Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99658 * 2 1 4 4 H 1.48499 * 109.47073 * 269.99363 * 3 2 1 5 5 H 1.48503 * 109.47513 * 29.99614 * 3 2 1 6 6 H 1.48501 * 109.47011 * 149.99986 * 3 2 1 7 7 C 1.38796 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00378 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99774 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00087 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47476 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99490 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00419 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00257 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.64655 * 323.30379 * 14 13 11 16 16 C 1.54595 * 110.72256 * 86.45473 * 14 13 11 17 17 C 1.53994 * 105.13716 * 140.49752 * 16 14 13 18 18 N 1.47896 * 107.06063 * 1.21980 * 17 16 14 19 19 C 1.46896 * 111.00259 * 214.15768 * 18 17 16 20 20 C 1.52998 * 109.47416 * 175.71058 * 19 18 17 21 21 N 1.46500 * 109.47675 * 174.85583 * 20 19 18 22 22 C 1.34766 * 120.00543 * 180.02562 * 21 20 19 23 23 O 1.21283 * 119.99925 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.00538 * 179.97438 * 22 21 20 25 25 C 1.53002 * 117.49766 * 111.25117 * 24 22 21 26 26 C 1.53000 * 117.50250 * 179.91273 * 24 22 21 27 27 C 1.48531 * 105.81925 * 334.67401 * 18 17 16 28 28 H 0.96999 * 120.00573 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47061 * 60.00045 * 10 9 7 30 30 H 1.09004 * 109.47211 * 300.00589 * 10 9 7 31 31 H 0.97001 * 119.99996 * 0.02562 * 13 11 10 32 32 H 1.08993 * 110.31167 * 21.57744 * 16 14 13 33 33 H 1.08998 * 110.30805 * 259.40937 * 16 14 13 34 34 H 1.09001 * 109.91568 * 241.86684 * 17 16 14 35 35 H 1.08996 * 110.08670 * 120.67085 * 17 16 14 36 36 H 1.09003 * 109.46950 * 55.71068 * 19 18 17 37 37 H 1.09005 * 109.47234 * 295.71018 * 19 18 17 38 38 H 1.09003 * 109.47205 * 54.85309 * 20 19 18 39 39 H 1.09007 * 109.47083 * 294.85554 * 20 19 18 40 40 H 0.97006 * 119.99563 * 359.97438 * 21 20 19 41 41 H 1.09004 * 115.54772 * 325.58799 * 24 22 21 42 42 H 1.09004 * 117.49525 * 215.00384 * 25 24 22 43 43 H 1.08996 * 117.50104 * 0.02562 * 25 24 22 44 44 H 1.08994 * 117.49724 * 359.97438 * 26 24 22 45 45 H 1.08997 * 117.49965 * 144.97917 * 26 24 22 46 46 H 1.09007 * 110.66698 * 157.63819 * 27 18 17 47 47 H 1.08995 * 110.66960 * 280.76785 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3440 -2.2960 0.0035 13 7 6.0458 -4.4945 0.0016 14 6 7.4909 -4.7355 0.0033 15 1 8.0053 -3.9915 -0.6049 16 6 8.0432 -4.7386 1.4472 17 6 9.0861 -5.8713 1.4763 18 7 9.1371 -6.4492 0.1159 19 6 9.3963 -7.8943 0.1672 20 6 9.3359 -8.4738 -1.2475 21 7 9.7144 -9.8886 -1.2124 22 6 9.7335 -10.6096 -2.3508 23 8 9.4368 -10.0873 -3.4044 24 6 10.1234 -12.0648 -2.3147 25 6 9.0306 -13.0964 -2.6022 26 6 10.1237 -12.8293 -3.6401 27 6 7.8124 -6.1673 -0.4937 28 1 -0.4851 0.8400 -0.0004 29 1 3.6442 -3.4312 -0.8893 30 1 3.6434 -3.4317 0.8906 31 1 5.4293 -5.2433 0.0001 32 1 7.2427 -4.9430 2.1581 33 1 8.5162 -3.7830 1.6733 34 1 8.7848 -6.6351 2.1932 35 1 10.0638 -5.4731 1.7475 36 1 8.6429 -8.3766 0.7899 37 1 10.3851 -8.0713 0.5904 38 1 10.0250 -7.9292 -1.8930 39 1 8.3219 -8.3785 -1.6362 40 1 9.9520 -10.3063 -0.3697 41 1 10.8848 -12.3294 -1.5809 42 1 9.0731 -14.0396 -2.0576 43 1 8.0298 -12.7225 -2.8179 44 1 9.8414 -12.2797 -4.5380 45 1 10.8854 -13.5965 -3.7784 46 1 7.8765 -6.1915 -1.5816 47 1 7.0654 -6.8757 -0.1355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713816564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = -42.371583 kcal Electronic energy + Delta-G solvation = -26026.101858 eV Core-core repulsion = 22142.796096 eV Total energy + Delta-G solvation = -3883.305763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47771 -39.99022 -38.61966 -36.82324 -35.61010 -34.24878 -32.44598 -31.89434 -29.84078 -28.61617 -27.80233 -25.61970 -24.85238 -23.00762 -22.87802 -21.62760 -21.19577 -20.59427 -20.14842 -17.98549 -17.92225 -16.96044 -16.77045 -16.43772 -16.03543 -15.82285 -15.39490 -15.00442 -14.97215 -14.66444 -14.54427 -14.42938 -14.08830 -13.71706 -13.26923 -13.22011 -13.05787 -12.80833 -12.73317 -12.49732 -12.08581 -11.90587 -11.77944 -11.76295 -11.57992 -11.27012 -11.16553 -11.05676 -11.01216 -10.91140 -10.61111 -10.32415 -9.86505 -9.57339 -9.56112 -9.05841 -8.99304 -8.94624 -8.51105 -6.92651 -6.29485 -4.01440 2.03688 2.50551 2.72636 2.93000 3.20725 3.32770 3.33385 3.50155 3.55037 3.78611 4.13318 4.19835 4.23044 4.29365 4.32804 4.34151 4.49314 4.60089 4.63387 4.73142 4.81065 4.88566 4.92080 5.06811 5.07445 5.09669 5.19678 5.20866 5.33211 5.36644 5.40813 5.46820 5.54742 5.60923 5.61871 5.73966 5.87198 5.89205 5.94670 5.99561 6.27731 6.48052 6.57100 6.97732 7.56095 7.75869 7.93455 8.40825 8.45818 9.16672 10.79716 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.001639 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.646338 B =17079.705917 C =17982.445962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.731 5.731 14 C 0.146 3.854 15 H 0.103 0.897 16 C -0.144 4.144 17 C 0.040 3.960 18 N -0.509 5.509 19 C 0.038 3.962 20 C 0.119 3.881 21 N -0.727 5.727 22 C 0.542 3.458 23 O -0.536 6.536 24 C -0.197 4.197 25 C -0.153 4.153 26 C -0.147 4.147 27 C 0.026 3.974 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.187 -27.501 1.538 35.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.385 5.385 14 C 0.040 3.960 15 H 0.121 0.879 16 C -0.183 4.183 17 C -0.088 4.088 18 N -0.234 5.234 19 C -0.091 4.091 20 C -0.005 4.005 21 N -0.379 5.379 22 C 0.329 3.671 23 O -0.412 6.412 24 C -0.218 4.218 25 C -0.190 4.190 26 C -0.185 4.185 27 C -0.103 4.103 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.142 0.858 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.112 0.888 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 23.509 -25.189 0.474 34.459 hybrid contribution -1.607 -1.305 1.070 2.330 sum 21.903 -26.494 1.544 34.410 Atomic orbital electron populations 1.69937 1.05919 1.27776 1.48040 1.24709 0.94449 0.98965 0.93150 0.86733 0.81872 0.83265 0.79962 1.19184 1.19933 1.15937 1.22319 0.88282 0.97542 1.58842 0.89402 1.84796 1.09269 0.99957 1.97426 1.23282 0.93943 1.04481 1.05815 1.20289 0.90584 0.82244 0.74997 1.90706 1.58732 1.42107 1.47407 1.45949 1.06744 1.08179 1.77640 1.21715 0.81463 0.96561 0.96255 0.87860 1.22857 0.98436 0.99423 0.97621 1.22870 1.00385 0.96483 0.89065 1.64690 1.29280 1.11309 1.18080 1.22431 1.02134 0.88504 0.96019 1.21353 1.01677 0.80374 0.97122 1.45818 1.70502 1.11394 1.10201 1.19673 0.76774 0.87270 0.83430 1.90735 1.48121 1.72129 1.30262 1.22197 1.04982 0.90731 1.03913 1.22972 0.94800 0.98537 1.02721 1.22981 1.01243 1.01366 0.92877 1.23518 0.90046 0.95619 1.01080 0.91936 0.88450 0.88498 0.76702 0.90760 0.89947 0.93441 0.89747 0.93827 0.89721 0.90167 0.91244 0.76502 0.85806 0.87665 0.88166 0.87296 0.87793 0.88825 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.80 27.74 -169.99 -4.72 17.08 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 11 C 0.53 9.20 7.84 -10.99 -0.09 9.11 16 12 O -0.52 -10.89 15.59 5.55 0.09 -10.81 16 13 N -0.73 -8.88 5.15 -52.01 -0.27 -9.15 16 14 C 0.15 1.60 3.34 -66.07 -0.22 1.38 16 15 H 0.10 1.37 7.69 -51.93 -0.40 0.98 16 16 C -0.14 -1.43 6.67 -25.37 -0.17 -1.60 16 17 C 0.04 0.30 6.70 -2.76 -0.02 0.28 16 18 N -0.51 -3.98 5.35 -230.46 -1.23 -5.22 16 19 C 0.04 0.22 4.95 -3.83 -0.02 0.20 16 20 C 0.12 0.83 5.35 -4.04 -0.02 0.81 16 21 N -0.73 -4.28 5.56 -60.29 -0.33 -4.62 16 22 C 0.54 4.53 7.61 -10.99 -0.08 4.45 16 23 O -0.54 -6.89 16.26 5.55 0.09 -6.80 16 24 C -0.20 -1.04 6.19 -91.77 -0.57 -1.61 16 25 C -0.15 -0.70 10.24 -26.69 -0.27 -0.97 16 26 C -0.15 -0.79 10.05 -26.69 -0.27 -1.06 16 27 C 0.03 0.21 4.97 -1.90 -0.01 0.21 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 30 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 31 H 0.40 3.72 8.54 -40.82 -0.35 3.37 16 32 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.22 7.97 -51.93 -0.41 -0.19 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.57 7.18 -51.93 -0.37 0.20 16 40 H 0.40 1.14 8.47 -40.82 -0.35 0.79 16 41 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.11 0.79 7.67 -51.93 -0.40 0.39 16 45 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.81 7.77 -51.92 -0.40 0.41 16 47 H 0.05 0.38 7.90 -51.93 -0.41 -0.03 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -36.38 401.38 -10.56 -46.94 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.71 Total: 0.78 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.30 Total: -2.95 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.06 Total: -44.75 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.18 Total: -17.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.38 -10.56 -46.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.570 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds