Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99735 * 2 1 4 4 H 1.48501 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47270 * 300.00200 * 3 2 1 6 6 H 1.48507 * 109.46807 * 59.99913 * 3 2 1 7 7 C 1.38793 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00353 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00069 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47523 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99539 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00354 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99912 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.90371 * 31.14058 * 14 13 11 16 16 C 1.55422 * 111.10625 * 267.17442 * 14 13 11 17 17 C 1.54321 * 103.04810 * 206.29847 * 16 14 13 18 18 N 1.47448 * 107.23159 * 22.28093 * 17 16 14 19 19 C 1.46900 * 111.00041 * 123.26094 * 18 17 16 20 20 C 1.52995 * 109.47016 * 69.15688 * 19 18 17 21 21 N 1.46502 * 109.46766 * 180.02562 * 20 19 18 22 22 C 1.34778 * 119.99855 * 180.02562 * 21 20 19 23 23 O 1.21287 * 119.99910 * 359.97438 * 22 21 20 24 24 C 1.50706 * 120.00094 * 179.97438 * 22 21 20 25 25 C 1.52994 * 117.50259 * 248.74605 * 24 22 21 26 26 C 1.52996 * 117.49534 * 180.08557 * 24 22 21 27 27 C 1.47846 * 108.56553 * 0.99350 * 18 17 16 28 28 H 0.96996 * 120.00717 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47135 * 59.99854 * 10 9 7 30 30 H 1.09008 * 109.47140 * 300.00422 * 10 9 7 31 31 H 0.96994 * 119.99874 * 359.97438 * 13 11 10 32 32 H 1.09004 * 110.69757 * 87.90721 * 16 14 13 33 33 H 1.09005 * 110.84788 * 324.75602 * 16 14 13 34 34 H 1.08999 * 109.88748 * 262.87827 * 17 16 14 35 35 H 1.09000 * 109.89149 * 141.68777 * 17 16 14 36 36 H 1.09001 * 109.47310 * 189.16067 * 19 18 17 37 37 H 1.09001 * 109.46761 * 309.15792 * 19 18 17 38 38 H 1.08999 * 109.47200 * 299.99832 * 20 19 18 39 39 H 1.09001 * 109.47271 * 60.00417 * 20 19 18 40 40 H 0.96992 * 120.00193 * 359.97438 * 21 20 19 41 41 H 1.09001 * 115.54664 * 34.42230 * 24 22 21 42 42 H 1.09001 * 117.49464 * 0.02562 * 25 24 22 43 43 H 1.08997 * 117.50130 * 145.01835 * 25 24 22 44 44 H 1.09008 * 117.49618 * 214.98218 * 26 24 22 45 45 H 1.08997 * 117.50309 * 359.97438 * 26 24 22 46 46 H 1.09002 * 110.37464 * 94.73346 * 27 18 17 47 47 H 1.08999 * 110.37318 * 216.96123 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9877 -5.3027 -0.0012 12 8 0.7914 -5.5023 -0.0011 13 7 2.8446 -6.3430 -0.0018 14 6 2.3309 -7.7150 -0.0019 15 1 1.3781 -7.7735 -0.5280 16 6 2.2023 -8.2645 1.4463 17 6 2.3329 -9.7900 1.2530 18 7 3.0353 -10.0098 -0.0247 19 6 4.2476 -10.8155 0.1728 20 6 3.8540 -12.2464 0.5446 21 7 5.0631 -13.0498 0.7421 22 6 4.9602 -14.3510 1.0777 23 8 3.8666 -14.8568 1.2166 24 6 6.2039 -15.1776 1.2804 25 6 6.4994 -16.2728 0.2538 26 6 6.0205 -16.6488 1.6582 27 6 3.3636 -8.6941 -0.6138 28 1 -0.4851 0.8399 -0.0004 29 1 3.1246 -3.7312 0.8894 30 1 3.1247 -3.7311 -0.8905 31 1 3.8013 -6.1833 -0.0022 32 1 1.2301 -8.0116 1.8694 33 1 3.0061 -7.8859 2.0777 34 1 1.3432 -10.2451 1.2151 35 1 2.9099 -10.2195 2.0719 36 1 4.8305 -10.8266 -0.7482 37 1 4.8447 -10.3827 0.9754 38 1 3.2712 -12.2353 1.4656 39 1 3.2569 -12.6793 -0.2581 40 1 5.9376 -12.6454 0.6307 41 1 7.0543 -14.6494 1.7117 42 1 5.7944 -16.3953 -0.5684 43 1 7.5441 -16.4655 0.0099 44 1 6.7506 -17.0886 2.3378 45 1 5.0004 -17.0187 1.7607 46 1 4.3762 -8.3977 -0.3399 47 1 3.2590 -8.7271 -1.6983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713816563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = -43.662699 kcal Electronic energy + Delta-G solvation = -25762.540364 eV Core-core repulsion = 21879.178614 eV Total energy + Delta-G solvation = -3883.361750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45577 -39.93448 -38.56282 -36.81954 -35.58529 -34.16757 -32.45285 -31.73507 -29.61474 -29.15514 -27.31594 -25.50244 -24.85776 -23.03596 -22.89308 -21.50610 -21.17905 -20.59569 -20.12751 -17.98789 -17.89496 -16.84672 -16.77882 -16.33835 -16.17772 -15.67770 -15.27078 -15.02738 -14.89235 -14.82634 -14.34484 -14.12925 -13.88430 -13.72012 -13.68959 -13.17057 -13.04032 -12.72931 -12.52350 -12.32306 -12.08866 -12.01569 -11.72719 -11.60590 -11.54644 -11.17047 -11.09091 -11.05882 -11.04612 -10.93649 -10.77792 -10.32111 -9.83181 -9.55080 -9.47476 -9.10335 -8.98553 -8.77528 -8.26001 -6.52642 -6.24040 -3.94827 2.03890 2.50244 2.95083 3.01897 3.19728 3.24899 3.29374 3.32619 3.53200 3.83083 4.15192 4.17881 4.25101 4.26689 4.31057 4.33970 4.55237 4.56903 4.66841 4.86487 4.92024 4.95439 5.06099 5.09140 5.10793 5.11437 5.20780 5.27202 5.39910 5.41934 5.52195 5.56941 5.59303 5.59916 5.71662 5.83497 5.89785 5.91160 6.01773 6.09641 6.40626 6.56628 6.61802 6.99170 7.57373 7.62944 7.76422 8.32958 8.55199 9.21460 10.83463 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.042843 B = 0.001385 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.387890 B =20211.428587 C =20565.355600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.731 5.731 14 C 0.140 3.860 15 H 0.108 0.892 16 C -0.155 4.155 17 C 0.040 3.960 18 N -0.521 5.521 19 C 0.041 3.959 20 C 0.122 3.878 21 N -0.727 5.727 22 C 0.542 3.458 23 O -0.537 6.537 24 C -0.197 4.197 25 C -0.152 4.152 26 C -0.148 4.148 27 C 0.039 3.961 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.401 0.599 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.052 0.948 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.342 -29.212 1.509 34.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.385 5.385 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.195 4.195 17 C -0.088 4.088 18 N -0.246 5.246 19 C -0.088 4.088 20 C -0.002 4.002 21 N -0.379 5.379 22 C 0.329 3.671 23 O -0.414 6.414 24 C -0.218 4.218 25 C -0.190 4.190 26 C -0.185 4.185 27 C -0.089 4.089 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.235 0.765 41 H 0.142 0.858 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.071 0.929 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.027 -30.060 1.264 33.196 hybrid contribution 3.518 2.145 0.584 4.162 sum 17.545 -27.915 1.848 33.023 Atomic orbital electron populations 1.70020 1.05958 1.27392 1.46874 1.24987 0.95014 0.99028 0.94505 0.86121 0.79568 0.81895 0.77929 1.19631 1.20536 1.20559 1.22906 0.94930 0.91644 1.58938 0.90887 1.85422 1.04815 0.96331 1.96714 1.23535 1.06651 0.95314 1.04928 1.20338 0.86549 0.86246 0.74841 1.90711 1.15321 1.85502 1.47169 1.45902 1.09823 1.04925 1.77858 1.21998 0.98487 0.80727 0.95477 0.87420 1.23255 1.03691 0.94788 0.97775 1.22908 1.00149 0.95739 0.89992 1.63448 1.21771 1.15050 1.24332 1.22401 0.92181 0.93000 1.01213 1.21299 0.86846 0.89677 1.02383 1.45833 1.10030 1.10472 1.71588 1.19668 0.89872 0.81659 0.75929 1.90728 1.28505 1.71560 1.50602 1.22198 0.98692 0.92386 1.08543 1.22963 1.02923 0.99644 0.93450 1.22978 1.03987 0.93646 0.97889 1.23235 0.97528 0.87512 1.00644 0.92199 0.89246 0.89174 0.76860 0.89757 0.91137 0.89677 0.92298 0.89993 0.93875 0.91227 0.90309 0.76518 0.85826 0.88167 0.87677 0.87819 0.87322 0.92921 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.59 7.85 -10.99 -0.09 9.50 16 12 O -0.51 -11.37 15.50 5.55 0.09 -11.28 16 13 N -0.73 -9.11 5.20 -51.59 -0.27 -9.38 16 14 C 0.14 1.56 3.43 -65.64 -0.23 1.34 16 15 H 0.11 1.48 7.54 -51.93 -0.39 1.09 16 16 C -0.16 -1.59 6.65 -24.75 -0.16 -1.75 16 17 C 0.04 0.34 6.20 -2.83 -0.02 0.32 16 18 N -0.52 -4.25 5.16 -231.24 -1.19 -5.44 16 19 C 0.04 0.25 4.65 -3.83 -0.02 0.23 16 20 C 0.12 0.88 5.69 -4.04 -0.02 0.85 16 21 N -0.73 -4.35 5.56 -60.29 -0.33 -4.68 16 22 C 0.54 4.50 7.61 -10.98 -0.08 4.41 16 23 O -0.54 -6.80 16.26 5.55 0.09 -6.71 16 24 C -0.20 -1.03 6.19 -91.77 -0.57 -1.60 16 25 C -0.15 -0.67 10.24 -26.70 -0.27 -0.94 16 26 C -0.15 -0.77 10.05 -26.70 -0.27 -1.04 16 27 C 0.04 0.32 6.33 -2.30 -0.01 0.31 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 31 H 0.40 3.74 8.57 -40.82 -0.35 3.39 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.45 6.88 -51.93 -0.36 0.09 16 36 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.04 0.23 7.98 -51.93 -0.41 -0.18 16 38 H 0.07 0.59 7.09 -51.93 -0.37 0.22 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 1.22 8.47 -40.82 -0.35 0.87 16 41 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.11 0.76 7.67 -51.93 -0.40 0.36 16 46 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -36.45 404.02 -10.99 -47.44 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.64 Total: 0.83 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.32 Total: -3.97 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -1.06 Total: -44.78 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.18 Total: -18.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.45 -10.99 -47.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.779 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds