Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00431 * 2 1 4 4 H 1.48503 * 109.46660 * 239.99559 * 3 2 1 5 5 H 1.48492 * 109.47185 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47074 * 119.99856 * 3 2 1 7 7 C 1.38819 * 119.99448 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99720 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99823 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47143 * 65.00251 * 11 10 9 13 13 N 1.46492 * 109.47454 * 304.99757 * 11 10 9 14 14 C 1.34780 * 120.00475 * 155.00102 * 13 11 10 15 15 O 1.21514 * 119.99525 * 0.02562 * 14 13 11 16 16 C 1.48156 * 120.00556 * 180.02562 * 14 13 11 17 17 C 1.39947 * 120.89008 * 0.02562 * 16 14 13 18 18 C 1.38043 * 119.13670 * 180.02562 * 17 16 14 19 19 N 1.31858 * 120.97841 * 359.97438 * 18 17 16 20 20 C 1.32224 * 121.97185 * 359.97438 * 19 18 17 21 21 N 1.39851 * 119.61793 * 180.02562 * 20 19 18 22 22 C 1.37166 * 126.49082 * 4.71348 * 21 20 19 23 23 C 1.34623 * 106.83068 * 179.90119 * 22 21 20 24 24 N 1.34154 * 108.21372 * 0.36460 * 23 22 21 25 25 C 1.30486 * 109.37388 * 359.76988 * 24 23 22 26 26 C 1.38903 * 120.75405 * 0.02840 * 20 19 18 27 27 C 1.53011 * 109.46794 * 184.99915 * 11 10 9 28 28 C 1.53000 * 117.49589 * 248.74600 * 27 11 10 29 29 C 1.53001 * 117.49429 * 180.08966 * 27 11 10 30 30 H 0.97006 * 119.99193 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00536 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47171 * 60.00151 * 10 9 7 33 33 H 1.09002 * 109.47217 * 300.00142 * 10 9 7 34 34 H 0.96999 * 120.00313 * 335.00457 * 13 11 10 35 35 H 1.08007 * 120.43192 * 359.95751 * 17 16 14 36 36 H 1.07994 * 119.50770 * 180.02562 * 18 17 16 37 37 H 1.08005 * 126.58678 * 0.03505 * 22 21 20 38 38 H 1.07998 * 125.89509 * 180.11007 * 23 22 21 39 39 H 1.07996 * 125.72104 * 179.97438 * 25 24 23 40 40 H 1.07996 * 120.53075 * 179.97438 * 26 20 19 41 41 H 1.08995 * 115.55236 * 34.41677 * 27 11 10 42 42 H 1.09000 * 117.50056 * 0.02562 * 28 27 11 43 43 H 1.09000 * 117.49962 * 145.02389 * 28 27 11 44 44 H 1.09004 * 117.49398 * 214.97904 * 29 27 11 45 45 H 1.09001 * 117.50111 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6961 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0578 -3.6569 0.0027 11 6 1.0634 -4.8197 0.0031 12 1 0.4976 -4.8142 -0.9285 13 7 0.1435 -4.6753 1.1340 14 6 -1.0810 -5.2360 1.0827 15 8 -1.4218 -5.8618 0.0984 16 6 -2.0115 -5.0895 2.2262 17 6 -1.6386 -4.3724 3.3687 18 6 -2.5340 -4.2592 4.4132 19 7 -3.7281 -4.8145 4.3468 20 6 -4.1235 -5.4999 3.2874 21 7 -5.4013 -6.0680 3.2693 22 6 -6.3726 -5.9219 4.2266 23 6 -7.4389 -6.6311 3.8115 24 7 -7.1307 -7.2035 2.6380 25 6 -5.9135 -6.8743 2.3022 26 6 -3.2842 -5.6622 2.1926 27 6 1.8242 -6.1412 0.1300 28 6 1.8340 -7.0701 -1.0857 29 6 1.0014 -7.4310 0.1471 30 1 -0.4849 0.8402 -0.0004 31 1 0.3554 -2.3881 0.0016 32 1 2.6844 -3.7139 0.8928 33 1 2.6845 -3.7155 -0.8872 34 1 0.4157 -4.1760 1.9199 35 1 -0.6625 -3.9145 3.4328 36 1 -2.2526 -3.7068 5.2975 37 1 -6.2974 -5.3464 5.1375 38 1 -8.3787 -6.7266 4.3351 39 1 -5.3993 -7.1898 1.4065 40 1 -3.6107 -6.2231 1.3294 41 1 2.7227 -6.1091 0.7462 42 1 1.2990 -6.7397 -1.9759 43 1 2.7389 -7.6495 -1.2690 44 1 1.3589 -8.2477 0.7743 45 1 -0.0818 -7.3382 0.0683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716632263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 100.300864 kcal Electronic energy + Delta-G solvation = -28780.124912 eV Core-core repulsion = 24799.854691 eV Total energy + Delta-G solvation = -3980.270221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.43234 -41.76805 -40.57123 -38.45275 -36.63896 -35.57677 -34.97503 -33.95719 -32.92725 -31.30384 -30.34000 -29.73191 -26.38004 -25.65379 -25.23956 -23.41329 -23.07192 -22.97555 -22.04986 -21.59277 -21.35114 -20.08810 -19.16057 -18.29619 -17.79197 -17.10106 -16.99132 -16.78644 -16.65873 -16.58516 -15.90439 -15.81597 -15.29976 -15.14248 -15.01818 -14.95949 -14.90579 -14.71648 -14.45653 -14.36246 -13.73269 -13.21770 -13.16558 -12.76556 -12.73659 -12.49575 -12.33347 -12.12032 -11.91823 -11.84830 -11.54624 -11.28803 -11.20085 -11.14183 -11.06723 -10.95952 -10.81393 -10.06117 -9.95058 -9.56264 -9.00905 -7.93695 -5.22980 -0.65287 -0.39551 1.04052 1.27710 1.50011 1.51792 1.57764 1.76181 1.91448 2.02534 2.56464 2.63433 2.94464 3.14560 3.35629 3.41657 3.45798 3.56780 3.60519 3.74163 3.77171 3.93973 4.11145 4.14125 4.17494 4.28698 4.36845 4.43435 4.44869 4.51237 4.62098 4.63004 4.79525 4.83729 4.90395 5.02573 5.05472 5.10949 5.22897 5.29249 5.33317 5.48889 5.53380 5.62983 5.98380 6.26458 6.41618 6.52810 6.87725 7.04832 7.34877 8.07143 8.30942 9.28595 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.003015 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.097005 B = 9283.438634 C =11251.886765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.149 3.851 11 C 0.179 3.821 12 H 0.063 0.937 13 N -0.689 5.689 14 C 0.559 3.441 15 O -0.557 6.557 16 C -0.065 4.065 17 C -0.137 4.137 18 C 0.138 3.862 19 N -0.494 5.494 20 C 0.328 3.672 21 N -0.415 5.415 22 C -0.033 4.033 23 C -0.040 4.040 24 N -0.508 5.508 25 C 0.188 3.812 26 C -0.129 4.129 27 C -0.164 4.164 28 C -0.165 4.165 29 C -0.183 4.183 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.411 0.589 35 H 0.170 0.830 36 H 0.212 0.788 37 H 0.197 0.803 38 H 0.200 0.800 39 H 0.232 0.768 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -14.525 10.511 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.200 1.200 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.022 3.978 11 C 0.074 3.926 12 H 0.081 0.919 13 N -0.339 5.339 14 C 0.346 3.654 15 O -0.437 6.437 16 C -0.076 4.076 17 C -0.158 4.158 18 C -0.019 4.019 19 N -0.207 5.207 20 C 0.101 3.899 21 N -0.097 5.097 22 C -0.162 4.162 23 C -0.184 4.184 24 N -0.225 5.225 25 C -0.093 4.093 26 C -0.152 4.152 27 C -0.183 4.183 28 C -0.202 4.202 29 C -0.220 4.220 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.249 0.751 35 H 0.187 0.813 36 H 0.228 0.772 37 H 0.214 0.786 38 H 0.217 0.783 39 H 0.248 0.752 40 H 0.175 0.825 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.133 0.867 44 H 0.121 0.879 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.915 -15.233 10.060 18.670 hybrid contribution 1.025 1.818 -0.234 2.100 sum -2.890 -13.415 9.826 16.878 Atomic orbital electron populations 1.69811 1.06532 1.25959 1.59366 1.25490 0.96233 1.00864 1.03709 0.85279 0.77175 0.79484 0.78184 1.20897 1.22728 1.19986 1.19559 0.91576 0.84998 1.41236 0.90270 1.42500 1.05618 1.00858 1.89595 1.21064 0.93294 0.83620 0.99779 1.20643 0.89494 0.93630 0.88821 0.91911 1.45780 1.13840 1.53371 1.20941 1.18193 0.81907 0.78964 0.86339 1.90695 1.76572 1.42552 1.33905 1.20182 0.94123 0.98263 0.95059 1.22736 1.03159 0.97286 0.92621 1.23196 0.85669 0.93750 0.99300 1.66925 1.19663 1.09397 1.24679 1.18063 0.85013 0.95268 0.91544 1.43221 1.09807 1.37197 1.19510 1.23275 0.88826 1.06716 0.97395 1.22870 1.00724 1.00390 0.94415 1.70353 1.12447 1.24561 1.15145 1.25871 0.91698 0.95235 0.96472 1.21627 0.93092 1.01653 0.98840 1.22571 1.01893 0.89795 1.04071 1.22987 1.02702 1.02553 0.91992 1.23207 0.99382 0.97736 1.01669 0.94211 0.79360 0.93640 0.94422 0.75115 0.81301 0.77191 0.78562 0.78348 0.75221 0.82548 0.85784 0.89935 0.86703 0.87859 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.27 13.06 21.65 0.28 -55.98 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.97 43.78 29.55 68.60 2.03 45.81 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.24 -12.42 9.99 84.04 0.84 -11.58 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.74 -33.92 5.43 -343.45 -1.87 -35.79 16 10 C 0.15 5.13 5.80 86.38 0.50 5.63 16 11 C 0.18 5.32 2.43 45.00 0.11 5.43 16 12 H 0.06 2.25 7.34 -2.38 -0.02 2.23 16 13 N -0.69 -18.98 4.46 -445.11 -1.98 -20.96 16 14 C 0.56 16.22 7.13 86.88 0.62 16.84 16 15 O -0.56 -19.04 13.46 -3.76 -0.05 -19.09 16 16 C -0.06 -1.58 5.91 -19.90 -0.12 -1.70 16 17 C -0.14 -2.63 9.61 22.64 0.22 -2.41 16 18 C 0.14 2.40 11.17 84.64 0.95 3.34 16 19 N -0.49 -10.79 9.87 -192.95 -1.90 -12.70 16 20 C 0.33 7.74 7.50 132.77 1.00 8.73 16 21 N -0.41 -9.64 2.98 -355.90 -1.06 -10.70 16 22 C -0.03 -0.69 11.17 83.03 0.93 0.24 16 23 C -0.04 -0.84 11.85 83.51 0.99 0.15 16 24 N -0.51 -12.85 11.24 -199.67 -2.24 -15.09 16 25 C 0.19 4.29 11.89 179.98 2.14 6.43 16 26 C -0.13 -3.08 9.07 22.76 0.21 -2.88 16 27 C -0.16 -3.87 5.36 -10.79 -0.06 -3.93 16 28 C -0.16 -3.68 10.18 30.62 0.31 -3.37 16 29 C -0.18 -4.28 9.74 30.62 0.30 -3.98 16 30 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 31 H 0.37 18.66 7.33 -92.71 -0.68 17.98 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.41 10.14 6.74 -92.71 -0.62 9.51 16 35 H 0.17 2.59 6.53 -2.91 -0.02 2.57 16 36 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.20 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.23 3.92 7.07 -2.91 -0.02 3.90 16 40 H 0.16 3.54 6.46 -2.91 -0.02 3.52 16 41 H 0.12 2.50 8.11 -2.39 -0.02 2.48 16 42 H 0.08 2.06 8.05 -2.39 -0.02 2.04 16 43 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.09 2.69 5.02 -2.39 -0.01 2.68 16 Total: -1.00 -70.12 381.19 2.34 -67.78 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.25 Total: 43.12 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 9.39 Total: 13.61 kcal Atomic # 7 Polarization: -142.45 SS G_CDS: -8.78 Total: -151.23 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -70.12 2.34 -67.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.083 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds