Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37743 * 119.95864 * 2 1 4 4 C 1.39738 * 119.91143 * 180.02562 * 3 2 1 5 5 C 1.47578 * 120.08334 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99913 * 319.63207 * 5 4 3 7 7 N 1.34781 * 120.00045 * 139.64226 * 5 4 3 8 8 C 1.36871 * 120.00062 * 174.78360 * 7 5 4 9 9 H 1.08001 * 119.99996 * 142.52831 * 8 7 5 10 10 C 1.39041 * 119.99878 * 322.52413 * 8 7 5 11 11 N 1.31369 * 120.00321 * 160.45628 * 10 8 7 12 12 Si 1.86804 * 119.99915 * 340.45205 * 10 8 7 13 13 H 1.48497 * 109.46766 * 94.37516 * 12 10 8 14 14 H 1.48502 * 109.47003 * 214.37261 * 12 10 8 15 15 H 1.48498 * 109.47207 * 334.37456 * 12 10 8 16 16 C 1.46499 * 119.99691 * 354.77423 * 7 5 4 17 17 C 1.54272 * 110.03423 * 233.49973 * 16 7 5 18 18 C 1.54961 * 104.16089 * 217.13934 * 17 16 7 19 19 C 1.54891 * 102.77928 * 37.88611 * 18 17 16 20 20 C 1.53877 * 110.03282 * 116.28573 * 16 7 5 21 21 C 1.39774 * 119.82778 * 359.97438 * 4 3 2 22 22 C 1.37712 * 119.91548 * 0.25723 * 21 4 3 23 23 C 1.39017 * 119.94920 * 180.02562 * 2 1 3 24 24 N 1.39958 * 119.92026 * 0.02562 * 23 2 1 25 25 C 1.35129 * 127.39869 * 185.71826 * 24 23 2 26 26 N 1.30717 * 107.26771 * 179.97438 * 25 24 23 27 27 N 1.28416 * 110.65817 * 359.97438 * 26 25 24 28 28 N 1.28949 * 110.21037 * 359.75040 * 27 26 25 29 29 H 1.08998 * 109.47090 * 96.29941 * 1 2 3 30 30 H 1.09001 * 109.47460 * 216.30523 * 1 2 3 31 31 H 1.09007 * 109.46937 * 336.30327 * 1 2 3 32 32 H 1.07998 * 120.04477 * 0.04429 * 3 2 1 33 33 H 0.96992 * 120.00570 * 180.02562 * 11 10 8 34 34 H 1.09006 * 110.02199 * 354.89150 * 16 7 5 35 35 H 1.08999 * 110.48170 * 335.78950 * 17 16 7 36 36 H 1.08995 * 110.48415 * 98.42606 * 17 16 7 37 37 H 1.08997 * 110.72249 * 279.57523 * 18 17 16 38 38 H 1.09000 * 110.92255 * 156.29742 * 18 17 16 39 39 H 1.08996 * 110.48739 * 203.40365 * 19 18 17 40 40 H 1.09005 * 110.59715 * 80.81331 * 19 18 17 41 41 H 1.09001 * 110.03289 * 238.56947 * 20 16 7 42 42 H 1.09005 * 110.02875 * 359.94695 * 20 16 7 43 43 H 1.08003 * 120.04594 * 179.97438 * 21 4 3 44 44 H 1.07995 * 119.95324 * 179.74458 * 22 21 4 45 45 H 1.08008 * 126.36759 * 359.95452 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1934 0.0000 4 6 3.5923 1.1922 -0.0005 5 6 4.3331 2.4686 0.0000 6 8 3.9440 3.3978 -0.6814 7 7 5.4409 2.6045 0.7555 8 6 6.1878 3.7487 0.6755 9 1 6.6414 4.1608 1.5648 10 6 6.3626 4.3804 -0.5507 11 7 6.7306 5.6407 -0.5939 12 14 6.0743 3.4368 -2.1370 13 1 4.6830 3.6655 -2.6030 14 1 7.0274 3.9083 -3.1736 15 1 6.2834 1.9866 -1.8953 16 6 5.8455 1.5275 1.6626 17 6 6.0340 2.0816 3.0900 18 6 7.2505 1.2974 3.6435 19 6 8.1761 1.1834 2.4068 20 6 7.2068 0.9563 1.2285 21 6 4.2865 -0.0209 -0.0005 22 6 3.5917 -1.2099 -0.0054 23 6 2.2011 -1.2045 -0.0005 24 7 1.4985 -2.4150 -0.0016 25 6 2.0103 -3.6611 0.1047 26 7 1.0071 -4.4978 0.0595 27 7 -0.1040 -3.8665 -0.0676 28 7 0.1080 -2.5952 -0.1068 29 1 -0.3633 -0.1128 -1.0214 30 1 -0.3634 -0.8282 0.6085 31 1 -0.3633 0.9411 0.4130 32 1 1.6550 2.1287 0.0007 33 1 6.8522 6.0815 -1.4492 34 1 5.0931 0.7388 1.6645 35 1 6.2505 3.1494 3.0591 36 1 5.1476 1.8885 3.6942 37 1 6.9471 0.3099 3.9911 38 1 7.7407 1.8529 4.4430 39 1 8.8524 0.3353 2.5134 40 1 8.7407 2.1049 2.2642 41 1 7.1152 -0.1098 1.0205 42 1 7.5659 1.4798 0.3423 43 1 5.3665 -0.0259 -0.0014 44 1 4.1274 -2.1475 -0.0095 45 1 3.0544 -3.9180 0.2076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078208713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 141.200057 kcal Electronic energy + Delta-G solvation = -30336.091259 eV Core-core repulsion = 26357.594560 eV Total energy + Delta-G solvation = -3978.496699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.40033 -40.44337 -38.90795 -37.21719 -35.14950 -33.83199 -33.36765 -32.32901 -31.95842 -30.35449 -28.42034 -27.65395 -27.09809 -26.04645 -24.35028 -23.61866 -22.45693 -21.57047 -20.65898 -20.23335 -19.36785 -18.61835 -17.51131 -16.86134 -16.51488 -16.41601 -15.65301 -15.50115 -15.10873 -14.67107 -14.31835 -14.07059 -14.02979 -13.78490 -13.52332 -13.38186 -13.24742 -12.91710 -12.72352 -12.61921 -12.44243 -12.23395 -11.83009 -11.75718 -11.48742 -11.29630 -11.22759 -11.00217 -10.98353 -10.78276 -10.72006 -10.65337 -10.35023 -10.19541 -10.11521 -9.97342 -9.03269 -8.83509 -8.74776 -8.44407 -7.83886 -6.41765 -4.08165 0.08748 1.11647 1.35441 1.57675 2.04847 3.04643 3.30965 3.39786 3.56867 3.81549 3.84886 4.03317 4.16714 4.41794 4.45099 4.62266 4.73336 4.84410 4.91431 4.95285 5.07463 5.12738 5.19172 5.20998 5.31439 5.37316 5.48520 5.62446 5.64043 5.71535 5.79090 5.90093 5.91874 5.94628 5.97739 6.03921 6.12741 6.18968 6.20133 6.29586 6.33081 6.37587 6.55938 6.67681 6.71069 6.74491 7.60405 7.72948 8.18565 8.54039 8.69369 9.18352 9.57470 10.61176 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.003891 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.010694 B = 7193.547840 C = 8296.776565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.065 4.065 4 C -0.073 4.073 5 C 0.454 3.546 6 O -0.541 6.541 7 N -0.431 5.431 8 C -0.332 4.332 9 H 0.104 0.896 10 C 0.090 3.910 11 N -0.849 5.849 12 Si 0.914 3.086 13 H -0.249 1.249 14 H -0.309 1.309 15 H -0.281 1.281 16 C 0.113 3.887 17 C -0.132 4.132 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.117 4.117 23 C 0.107 3.893 24 N -0.310 5.310 25 C 0.218 3.782 26 N -0.332 5.332 27 N -0.048 5.048 28 N -0.076 5.076 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.276 0.724 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.146 0.854 44 H 0.136 0.864 45 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -14.494 4.833 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.066 4.066 3 C -0.084 4.084 4 C -0.078 4.078 5 C 0.246 3.754 6 O -0.426 6.426 7 N -0.149 5.149 8 C -0.457 4.457 9 H 0.121 0.879 10 C -0.121 4.121 11 N -0.483 5.483 12 Si 0.745 3.255 13 H -0.175 1.175 14 H -0.239 1.239 15 H -0.206 1.206 16 C 0.009 3.991 17 C -0.170 4.170 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.173 4.173 21 C -0.115 4.115 22 C -0.138 4.138 23 C 0.014 3.986 24 N -0.099 5.099 25 C -0.079 4.079 26 N -0.182 5.182 27 N -0.043 5.043 28 N -0.061 5.061 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.579 -14.260 4.333 15.328 hybrid contribution 1.051 0.005 -0.753 1.293 sum -2.528 -14.255 3.580 14.914 Atomic orbital electron populations 1.21092 0.89302 1.03636 1.03519 1.19644 0.97181 0.90436 0.99351 1.21067 0.92708 0.97469 0.97189 1.20608 0.94380 0.94836 0.97932 1.17989 0.82008 0.87540 0.87867 1.90659 1.67744 1.40233 1.43971 1.43750 1.19873 1.15437 1.35865 1.18854 1.30359 1.00360 0.96155 0.87884 1.25332 0.92526 0.94702 0.99558 1.69712 1.41705 1.09255 1.27633 0.86351 0.78437 0.79124 0.81562 1.17468 1.23942 1.20642 1.22193 0.96119 0.90200 0.90600 1.22709 0.97378 1.02190 0.94691 1.22441 0.96426 0.99559 0.97470 1.22252 0.97305 1.01513 0.94345 1.22520 0.95364 0.99334 1.00075 1.21461 1.01031 0.90471 0.98498 1.20674 0.90263 0.99571 1.03247 1.17490 0.90358 0.81582 1.09137 1.48985 1.06539 1.06833 1.47565 1.27408 1.02667 0.80273 0.97505 1.74439 0.94434 1.27941 1.21379 1.78066 1.18118 0.97883 1.10184 1.82745 0.89789 1.11976 1.21597 0.90428 0.89487 0.91047 0.83747 0.91367 0.89675 0.89384 0.92321 0.92164 0.91883 0.92451 0.91047 0.92506 0.89936 0.83607 0.84664 0.74649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.77 36.01 0.32 -1.07 16 2 C -0.06 -0.85 5.89 -104.51 -0.62 -1.46 16 3 C -0.06 -1.00 9.25 -39.20 -0.36 -1.36 16 4 C -0.07 -1.26 5.13 -104.95 -0.54 -1.80 16 5 C 0.45 10.06 5.28 -12.45 -0.07 9.99 16 6 O -0.54 -14.26 12.06 5.27 0.06 -14.20 16 7 N -0.43 -9.24 2.18 -107.69 -0.23 -9.47 16 8 C -0.33 -8.38 8.50 -15.00 -0.13 -8.50 16 9 H 0.10 2.70 6.54 -52.49 -0.34 2.36 16 10 C 0.09 2.45 4.86 -17.45 -0.08 2.37 16 11 N -0.85 -24.23 13.95 55.50 0.77 -23.46 16 12 Si 0.91 22.98 24.55 -169.99 -4.17 18.81 16 13 H -0.25 -6.70 6.15 56.52 0.35 -6.35 16 14 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.11 1.85 2.34 -66.81 -0.16 1.69 16 17 C -0.13 -1.99 6.40 -25.03 -0.16 -2.15 16 18 C -0.12 -1.48 6.91 -24.70 -0.17 -1.65 16 19 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 20 C -0.13 -1.99 5.46 -25.61 -0.14 -2.13 16 21 C -0.10 -1.31 7.31 -39.20 -0.29 -1.60 16 22 C -0.12 -1.26 9.47 -39.47 -0.37 -1.63 16 23 C 0.11 1.30 6.68 -83.55 -0.56 0.74 16 24 N -0.31 -3.63 3.82 -11.70 -0.04 -3.68 16 25 C 0.22 2.07 12.14 -90.12 -1.09 0.97 16 26 N -0.33 -4.12 12.15 29.65 0.36 -3.76 16 27 N -0.05 -0.67 13.39 60.35 0.81 0.13 16 28 N -0.08 -1.03 10.12 60.35 0.61 -0.42 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.05 5.71 -51.93 -0.30 0.75 16 31 H 0.07 0.74 8.04 -51.93 -0.42 0.33 16 32 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 1.23 4.54 -51.93 -0.24 1.00 16 35 H 0.09 1.58 6.06 -51.93 -0.31 1.26 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.67 7.40 -51.93 -0.38 0.28 16 42 H 0.08 1.47 7.50 -51.93 -0.39 1.08 16 43 H 0.15 1.95 5.07 -52.48 -0.27 1.68 16 44 H 0.14 0.89 6.89 -52.49 -0.36 0.53 16 45 H 0.24 0.97 7.21 -52.48 -0.38 0.59 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -32.22 354.01 -6.63 -38.85 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.54 Total: 1.15 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -4.59 Total: -9.29 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 2.27 Total: -40.65 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.06 Total: -14.20 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.17 Total: 18.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.22 -6.63 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.046 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds