Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99735 * 2 1 4 4 H 1.48501 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47270 * 300.00200 * 3 2 1 6 6 H 1.48507 * 109.46807 * 59.99913 * 3 2 1 7 7 C 1.38793 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00353 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00069 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47523 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99539 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00354 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99912 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.90371 * 31.14058 * 14 13 11 16 16 C 1.55422 * 111.10625 * 267.17442 * 14 13 11 17 17 C 1.54321 * 103.04810 * 206.29847 * 16 14 13 18 18 N 1.47448 * 107.23159 * 22.28093 * 17 16 14 19 19 C 1.46900 * 111.00041 * 123.26094 * 18 17 16 20 20 C 1.52995 * 109.47016 * 69.15688 * 19 18 17 21 21 N 1.46502 * 109.46766 * 180.02562 * 20 19 18 22 22 C 1.34778 * 119.99855 * 180.02562 * 21 20 19 23 23 O 1.21287 * 119.99910 * 359.97438 * 22 21 20 24 24 C 1.50706 * 120.00094 * 179.97438 * 22 21 20 25 25 C 1.52994 * 117.50259 * 248.74605 * 24 22 21 26 26 C 1.52996 * 117.49534 * 180.08557 * 24 22 21 27 27 C 1.47846 * 108.56553 * 0.99350 * 18 17 16 28 28 H 0.96996 * 120.00717 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47135 * 59.99854 * 10 9 7 30 30 H 1.09008 * 109.47140 * 300.00422 * 10 9 7 31 31 H 0.96994 * 119.99874 * 359.97438 * 13 11 10 32 32 H 1.09004 * 110.69757 * 87.90721 * 16 14 13 33 33 H 1.09005 * 110.84788 * 324.75602 * 16 14 13 34 34 H 1.08999 * 109.88748 * 262.87827 * 17 16 14 35 35 H 1.09000 * 109.89149 * 141.68777 * 17 16 14 36 36 H 1.09001 * 109.47310 * 189.16067 * 19 18 17 37 37 H 1.09001 * 109.46761 * 309.15792 * 19 18 17 38 38 H 1.08999 * 109.47200 * 299.99832 * 20 19 18 39 39 H 1.09001 * 109.47271 * 60.00417 * 20 19 18 40 40 H 0.96992 * 120.00193 * 359.97438 * 21 20 19 41 41 H 1.09001 * 115.54664 * 34.42230 * 24 22 21 42 42 H 1.09001 * 117.49464 * 0.02562 * 25 24 22 43 43 H 1.08997 * 117.50130 * 145.01835 * 25 24 22 44 44 H 1.09008 * 117.49618 * 214.98218 * 26 24 22 45 45 H 1.08997 * 117.50309 * 359.97438 * 26 24 22 46 46 H 1.09002 * 110.37464 * 94.73346 * 27 18 17 47 47 H 1.08999 * 110.37318 * 216.96123 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9877 -5.3027 -0.0012 12 8 0.7914 -5.5023 -0.0011 13 7 2.8446 -6.3430 -0.0018 14 6 2.3309 -7.7150 -0.0019 15 1 1.3781 -7.7735 -0.5280 16 6 2.2023 -8.2645 1.4463 17 6 2.3329 -9.7900 1.2530 18 7 3.0353 -10.0098 -0.0247 19 6 4.2476 -10.8155 0.1728 20 6 3.8540 -12.2464 0.5446 21 7 5.0631 -13.0498 0.7421 22 6 4.9602 -14.3510 1.0777 23 8 3.8666 -14.8568 1.2166 24 6 6.2039 -15.1776 1.2804 25 6 6.4994 -16.2728 0.2538 26 6 6.0205 -16.6488 1.6582 27 6 3.3636 -8.6941 -0.6138 28 1 -0.4851 0.8399 -0.0004 29 1 3.1246 -3.7312 0.8894 30 1 3.1247 -3.7311 -0.8905 31 1 3.8013 -6.1833 -0.0022 32 1 1.2301 -8.0116 1.8694 33 1 3.0061 -7.8859 2.0777 34 1 1.3432 -10.2451 1.2151 35 1 2.9099 -10.2195 2.0719 36 1 4.8305 -10.8266 -0.7482 37 1 4.8447 -10.3827 0.9754 38 1 3.2712 -12.2353 1.4656 39 1 3.2569 -12.6793 -0.2581 40 1 5.9376 -12.6454 0.6307 41 1 7.0543 -14.6494 1.7117 42 1 5.7944 -16.3953 -0.5684 43 1 7.5441 -16.4655 0.0099 44 1 6.7506 -17.0886 2.3378 45 1 5.0004 -17.0187 1.7607 46 1 4.3762 -8.3977 -0.3399 47 1 3.2590 -8.7271 -1.6983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713816563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = -72.360830 kcal Electronic energy + Delta-G solvation = -25763.784808 eV Core-core repulsion = 21879.178614 eV Total energy + Delta-G solvation = -3884.606194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17020 -40.89210 -39.64064 -37.29067 -36.35587 -35.20803 -34.58359 -32.65587 -30.84524 -29.93488 -28.27078 -27.60472 -25.40669 -23.58662 -23.29638 -22.47733 -22.05746 -21.46261 -20.89781 -19.85332 -18.50665 -18.04785 -17.57235 -17.25257 -16.98119 -16.88042 -16.42766 -16.31362 -16.09658 -15.79785 -15.50744 -14.97654 -14.74686 -14.63216 -14.54911 -14.42468 -14.26477 -13.74612 -13.54335 -13.27490 -13.15898 -12.92935 -12.87863 -12.62668 -12.49741 -12.45313 -12.38871 -12.23153 -11.76666 -11.69457 -11.54539 -11.44912 -11.15918 -11.00572 -10.96666 -10.26606 -10.18908 -10.11487 -9.40509 -8.66689 -8.34728 -6.12807 1.26421 1.41588 1.44889 1.46839 1.57655 1.58882 1.95200 2.24108 2.28208 2.91986 2.99828 3.05343 3.33033 3.51970 3.58862 3.74268 3.87764 3.94370 3.96741 3.97920 4.00637 4.11233 4.23034 4.26708 4.28347 4.31965 4.46495 4.51045 4.55192 4.75226 4.79578 4.84698 4.87822 4.91668 4.97817 5.03683 5.04096 5.14158 5.22440 5.35897 5.42253 5.44151 5.82440 5.97974 6.20100 6.48813 6.51107 7.06921 7.21576 7.23783 8.74777 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.042843 B = 0.001385 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.387890 B =20211.428587 C =20565.355600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.702 5.702 14 C 0.133 3.867 15 H 0.077 0.923 16 C -0.151 4.151 17 C 0.047 3.953 18 N -0.534 5.534 19 C 0.049 3.951 20 C 0.126 3.874 21 N -0.711 5.711 22 C 0.534 3.466 23 O -0.592 6.592 24 C -0.196 4.196 25 C -0.142 4.142 26 C -0.159 4.159 27 C 0.052 3.948 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.418 0.582 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.419 0.581 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.971 -29.376 1.493 36.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.356 5.356 14 C 0.027 3.973 15 H 0.095 0.905 16 C -0.191 4.191 17 C -0.081 4.081 18 N -0.259 5.259 19 C -0.079 4.079 20 C 0.002 3.998 21 N -0.364 5.364 22 C 0.322 3.678 23 O -0.472 6.472 24 C -0.217 4.217 25 C -0.179 4.179 26 C -0.196 4.196 27 C -0.076 4.076 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.256 0.744 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.256 0.744 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.752 -30.241 1.239 35.605 hybrid contribution 2.097 2.046 0.583 2.987 sum 20.849 -28.195 1.822 35.113 Atomic orbital electron populations 1.70187 1.08025 1.28548 1.48121 1.26119 0.95922 1.03320 0.93738 0.84911 0.78682 0.76355 0.78025 1.17884 1.19992 1.20034 1.23242 0.95375 0.91949 1.58722 0.89795 1.85631 1.10654 0.99343 1.97054 1.23369 1.03522 0.94158 1.06947 1.20092 0.86235 0.86695 0.74761 1.90705 1.17543 1.86033 1.49928 1.45569 1.10228 1.04318 1.75497 1.22069 0.98484 0.80356 0.96400 0.90493 1.23184 1.02829 0.96071 0.96971 1.22804 1.00166 0.94248 0.90853 1.63404 1.23210 1.15245 1.24079 1.22382 0.91396 0.91415 1.02747 1.21145 0.87107 0.90694 1.00868 1.45699 1.10596 1.09779 1.70282 1.20313 0.90206 0.82311 0.75010 1.90706 1.30733 1.72694 1.53104 1.22291 0.98005 0.92116 1.09279 1.23042 1.04022 0.98421 0.92437 1.23019 1.03246 0.94007 0.99351 1.23142 0.97583 0.86330 1.00544 0.92016 0.87092 0.86976 0.74438 0.92170 0.89902 0.90838 0.90829 0.88184 0.92037 0.92786 0.92447 0.74374 0.82679 0.89631 0.84920 0.85607 0.90030 0.90136 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.73 9.50 67.95 0.65 -30.08 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 10 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 11 C 0.54 18.99 7.85 87.66 0.69 19.68 16 12 O -0.56 -25.82 15.50 -3.04 -0.05 -25.87 16 13 N -0.70 -16.12 5.20 -435.53 -2.27 -18.38 16 14 C 0.13 2.84 3.43 46.48 0.16 3.00 16 15 H 0.08 2.18 7.54 -2.39 -0.02 2.16 16 16 C -0.15 -2.95 6.65 31.88 0.21 -2.74 16 17 C 0.05 0.75 6.20 86.65 0.54 1.29 16 18 N -0.53 -7.61 5.16 -885.52 -4.57 -12.18 16 19 C 0.05 0.43 4.65 86.30 0.40 0.84 16 20 C 0.13 1.67 5.69 86.38 0.49 2.17 16 21 N -0.71 -7.19 5.56 -463.05 -2.57 -9.77 16 22 C 0.53 8.49 7.61 87.66 0.67 9.15 16 23 O -0.59 -15.62 16.26 -3.05 -0.05 -15.67 16 24 C -0.20 -1.66 6.19 -11.54 -0.07 -1.73 16 25 C -0.14 -0.98 10.24 30.62 0.31 -0.66 16 26 C -0.16 -1.50 10.05 30.62 0.31 -1.20 16 27 C 0.05 0.71 6.33 86.77 0.55 1.26 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 30 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.42 6.30 8.57 -92.71 -0.79 5.51 16 32 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 0.97 6.88 -2.39 -0.02 0.95 16 36 H 0.10 0.59 8.08 -2.39 -0.02 0.57 16 37 H 0.06 0.38 7.98 -2.39 -0.02 0.36 16 38 H 0.05 0.90 7.09 -2.39 -0.02 0.88 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.42 1.16 8.47 -92.71 -0.79 0.37 16 41 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 45 H 0.08 1.23 7.67 -2.39 -0.02 1.21 16 46 H 0.08 0.69 7.67 -2.39 -0.02 0.67 16 47 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -84.78 404.02 -3.14 -87.92 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.59 Total: 16.27 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.81 Total: -2.26 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -9.13 Total: -95.90 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.10 Total: -41.54 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -84.78 -3.14 -87.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.559 kcal (2) G-P(sol) polarization free energy of solvation -84.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds