Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99658 * 2 1 4 4 H 1.48499 * 109.47073 * 269.99363 * 3 2 1 5 5 H 1.48503 * 109.47513 * 29.99614 * 3 2 1 6 6 H 1.48501 * 109.47011 * 149.99986 * 3 2 1 7 7 C 1.38796 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00378 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99774 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00087 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47476 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99490 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00419 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00257 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.64655 * 323.30379 * 14 13 11 16 16 C 1.54595 * 110.72256 * 86.45473 * 14 13 11 17 17 C 1.53994 * 105.13716 * 140.49752 * 16 14 13 18 18 N 1.47896 * 107.06063 * 1.21980 * 17 16 14 19 19 C 1.46896 * 111.00259 * 214.15768 * 18 17 16 20 20 C 1.52998 * 109.47416 * 175.71058 * 19 18 17 21 21 N 1.46500 * 109.47675 * 174.85583 * 20 19 18 22 22 C 1.34766 * 120.00543 * 180.02562 * 21 20 19 23 23 O 1.21283 * 119.99925 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.00538 * 179.97438 * 22 21 20 25 25 C 1.53002 * 117.49766 * 111.25117 * 24 22 21 26 26 C 1.53000 * 117.50250 * 179.91273 * 24 22 21 27 27 C 1.48531 * 105.81925 * 334.67401 * 18 17 16 28 28 H 0.96999 * 120.00573 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47061 * 60.00045 * 10 9 7 30 30 H 1.09004 * 109.47211 * 300.00589 * 10 9 7 31 31 H 0.97001 * 119.99996 * 0.02562 * 13 11 10 32 32 H 1.08993 * 110.31167 * 21.57744 * 16 14 13 33 33 H 1.08998 * 110.30805 * 259.40937 * 16 14 13 34 34 H 1.09001 * 109.91568 * 241.86684 * 17 16 14 35 35 H 1.08996 * 110.08670 * 120.67085 * 17 16 14 36 36 H 1.09003 * 109.46950 * 55.71068 * 19 18 17 37 37 H 1.09005 * 109.47234 * 295.71018 * 19 18 17 38 38 H 1.09003 * 109.47205 * 54.85309 * 20 19 18 39 39 H 1.09007 * 109.47083 * 294.85554 * 20 19 18 40 40 H 0.97006 * 119.99563 * 359.97438 * 21 20 19 41 41 H 1.09004 * 115.54772 * 325.58799 * 24 22 21 42 42 H 1.09004 * 117.49525 * 215.00384 * 25 24 22 43 43 H 1.08996 * 117.50104 * 0.02562 * 25 24 22 44 44 H 1.08994 * 117.49724 * 359.97438 * 26 24 22 45 45 H 1.08997 * 117.49965 * 144.97917 * 26 24 22 46 46 H 1.09007 * 110.66698 * 157.63819 * 27 18 17 47 47 H 1.08995 * 110.66960 * 280.76785 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3440 -2.2960 0.0035 13 7 6.0458 -4.4945 0.0016 14 6 7.4909 -4.7355 0.0033 15 1 8.0053 -3.9915 -0.6049 16 6 8.0432 -4.7386 1.4472 17 6 9.0861 -5.8713 1.4763 18 7 9.1371 -6.4492 0.1159 19 6 9.3963 -7.8943 0.1672 20 6 9.3359 -8.4738 -1.2475 21 7 9.7144 -9.8886 -1.2124 22 6 9.7335 -10.6096 -2.3508 23 8 9.4368 -10.0873 -3.4044 24 6 10.1234 -12.0648 -2.3147 25 6 9.0306 -13.0964 -2.6022 26 6 10.1237 -12.8293 -3.6401 27 6 7.8124 -6.1673 -0.4937 28 1 -0.4851 0.8400 -0.0004 29 1 3.6442 -3.4312 -0.8893 30 1 3.6434 -3.4317 0.8906 31 1 5.4293 -5.2433 0.0001 32 1 7.2427 -4.9430 2.1581 33 1 8.5162 -3.7830 1.6733 34 1 8.7848 -6.6351 2.1932 35 1 10.0638 -5.4731 1.7475 36 1 8.6429 -8.3766 0.7899 37 1 10.3851 -8.0713 0.5904 38 1 10.0250 -7.9292 -1.8930 39 1 8.3219 -8.3785 -1.6362 40 1 9.9520 -10.3063 -0.3697 41 1 10.8848 -12.3294 -1.5809 42 1 9.0731 -14.0396 -2.0576 43 1 8.0298 -12.7225 -2.8179 44 1 9.8414 -12.2797 -4.5380 45 1 10.8854 -13.5965 -3.7784 46 1 7.8765 -6.1915 -1.5816 47 1 7.0654 -6.8757 -0.1355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713816564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = -71.240409 kcal Electronic energy + Delta-G solvation = -26027.353705 eV Core-core repulsion = 22142.796096 eV Total energy + Delta-G solvation = -3884.557609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.20579 -40.91414 -39.64063 -37.29711 -36.36849 -35.25509 -34.67825 -32.76161 -31.04866 -29.34875 -28.71364 -27.83945 -25.39062 -23.59357 -23.30652 -22.53746 -21.95121 -21.43505 -20.96837 -19.90390 -18.51320 -18.04188 -17.72796 -17.40251 -17.09923 -16.71457 -16.56555 -16.27353 -16.07171 -15.83006 -15.28910 -15.20278 -15.05049 -14.85743 -14.72916 -14.45375 -13.92150 -13.84829 -13.56780 -13.42768 -13.34179 -13.03891 -12.81944 -12.71502 -12.54836 -12.44699 -12.37102 -12.20478 -11.86955 -11.70102 -11.55175 -11.45457 -11.17875 -11.03940 -10.98985 -10.54445 -10.19648 -10.15986 -9.51038 -9.00426 -8.52257 -6.23164 0.97652 1.31091 1.44172 1.45872 1.53433 1.54469 1.97597 2.16856 2.24813 2.69540 2.86115 2.91422 3.08193 3.45334 3.59080 3.74134 3.86131 3.87596 3.92046 3.97042 4.02636 4.09508 4.22088 4.22980 4.23445 4.32373 4.45043 4.45688 4.58551 4.74617 4.76068 4.81974 4.87840 4.92603 4.96191 5.02917 5.03505 5.13797 5.21849 5.35474 5.38666 5.69908 5.75437 5.93035 6.10587 6.43337 6.50160 6.93010 7.17059 7.20978 8.60085 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.001639 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.646338 B =17079.705917 C =17982.445962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.176 6.176 10 C -0.111 4.111 11 C 0.538 3.462 12 O -0.559 6.559 13 N -0.705 5.705 14 C 0.141 3.859 15 H 0.076 0.924 16 C -0.142 4.142 17 C 0.048 3.952 18 N -0.523 5.523 19 C 0.047 3.953 20 C 0.122 3.878 21 N -0.711 5.711 22 C 0.533 3.467 23 O -0.592 6.592 24 C -0.195 4.195 25 C -0.143 4.143 26 C -0.159 4.159 27 C 0.037 3.963 28 H 0.277 0.723 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.417 0.583 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.419 0.581 41 H 0.157 0.843 42 H 0.133 0.867 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.126 0.874 46 H 0.087 0.913 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.894 -29.898 3.128 38.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.081 0.919 9 S 0.051 5.949 10 C -0.262 4.262 11 C 0.324 3.676 12 O -0.437 6.437 13 N -0.359 5.359 14 C 0.035 3.965 15 H 0.094 0.906 16 C -0.181 4.181 17 C -0.079 4.079 18 N -0.248 5.248 19 C -0.082 4.082 20 C -0.002 4.002 21 N -0.363 5.363 22 C 0.321 3.679 23 O -0.472 6.472 24 C -0.216 4.216 25 C -0.180 4.180 26 C -0.197 4.197 27 C -0.092 4.092 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.257 0.743 41 H 0.175 0.825 42 H 0.151 0.849 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.145 0.855 46 H 0.106 0.894 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 25.222 -27.658 2.112 37.491 hybrid contribution -2.105 -0.721 0.557 2.294 sum 23.118 -28.379 2.670 36.700 Atomic orbital electron populations 1.70012 1.07290 1.29024 1.49110 1.25550 0.95258 1.02219 0.92862 0.85873 0.80689 0.79653 0.80186 1.18799 1.18259 1.16078 1.22467 0.90268 0.96709 1.58315 0.91934 1.84728 1.06409 1.06184 1.97590 1.23270 0.95803 0.99650 1.07510 1.19949 0.89368 0.83334 0.74999 1.90698 1.59286 1.43778 1.49950 1.45684 1.07934 1.06930 1.75363 1.21796 0.79949 0.97644 0.97095 0.90572 1.22797 0.99105 0.99716 0.96476 1.22816 0.99811 0.96017 0.89300 1.64672 1.28784 1.12956 1.18371 1.22410 1.03681 0.87039 0.95027 1.21214 1.00277 0.80884 0.97822 1.45688 1.69251 1.10838 1.10536 1.20314 0.75876 0.88622 0.83056 1.90712 1.50739 1.73456 1.32323 1.22299 1.06116 0.88635 1.04558 1.23046 0.93674 0.99190 1.02113 1.23021 1.02607 1.01934 0.92111 1.23398 0.91037 0.93925 1.00822 0.91365 0.86893 0.86668 0.74606 0.90464 0.91800 0.91293 0.89270 0.92012 0.87987 0.92402 0.92602 0.74325 0.82546 0.84894 0.89720 0.90099 0.85543 0.89448 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.85 13.97 21.65 0.30 -55.55 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.16 27.74 68.60 1.90 47.06 16 4 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 7 C -0.53 -30.88 10.04 67.95 0.68 -30.19 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 9 S -0.18 -8.87 18.55 -56.49 -1.05 -9.92 16 10 C -0.11 -4.13 6.16 71.23 0.44 -3.69 16 11 C 0.54 18.13 7.84 87.66 0.69 18.82 16 12 O -0.56 -23.74 15.59 -3.04 -0.05 -23.79 16 13 N -0.71 -16.04 5.15 -436.85 -2.25 -18.28 16 14 C 0.14 2.94 3.34 46.20 0.15 3.10 16 15 H 0.08 2.06 7.69 -2.39 -0.02 2.04 16 16 C -0.14 -2.59 6.67 31.47 0.21 -2.38 16 17 C 0.05 0.60 6.70 86.45 0.58 1.18 16 18 N -0.52 -6.97 5.35 -883.05 -4.73 -11.70 16 19 C 0.05 0.38 4.95 86.30 0.43 0.81 16 20 C 0.12 1.56 5.35 86.38 0.46 2.02 16 21 N -0.71 -7.03 5.56 -463.07 -2.57 -9.60 16 22 C 0.53 8.52 7.61 87.66 0.67 9.19 16 23 O -0.59 -15.79 16.26 -3.04 -0.05 -15.84 16 24 C -0.20 -1.67 6.19 -11.54 -0.07 -1.75 16 25 C -0.14 -1.04 10.24 30.62 0.31 -0.72 16 26 C -0.16 -1.57 10.05 30.62 0.31 -1.26 16 27 C 0.04 0.54 4.97 86.65 0.43 0.97 16 28 H 0.28 15.61 8.31 -92.71 -0.77 14.83 16 29 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 30 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.42 6.67 8.54 -92.71 -0.79 5.88 16 32 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 0.60 7.67 -2.39 -0.02 0.58 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 0.34 7.97 -2.39 -0.02 0.32 16 37 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.88 7.18 -2.38 -0.02 0.86 16 40 H 0.42 1.01 8.47 -92.70 -0.79 0.23 16 41 H 0.16 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.13 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.26 7.67 -2.39 -0.02 1.25 16 45 H 0.13 0.62 8.14 -2.39 -0.02 0.61 16 46 H 0.09 1.44 7.77 -2.38 -0.02 1.42 16 47 H 0.07 0.81 7.90 -2.39 -0.02 0.79 16 Total: -1.00 -82.26 401.38 -3.36 -85.62 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -0.63 Total: 12.70 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.76 Total: -0.70 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -9.24 Total: -95.13 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.10 Total: -39.63 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.92 kcal Total: -82.26 -3.36 -85.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.375 kcal (2) G-P(sol) polarization free energy of solvation -82.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds