Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47290 * 176.31346 * 3 2 1 5 5 C 1.46900 * 111.00422 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47160 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47017 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47075 * 179.97438 * 7 6 5 9 9 C 1.42902 * 113.99828 * 180.02562 * 8 7 6 10 10 C 1.53070 * 109.44395 * 89.79670 * 9 8 7 11 11 C 1.53195 * 109.29524 * 181.23525 * 10 9 8 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34783 * 120.63144 * 233.55709 * 12 11 10 14 14 O 1.21274 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.46922 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99932 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46968 * 60.00376 * 21 19 17 23 23 H 1.48501 * 109.46947 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47386 * 300.00446 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.45918 * 210.00158 * 9 8 7 27 27 H 1.08999 * 109.47006 * 56.31544 * 3 2 1 28 28 H 1.09007 * 109.47516 * 296.31697 * 3 2 1 29 29 H 1.00906 * 111.00277 * 303.95759 * 4 3 2 30 30 H 1.09000 * 109.47083 * 59.99753 * 5 4 3 31 31 H 1.09006 * 109.47152 * 300.00166 * 5 4 3 32 32 H 1.08995 * 109.47238 * 60.00192 * 6 5 4 33 33 H 1.08999 * 109.46823 * 299.99664 * 6 5 4 34 34 H 1.09000 * 109.47112 * 59.99619 * 7 6 5 35 35 H 1.09006 * 109.47266 * 299.99943 * 7 6 5 36 36 H 1.09007 * 109.45850 * 329.96828 * 9 8 7 37 37 H 1.08997 * 109.38860 * 61.35712 * 10 9 8 38 38 H 1.09003 * 109.62046 * 301.25055 * 10 9 8 39 39 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 40 40 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 41 41 H 1.09001 * 109.47385 * 300.00399 * 15 13 12 42 42 H 1.08997 * 109.47457 * 60.00250 * 15 13 12 43 43 H 0.96997 * 119.99912 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 45 45 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 46 46 H 1.09002 * 109.49876 * 58.67502 * 26 9 8 47 47 H 1.09005 * 109.52615 * 298.59752 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0970 1.3830 -0.0891 5 6 4.5655 1.4228 -0.0922 6 6 5.0361 2.8756 -0.1851 7 6 6.5655 2.9171 -0.1877 8 8 7.0051 4.2740 -0.2751 9 6 8.4261 4.4250 -0.2854 10 6 8.9327 4.3812 -1.7292 11 6 10.4590 4.5125 -1.7342 12 7 10.8346 5.7264 -0.9966 13 6 11.6302 6.6554 -1.5628 14 8 12.0428 6.4937 -2.6916 15 6 12.0060 7.8955 -0.7934 16 16 13.0733 8.9398 -1.8164 17 6 13.3516 10.2766 -0.7027 18 1 12.9026 10.2637 0.2794 19 6 14.1479 11.3463 -1.0877 20 7 14.6948 11.3623 -2.2849 21 14 14.4424 12.7639 0.0927 22 1 15.0969 12.2544 1.3245 23 1 15.3200 13.7723 -0.5540 24 1 13.1439 13.3920 0.4457 25 6 10.3260 5.9086 0.3697 26 6 8.8009 5.7653 0.3513 27 1 2.9715 -0.5691 -0.8551 28 1 2.9716 -0.4548 0.9212 29 1 2.7213 1.8479 -0.9020 30 1 4.9423 0.8629 -0.9481 31 1 4.9430 0.9771 0.8282 32 1 4.6594 3.4351 0.6711 33 1 4.6586 3.3216 -1.1053 34 1 6.9427 2.3574 -1.0437 35 1 6.9427 2.4711 0.7326 36 1 8.8817 3.6134 0.2820 37 1 8.4948 5.2058 -2.2915 38 1 8.6474 3.4348 -2.1886 39 1 10.8163 4.5839 -2.7616 40 1 10.9023 3.6407 -1.2531 41 1 11.1035 8.4470 -0.5297 42 1 12.5372 7.6124 0.1152 43 1 15.2510 12.1100 -2.5541 44 1 10.7564 5.1504 1.0240 45 1 10.5976 6.9003 0.7315 46 1 8.4197 5.8025 1.3718 47 1 8.3660 6.5788 -0.2294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700505478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = -85.372702 kcal Electronic energy + Delta-G solvation = -25809.210962 eV Core-core repulsion = 21924.040531 eV Total energy + Delta-G solvation = -3885.170431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21880 -39.54034 -38.40795 -37.50174 -36.64862 -34.57346 -33.74822 -32.76825 -32.03985 -30.31997 -28.19094 -27.66201 -25.71550 -24.50261 -24.11918 -22.44423 -21.99817 -20.37817 -19.51869 -18.79490 -18.29253 -17.51589 -17.12255 -16.93480 -16.85741 -16.66259 -16.30992 -16.22839 -15.85800 -15.32462 -15.24394 -14.91147 -14.83786 -14.58765 -14.45801 -14.11057 -13.97640 -13.67385 -13.48653 -13.38695 -13.18551 -13.14663 -12.97043 -12.85826 -12.83815 -12.60953 -12.36675 -12.24327 -12.15903 -11.90992 -11.72454 -11.57628 -11.48098 -11.11596 -10.88824 -10.34592 -10.24649 -9.72810 -9.47185 -8.66384 -8.33234 -6.11805 1.26666 1.45164 1.46981 1.56224 1.57315 1.63557 1.81252 2.10873 2.28854 2.62563 3.01001 3.02629 3.26218 3.50922 3.63678 3.77858 3.90364 4.06242 4.11489 4.14889 4.24309 4.26920 4.31622 4.38939 4.44472 4.48887 4.50760 4.56698 4.61688 4.66734 4.70728 4.74433 4.83428 4.86096 4.91245 5.00916 5.14760 5.24983 5.30133 5.35916 5.42732 5.57891 5.90011 6.20722 6.27469 6.28264 6.41358 6.59384 7.07928 7.14283 8.75829 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028760 B = 0.001442 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.349903 B =19417.359994 C =19966.130464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.236 3.764 3 C 0.157 3.843 4 N -0.704 5.704 5 C 0.071 3.929 6 C -0.116 4.116 7 C 0.058 3.942 8 O -0.401 6.401 9 C 0.098 3.902 10 C -0.146 4.146 11 C 0.112 3.888 12 N -0.609 5.609 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.125 4.125 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.015 3.985 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.262 1.262 25 C 0.105 3.895 26 C -0.128 4.128 27 H 0.110 0.890 28 H 0.143 0.857 29 H 0.350 0.650 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.498 -25.374 9.959 32.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.082 4.082 3 C 0.026 3.974 4 N -0.337 5.337 5 C -0.058 4.058 6 C -0.154 4.154 7 C -0.018 4.018 8 O -0.321 6.321 9 C 0.040 3.960 10 C -0.185 4.185 11 C -0.010 4.010 12 N -0.344 5.344 13 C 0.320 3.680 14 O -0.446 6.446 15 C -0.276 4.276 16 S 0.074 5.926 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.185 1.185 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.017 4.017 26 C -0.167 4.167 27 H 0.128 0.872 28 H 0.160 0.840 29 H 0.168 0.832 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.121 0.879 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.661 -25.291 8.849 33.234 hybrid contribution 0.452 0.944 0.396 1.119 sum -19.210 -24.348 9.244 32.361 Atomic orbital electron populations 1.81287 1.15463 1.09486 1.11345 1.29784 0.95771 0.91570 0.91028 1.19702 0.78816 0.91752 1.07153 1.60324 1.09619 1.14810 1.48932 1.21834 0.85331 0.95471 1.03124 1.21407 0.93539 0.97450 1.02981 1.22619 0.95065 0.82802 1.01360 1.87916 1.21650 1.27673 1.94878 1.22035 0.81085 0.98196 0.94675 1.22367 0.94254 1.03301 0.98569 1.21649 0.95048 0.86436 0.97875 1.48169 1.48791 1.20532 1.16891 1.20136 0.77906 0.83965 0.85946 1.90669 1.55142 1.78271 1.20521 1.23383 1.04070 0.97049 1.03069 1.85595 1.62140 1.20684 1.24219 1.23167 1.36641 1.06759 1.02831 0.89828 1.26116 0.94243 1.01062 0.97577 1.70180 1.31606 1.32544 1.20516 0.85019 0.78674 0.76555 0.77846 1.18488 1.20465 1.18702 1.22011 0.93575 1.04571 0.81558 1.21960 0.94636 0.97060 1.03010 0.87232 0.83987 0.83177 0.92459 0.88710 0.91525 0.92084 0.92255 0.91552 0.89391 0.93205 0.88517 0.91184 0.88708 0.87634 0.87139 0.92008 0.88016 0.88910 0.87884 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -9.25 18.54 20.00 0.37 -8.88 16 2 C 0.24 2.32 15.69 89.44 1.40 3.72 16 3 C 0.16 -0.03 6.16 84.50 0.52 0.49 16 4 N -0.70 -2.25 6.47 -523.72 -3.39 -5.64 16 5 C 0.07 0.07 5.68 86.30 0.49 0.57 16 6 C -0.12 -0.77 5.84 30.59 0.18 -0.59 16 7 C 0.06 0.44 5.74 71.98 0.41 0.85 16 8 O -0.40 -5.98 9.99 -148.98 -1.49 -7.47 16 9 C 0.10 1.32 2.57 30.63 0.08 1.40 16 10 C -0.15 -2.43 5.70 30.68 0.17 -2.25 16 11 C 0.11 2.35 6.43 86.36 0.56 2.90 16 12 N -0.61 -15.71 2.97 -818.91 -2.44 -18.14 16 13 C 0.53 20.00 7.72 87.66 0.68 20.67 16 14 O -0.57 -26.61 15.27 -3.01 -0.05 -26.66 16 15 C -0.12 -4.96 4.50 71.24 0.32 -4.64 16 16 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 17 C -0.55 -31.05 9.50 67.95 0.65 -30.41 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.84 5.49 84.86 0.47 1.30 16 20 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 21 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 25 C 0.10 1.82 6.34 86.36 0.55 2.37 16 26 C -0.13 -1.99 5.73 30.67 0.18 -1.81 16 27 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.14 -0.62 8.14 -2.38 -0.02 -0.64 16 29 H 0.35 1.27 8.71 -89.69 -0.78 0.49 16 30 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.09 -0.10 8.14 -2.38 -0.02 -0.12 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.32 7.84 -2.39 -0.02 0.31 16 35 H 0.07 0.30 8.09 -2.38 -0.02 0.28 16 36 H 0.09 0.77 7.79 -2.38 -0.02 0.75 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.16 7.84 -2.39 -0.02 1.14 16 39 H 0.07 1.88 7.00 -2.39 -0.02 1.86 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 3.84 7.69 -2.39 -0.02 3.82 16 42 H 0.11 3.90 7.94 -2.40 -0.02 3.88 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 1.70 5.93 -2.38 -0.01 1.69 16 46 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -85.62 405.53 1.00 -84.62 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.19 Total: 7.79 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 6.65 Total: -5.42 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -5.17 Total: -88.41 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.53 Total: -34.13 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -85.62 1.00 -84.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700505478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.757 kcal (2) G-P(sol) polarization free energy of solvation -85.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds