 4.00 7.60 -157.60 -1.20 2.80 16 24 N -0.42 -5.64 10.55 -12.39 -0.13 -5.77 16 25 C 0.10 0.91 11.21 -17.20 -0.19 0.72 16 26 C 0.07 0.63 11.22 -17.21 -0.19 0.44 16 27 N -0.41 -5.37 10.46 -10.77 -0.11 -5.48 16 28 C 0.03 0.40 6.59 -84.79 -0.56 -0.16 16 29 C 0.02 0.30 9.73 -38.38 -0.37 -0.08 16 30 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 31 H 0.36 8.62 4.95 -40.82 -0.20 8.42 16 32 H 0.03 0.55 8.13 -51.93 -0.42 0.13 16 33 H 0.05 1.11 6.29 -51.93 -0.33 0.78 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.08 0.80 4.63 -51.93 -0.24 0.56 16 42 H 0.18 1.97 6.30 -52.48 -0.33 1.64 16 43 H 0.18 0.75 8.06 -52.48 -0.42 0.32 16 44 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.16 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -37.95 358.94 -9.51 -47.46 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.76 Total: 4.91 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -4.23 Total: 7.44 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -0.27 Total: -74.53 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.06 Total: -9.35 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.71 Total: 18.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.95 -9.51 -47.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700344454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.506 kcal (2) G-P(sol) polarization free energy of solvation -37.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds