Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99998 * 2 1 4 4 H 1.48491 * 109.47306 * 270.00237 * 3 2 1 5 5 H 1.48500 * 109.46672 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.46856 * 149.99847 * 3 2 1 7 7 C 1.38810 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99918 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00166 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00095 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47332 * 175.33504 * 10 9 7 12 12 H 1.09003 * 109.58542 * 309.12747 * 11 10 9 13 13 C 1.53195 * 109.59018 * 188.70076 * 11 10 9 14 14 C 1.53035 * 109.31236 * 185.57645 * 13 11 10 15 15 C 1.53045 * 109.53962 * 61.36783 * 14 13 11 16 16 C 1.53619 * 109.23864 * 298.50675 * 15 14 13 17 17 N 1.46925 * 108.54258 * 54.85769 * 16 15 14 18 18 C 1.34782 * 120.63309 * 126.36454 * 17 16 15 19 19 O 1.21548 * 120.00350 * 186.18340 * 18 17 16 20 20 C 1.47848 * 119.99679 * 6.19068 * 18 17 16 21 21 C 1.40597 * 120.28243 * 37.63627 * 20 18 17 22 22 N 1.30817 * 121.52251 * 179.97438 * 21 20 18 23 23 C 1.33753 * 121.79676 * 0.02562 * 22 21 20 24 24 N 1.33887 * 120.62098 * 179.97438 * 23 22 21 25 25 C 1.31330 * 119.84887 * 180.02562 * 24 23 22 26 26 C 1.39763 * 120.77470 * 359.96958 * 25 24 23 27 27 N 1.31305 * 120.55279 * 0.07825 * 26 25 24 28 28 C 1.33661 * 119.71051 * 359.90497 * 27 26 25 29 29 C 1.38906 * 120.27718 * 217.85482 * 20 18 17 30 30 H 0.97007 * 119.99642 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00067 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47470 * 55.33408 * 10 9 7 33 33 H 1.08999 * 109.47272 * 295.33622 * 10 9 7 34 34 H 1.09003 * 109.49678 * 305.52870 * 13 11 10 35 35 H 1.09002 * 109.49337 * 65.62565 * 13 11 10 36 36 H 1.09007 * 109.45641 * 181.38618 * 14 13 11 37 37 H 1.09000 * 109.46425 * 301.34172 * 14 13 11 38 38 H 1.08999 * 109.49749 * 58.57976 * 15 14 13 39 39 H 1.08999 * 109.49756 * 178.64620 * 15 14 13 40 40 H 1.08995 * 109.74337 * 295.11695 * 16 15 14 41 41 H 1.09003 * 109.66550 * 174.54753 * 16 15 14 42 42 H 1.08003 * 119.23709 * 0.02562 * 21 20 18 43 43 H 1.08007 * 119.61333 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.71755 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.99602 * 359.78757 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6121 -2.1936 -0.1199 12 1 5.7949 -1.5224 -0.9591 13 6 6.3623 -3.5111 -0.3394 14 6 7.8692 -3.2453 -0.3172 15 6 8.2698 -2.6833 1.0488 16 6 7.5408 -1.3512 1.2816 17 7 6.0975 -1.5742 1.1209 18 6 5.2345 -1.2123 2.0908 19 8 4.0579 -1.5024 1.9968 20 6 5.7190 -0.4622 3.2692 21 6 6.7147 0.5197 3.1243 22 7 7.1608 1.1981 4.1501 23 6 6.6947 0.9933 5.3869 24 7 7.1686 1.7009 6.4201 25 6 6.7004 1.4870 7.6283 26 6 5.7094 0.5272 7.8517 27 7 5.2288 -0.1804 6.8555 28 6 5.6902 0.0204 5.6172 29 6 5.1974 -0.7249 4.5296 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 3.7872 -3.0772 -0.8477 33 1 3.9133 -3.0060 0.9263 34 1 6.1049 -4.2129 0.4540 35 1 6.0815 -3.9332 -1.3044 36 1 8.4050 -4.1773 -0.4977 37 1 8.1224 -2.5247 -1.0948 38 1 7.9943 -3.3928 1.8291 39 1 9.3467 -2.5168 1.0721 40 1 7.8799 -0.6139 0.5541 41 1 7.7450 -0.9928 2.2906 42 1 7.1202 0.7191 2.1433 43 1 7.0851 2.0603 8.4590 44 1 5.3363 0.3657 8.8523 45 1 4.4319 -1.4738 4.6697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700344454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 89.985734 kcal Electronic energy + Delta-G solvation = -30419.805604 eV Core-core repulsion = 26439.088085 eV Total energy + Delta-G solvation = -3980.717519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.91764 -41.70482 -39.45104 -38.30985 -36.61000 -36.11816 -34.25149 -33.78240 -33.06538 -32.26835 -31.74039 -28.10855 -27.27722 -26.43819 -25.58131 -24.31353 -23.95528 -23.21460 -22.16593 -21.03205 -20.34250 -19.68350 -19.12703 -18.68792 -17.40670 -17.01199 -16.76672 -16.63472 -16.45783 -16.10577 -15.79844 -15.74703 -15.49702 -15.27520 -14.89249 -14.61084 -14.57001 -14.20493 -13.97078 -13.90451 -13.81524 -13.71537 -13.40775 -13.07491 -12.91461 -12.89509 -12.69203 -12.29341 -12.06734 -11.97447 -11.85788 -11.73724 -11.51301 -11.41001 -10.99089 -10.63177 -10.38094 -10.18374 -9.87946 -9.64031 -8.95937 -7.98062 -5.21042 -1.24468 -0.95210 0.53949 1.25235 1.26400 1.32611 1.37849 1.80147 1.97986 2.34003 2.47991 2.76816 2.78998 2.88273 3.29310 3.34415 3.37363 3.52640 3.64043 3.70621 3.83168 3.92962 3.93825 4.06788 4.25405 4.28851 4.29556 4.31434 4.36388 4.56442 4.57673 4.67071 4.73985 4.86692 4.94991 5.02969 5.10718 5.15032 5.20521 5.25598 5.31153 5.51555 5.71014 5.76534 5.79279 6.25088 6.27460 6.38462 6.66741 7.13833 7.22855 7.92932 8.10712 9.25531 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.004815 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.962897 B = 5813.766972 C = 7884.583823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.993 5.993 2 C -0.073 4.073 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.304 1.304 6 H -0.267 1.267 7 C -0.193 4.193 8 H 0.049 0.951 9 N -0.724 5.724 10 C 0.161 3.839 11 C 0.145 3.855 12 H 0.084 0.916 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.128 4.128 16 C 0.090 3.910 17 N -0.603 5.603 18 C 0.523 3.477 19 O -0.494 6.494 20 C -0.170 4.170 21 C 0.188 3.812 22 N -0.472 5.472 23 C 0.248 3.752 24 N -0.451 5.451 25 C 0.131 3.869 26 C 0.091 3.909 27 N -0.440 5.440 28 C 0.007 3.993 29 C 0.014 3.986 30 H 0.252 0.748 31 H 0.357 0.643 32 H 0.025 0.975 33 H 0.029 0.971 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.203 0.797 43 H 0.239 0.761 44 H 0.234 0.766 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.896 -2.087 12.173 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C -0.263 4.263 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.231 1.231 6 H -0.193 1.193 7 C -0.325 4.325 8 H 0.067 0.933 9 N -0.367 5.367 10 C 0.035 3.965 11 C 0.042 3.958 12 H 0.102 0.898 13 C -0.159 4.159 14 C -0.149 4.149 15 C -0.166 4.166 16 C -0.031 4.031 17 N -0.339 5.339 18 C 0.308 3.692 19 O -0.367 6.367 20 C -0.177 4.177 21 C 0.012 3.988 22 N -0.181 5.181 23 C 0.009 3.991 24 N -0.166 5.166 25 C -0.049 4.049 26 C -0.087 4.087 27 N -0.155 5.155 28 C -0.117 4.117 29 C -0.014 4.014 30 H 0.061 0.939 31 H 0.190 0.810 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.219 0.781 43 H 0.255 0.745 44 H 0.250 0.750 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 25.729 -1.769 11.804 28.363 hybrid contribution -1.269 0.388 0.221 1.345 sum 24.461 -1.381 12.025 27.292 Atomic orbital electron populations 1.69884 1.06904 1.25916 1.61953 1.25302 0.95965 1.00547 1.04436 0.85453 0.78092 0.80491 0.77999 1.19724 1.23128 1.19280 1.18959 0.83064 0.92846 1.37645 0.93318 1.42543 1.02049 1.03485 1.88658 1.20981 0.89561 0.88219 0.97716 1.21556 0.92762 0.95879 0.85557 0.89795 1.21872 0.96404 0.94729 1.02914 1.21502 0.93674 1.02424 0.97342 1.21978 1.01181 0.95594 0.97890 1.22480 0.77851 0.99635 1.03155 1.47926 1.07629 1.61450 1.16870 1.18297 0.86033 0.81516 0.83305 1.91244 1.17218 1.52522 1.75695 1.21277 1.00395 1.01246 0.94788 1.23774 0.89080 0.87320 0.98617 1.67524 1.27621 1.25094 0.97898 1.20270 0.92897 0.92980 0.92905 1.68410 1.25646 1.22855 0.99724 1.25318 0.91109 0.93931 0.94584 1.25208 0.92535 0.90401 1.00520 1.68662 1.24029 1.24160 0.98642 1.20139 0.98562 0.98898 0.94084 1.21731 0.94549 0.95502 0.89580 0.93888 0.81010 0.95710 0.95371 0.92350 0.89479 0.89897 0.90359 0.92552 0.88036 0.88357 0.89584 0.78069 0.74498 0.75009 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.49 13.97 21.65 0.30 -68.19 16 2 C -0.07 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.95 50.29 27.74 68.60 1.90 52.20 16 4 H -0.27 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -16.44 7.11 99.48 0.71 -15.73 16 6 H -0.27 -13.25 6.52 99.48 0.65 -12.60 16 7 C -0.19 -12.01 10.19 84.03 0.86 -11.15 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 9 N -0.72 -36.62 3.05 -343.47 -1.05 -37.67 16 10 C 0.16 6.57 4.87 86.38 0.42 6.99 16 11 C 0.15 4.08 2.92 44.98 0.13 4.22 16 12 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 13 C -0.12 -2.43 5.36 30.67 0.16 -2.27 16 14 C -0.11 -1.49 5.88 30.62 0.18 -1.31 16 15 C -0.13 -1.69 6.10 30.82 0.19 -1.50 16 16 C 0.09 1.52 4.84 86.51 0.42 1.94 16 17 N -0.60 -16.17 2.97 -797.57 -2.37 -18.53 16 18 C 0.52 18.31 6.74 86.79 0.59 18.90 16 19 O -0.49 -22.92 10.72 -3.87 -0.04 -22.96 16 20 C -0.17 -5.24 5.21 -20.00 -0.10 -5.35 16 21 C 0.19 4.95 8.52 85.42 0.73 5.68 16 22 N -0.47 -13.70 10.39 -192.75 -2.00 -15.70 16 23 C 0.25 7.16 7.60 134.96 1.03 8.19 16 24 N -0.45 -10.76 10.55 -193.10 -2.04 -12.79 16 25 C 0.13 1.68 11.21 85.14 0.95 2.64 16 26 C 0.09 1.23 11.22 85.14 0.96 2.19 16 27 N -0.44 -10.83 10.46 -187.99 -1.97 -12.79 16 28 C 0.01 0.22 6.59 40.34 0.27 0.48 16 29 C 0.01 0.45 9.73 23.05 0.22 0.67 16 30 H 0.25 16.63 8.31 -92.70 -0.77 15.86 16 31 H 0.36 17.56 4.95 -92.71 -0.46 17.10 16 32 H 0.03 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.03 1.30 6.29 -2.39 -0.02 1.29 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 1.22 8.07 -2.39 -0.02 1.20 16 41 H 0.09 1.44 4.63 -2.39 -0.01 1.43 16 42 H 0.20 4.01 6.30 -2.91 -0.02 3.99 16 43 H 0.24 0.24 8.06 -2.91 -0.02 0.22 16 44 H 0.23 0.57 8.06 -2.91 -0.02 0.55 16 45 H 0.15 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -92.83 358.94 0.73 -92.11 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.52 Total: 18.22 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 7.46 Total: 26.12 kcal Atomic # 7 Polarization: -156.56 SS G_CDS: -9.11 Total: -165.68 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.04 Total: -22.96 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.90 Total: 52.20 kcal Total: -92.83 0.73 -92.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700344454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.091 kcal (2) G-P(sol) polarization free energy of solvation -92.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds