Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47290 * 176.31346 * 3 2 1 5 5 C 1.46900 * 111.00422 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47160 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47017 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47075 * 179.97438 * 7 6 5 9 9 C 1.42902 * 113.99828 * 180.02562 * 8 7 6 10 10 C 1.53070 * 109.44395 * 89.79670 * 9 8 7 11 11 C 1.53195 * 109.29524 * 181.23525 * 10 9 8 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34783 * 120.63144 * 233.55709 * 12 11 10 14 14 O 1.21274 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.46922 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99932 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46968 * 60.00376 * 21 19 17 23 23 H 1.48501 * 109.46947 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47386 * 300.00446 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.45918 * 210.00158 * 9 8 7 27 27 H 1.08999 * 109.47006 * 56.31544 * 3 2 1 28 28 H 1.09007 * 109.47516 * 296.31697 * 3 2 1 29 29 H 1.00906 * 111.00277 * 303.95759 * 4 3 2 30 30 H 1.09000 * 109.47083 * 59.99753 * 5 4 3 31 31 H 1.09006 * 109.47152 * 300.00166 * 5 4 3 32 32 H 1.08995 * 109.47238 * 60.00192 * 6 5 4 33 33 H 1.08999 * 109.46823 * 299.99664 * 6 5 4 34 34 H 1.09000 * 109.47112 * 59.99619 * 7 6 5 35 35 H 1.09006 * 109.47266 * 299.99943 * 7 6 5 36 36 H 1.09007 * 109.45850 * 329.96828 * 9 8 7 37 37 H 1.08997 * 109.38860 * 61.35712 * 10 9 8 38 38 H 1.09003 * 109.62046 * 301.25055 * 10 9 8 39 39 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 40 40 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 41 41 H 1.09001 * 109.47385 * 300.00399 * 15 13 12 42 42 H 1.08997 * 109.47457 * 60.00250 * 15 13 12 43 43 H 0.96997 * 119.99912 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 45 45 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 46 46 H 1.09002 * 109.49876 * 58.67502 * 26 9 8 47 47 H 1.09005 * 109.52615 * 298.59752 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0970 1.3830 -0.0891 5 6 4.5655 1.4228 -0.0922 6 6 5.0361 2.8756 -0.1851 7 6 6.5655 2.9171 -0.1877 8 8 7.0051 4.2740 -0.2751 9 6 8.4261 4.4250 -0.2854 10 6 8.9327 4.3812 -1.7292 11 6 10.4590 4.5125 -1.7342 12 7 10.8346 5.7264 -0.9966 13 6 11.6302 6.6554 -1.5628 14 8 12.0428 6.4937 -2.6916 15 6 12.0060 7.8955 -0.7934 16 16 13.0733 8.9398 -1.8164 17 6 13.3516 10.2766 -0.7027 18 1 12.9026 10.2637 0.2794 19 6 14.1479 11.3463 -1.0877 20 7 14.6948 11.3623 -2.2849 21 14 14.4424 12.7639 0.0927 22 1 15.0969 12.2544 1.3245 23 1 15.3200 13.7723 -0.5540 24 1 13.1439 13.3920 0.4457 25 6 10.3260 5.9086 0.3697 26 6 8.8009 5.7653 0.3513 27 1 2.9715 -0.5691 -0.8551 28 1 2.9716 -0.4548 0.9212 29 1 2.7213 1.8479 -0.9020 30 1 4.9423 0.8629 -0.9481 31 1 4.9430 0.9771 0.8282 32 1 4.6594 3.4351 0.6711 33 1 4.6586 3.3216 -1.1053 34 1 6.9427 2.3574 -1.0437 35 1 6.9427 2.4711 0.7326 36 1 8.8817 3.6134 0.2820 37 1 8.4948 5.2058 -2.2915 38 1 8.6474 3.4348 -2.1886 39 1 10.8163 4.5839 -2.7616 40 1 10.9023 3.6407 -1.2531 41 1 11.1035 8.4470 -0.5297 42 1 12.5372 7.6124 0.1152 43 1 15.2510 12.1100 -2.5541 44 1 10.7564 5.1504 1.0240 45 1 10.5976 6.9003 0.7315 46 1 8.4197 5.8025 1.3718 47 1 8.3660 6.5788 -0.2294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700505478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = -58.733426 kcal Electronic energy + Delta-G solvation = -25808.055796 eV Core-core repulsion = 21924.040531 eV Total energy + Delta-G solvation = -3884.015266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12333 -38.73351 -38.02470 -36.67601 -36.07455 -33.09112 -32.43235 -31.93162 -31.28543 -28.92615 -27.88722 -25.52909 -24.95409 -23.95975 -23.37903 -22.11589 -21.11039 -19.14204 -18.50222 -17.74702 -17.24518 -16.91399 -16.56860 -16.01248 -15.88268 -15.62768 -15.34229 -14.81853 -14.79775 -14.72718 -14.46101 -14.03912 -13.90197 -13.64130 -13.29398 -13.20723 -13.05845 -12.87048 -12.67708 -12.54113 -12.44856 -12.25372 -12.10877 -11.87005 -11.69508 -11.45197 -11.39514 -11.07118 -11.04065 -11.03878 -10.80026 -10.76558 -9.84354 -9.77288 -9.36836 -9.35578 -9.06265 -8.60279 -8.23745 -6.50845 -6.21816 -3.92726 2.00774 2.20144 2.89314 2.96672 3.10052 3.23345 3.25382 3.28937 3.35781 3.57770 3.73060 4.19913 4.37036 4.41300 4.45584 4.51736 4.58491 4.63167 4.72204 4.79958 4.82830 4.89741 4.97198 4.99037 5.07399 5.09415 5.13310 5.28369 5.28981 5.45339 5.55346 5.56285 5.61667 5.64072 5.66098 5.85058 5.88970 5.90304 6.03795 6.05098 6.10133 6.44592 6.59605 6.91874 6.96140 7.51022 7.58953 8.34566 8.53004 9.23360 10.85573 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028760 B = 0.001442 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.349903 B =19417.359994 C =19966.130464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.207 3.793 3 C 0.154 3.846 4 N -0.687 5.687 5 C 0.063 3.937 6 C -0.119 4.119 7 C 0.064 3.936 8 O -0.380 6.380 9 C 0.094 3.906 10 C -0.155 4.155 11 C 0.116 3.884 12 N -0.622 5.622 13 C 0.536 3.464 14 O -0.516 6.516 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.075 3.925 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.111 3.889 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.352 0.648 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.157 -23.632 7.170 30.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.112 4.112 3 C 0.023 3.977 4 N -0.320 5.320 5 C -0.066 4.066 6 C -0.157 4.157 7 C -0.013 4.013 8 O -0.299 6.299 9 C 0.037 3.963 10 C -0.193 4.193 11 C -0.008 4.008 12 N -0.359 5.359 13 C 0.324 3.676 14 O -0.390 6.390 15 C -0.302 4.302 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.012 4.012 26 C -0.170 4.170 27 H 0.097 0.903 28 H 0.137 0.863 29 H 0.170 0.830 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.278 -23.506 6.015 30.990 hybrid contribution 0.425 0.536 1.239 1.416 sum -18.853 -22.970 7.254 30.589 Atomic orbital electron populations 1.81265 1.13030 1.07023 1.08609 1.28992 0.95050 0.93847 0.93349 1.19371 0.81710 0.91945 1.04704 1.60344 1.09046 1.13924 1.48660 1.21887 0.85882 0.97001 1.01787 1.21448 0.93940 0.96004 1.04319 1.22404 0.94696 0.84172 1.00069 1.87928 1.21715 1.25461 1.94805 1.22082 0.80761 0.97926 0.95572 1.22439 0.96194 1.03182 0.97528 1.21446 0.93428 0.86729 0.99150 1.48143 1.50885 1.21266 1.15600 1.20346 0.77101 0.83505 0.86629 1.90688 1.52631 1.77190 1.18525 1.23563 1.05112 0.97544 1.03987 1.85408 1.59420 1.18208 1.20386 1.22818 1.36481 1.06550 1.02571 0.90974 1.24982 0.94809 0.97964 0.95726 1.70007 1.30663 1.31449 1.18182 0.86235 0.78364 0.80671 0.80296 1.19926 1.20808 1.19922 1.21695 0.92618 1.03522 0.83383 1.22005 0.95821 0.97159 1.02059 0.90258 0.86331 0.82973 0.94089 0.89943 0.89882 0.90928 0.93397 0.93179 0.92049 0.90456 0.90847 0.88523 0.91876 0.89178 0.89223 0.92122 0.91340 0.88530 0.89968 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -3.87 18.54 42.15 0.78 -3.09 16 2 C 0.21 1.13 15.69 -20.76 -0.33 0.80 16 3 C 0.15 0.21 6.16 -6.62 -0.04 0.17 16 4 N -0.69 -1.92 6.47 -116.89 -0.76 -2.68 16 5 C 0.06 0.14 5.68 -3.82 -0.02 0.11 16 6 C -0.12 -0.52 5.84 -26.73 -0.16 -0.68 16 7 C 0.06 0.35 5.74 37.16 0.21 0.56 16 8 O -0.38 -3.31 9.99 -35.23 -0.35 -3.66 16 9 C 0.09 0.79 2.57 -26.67 -0.07 0.72 16 10 C -0.15 -1.44 5.70 -26.59 -0.15 -1.59 16 11 C 0.12 1.30 6.43 -3.71 -0.02 1.28 16 12 N -0.62 -8.46 2.97 -172.77 -0.51 -8.97 16 13 C 0.54 10.00 7.72 -10.98 -0.08 9.91 16 14 O -0.52 -11.63 15.27 5.56 0.08 -11.55 16 15 C -0.15 -3.02 4.50 36.00 0.16 -2.86 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 21 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 26 C -0.13 -1.19 5.73 -26.61 -0.15 -1.35 16 27 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 28 H 0.12 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.35 0.91 8.71 -39.29 -0.34 0.57 16 30 H 0.04 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.22 7.84 -51.93 -0.41 -0.18 16 35 H 0.05 0.22 8.09 -51.93 -0.42 -0.20 16 36 H 0.06 0.43 7.79 -51.93 -0.40 0.02 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 39 H 0.10 1.29 7.00 -51.93 -0.36 0.92 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.66 7.69 -51.91 -0.40 1.26 16 42 H 0.09 1.64 7.94 -51.92 -0.41 1.23 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.10 1.01 5.93 -51.92 -0.31 0.70 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -36.76 405.53 -9.28 -46.05 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -7.66 Total: -4.64 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -0.48 Total: -4.60 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.24 Total: -40.03 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.27 Total: -15.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.76 -9.28 -46.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700505478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.688 kcal (2) G-P(sol) polarization free energy of solvation -36.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds