Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37743 * 119.95864 * 2 1 4 4 C 1.39738 * 119.91143 * 180.02562 * 3 2 1 5 5 C 1.47578 * 120.08334 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99913 * 319.63207 * 5 4 3 7 7 N 1.34781 * 120.00045 * 139.64226 * 5 4 3 8 8 C 1.36871 * 120.00062 * 174.78360 * 7 5 4 9 9 H 1.08001 * 119.99996 * 142.52831 * 8 7 5 10 10 C 1.39041 * 119.99878 * 322.52413 * 8 7 5 11 11 N 1.31369 * 120.00321 * 160.45628 * 10 8 7 12 12 Si 1.86804 * 119.99915 * 340.45205 * 10 8 7 13 13 H 1.48497 * 109.46766 * 94.37516 * 12 10 8 14 14 H 1.48502 * 109.47003 * 214.37261 * 12 10 8 15 15 H 1.48498 * 109.47207 * 334.37456 * 12 10 8 16 16 C 1.46499 * 119.99691 * 354.77423 * 7 5 4 17 17 C 1.54272 * 110.03423 * 233.49973 * 16 7 5 18 18 C 1.54961 * 104.16089 * 217.13934 * 17 16 7 19 19 C 1.54891 * 102.77928 * 37.88611 * 18 17 16 20 20 C 1.53877 * 110.03282 * 116.28573 * 16 7 5 21 21 C 1.39774 * 119.82778 * 359.97438 * 4 3 2 22 22 C 1.37712 * 119.91548 * 0.25723 * 21 4 3 23 23 C 1.39017 * 119.94920 * 180.02562 * 2 1 3 24 24 N 1.39958 * 119.92026 * 0.02562 * 23 2 1 25 25 C 1.35129 * 127.39869 * 185.71826 * 24 23 2 26 26 N 1.30717 * 107.26771 * 179.97438 * 25 24 23 27 27 N 1.28416 * 110.65817 * 359.97438 * 26 25 24 28 28 N 1.28949 * 110.21037 * 359.75040 * 27 26 25 29 29 H 1.08998 * 109.47090 * 96.29941 * 1 2 3 30 30 H 1.09001 * 109.47460 * 216.30523 * 1 2 3 31 31 H 1.09007 * 109.46937 * 336.30327 * 1 2 3 32 32 H 1.07998 * 120.04477 * 0.04429 * 3 2 1 33 33 H 0.96992 * 120.00570 * 180.02562 * 11 10 8 34 34 H 1.09006 * 110.02199 * 354.89150 * 16 7 5 35 35 H 1.08999 * 110.48170 * 335.78950 * 17 16 7 36 36 H 1.08995 * 110.48415 * 98.42606 * 17 16 7 37 37 H 1.08997 * 110.72249 * 279.57523 * 18 17 16 38 38 H 1.09000 * 110.92255 * 156.29742 * 18 17 16 39 39 H 1.08996 * 110.48739 * 203.40365 * 19 18 17 40 40 H 1.09005 * 110.59715 * 80.81331 * 19 18 17 41 41 H 1.09001 * 110.03289 * 238.56947 * 20 16 7 42 42 H 1.09005 * 110.02875 * 359.94695 * 20 16 7 43 43 H 1.08003 * 120.04594 * 179.97438 * 21 4 3 44 44 H 1.07995 * 119.95324 * 179.74458 * 22 21 4 45 45 H 1.08008 * 126.36759 * 359.95452 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1934 0.0000 4 6 3.5923 1.1922 -0.0005 5 6 4.3331 2.4686 0.0000 6 8 3.9440 3.3978 -0.6814 7 7 5.4409 2.6045 0.7555 8 6 6.1878 3.7487 0.6755 9 1 6.6414 4.1608 1.5648 10 6 6.3626 4.3804 -0.5507 11 7 6.7306 5.6407 -0.5939 12 14 6.0743 3.4368 -2.1370 13 1 4.6830 3.6655 -2.6030 14 1 7.0274 3.9083 -3.1736 15 1 6.2834 1.9866 -1.8953 16 6 5.8455 1.5275 1.6626 17 6 6.0340 2.0816 3.0900 18 6 7.2505 1.2974 3.6435 19 6 8.1761 1.1834 2.4068 20 6 7.2068 0.9563 1.2285 21 6 4.2865 -0.0209 -0.0005 22 6 3.5917 -1.2099 -0.0054 23 6 2.2011 -1.2045 -0.0005 24 7 1.4985 -2.4150 -0.0016 25 6 2.0103 -3.6611 0.1047 26 7 1.0071 -4.4978 0.0595 27 7 -0.1040 -3.8665 -0.0676 28 7 0.1080 -2.5952 -0.1068 29 1 -0.3633 -0.1128 -1.0214 30 1 -0.3634 -0.8282 0.6085 31 1 -0.3633 0.9411 0.4130 32 1 1.6550 2.1287 0.0007 33 1 6.8522 6.0815 -1.4492 34 1 5.0931 0.7388 1.6645 35 1 6.2505 3.1494 3.0591 36 1 5.1476 1.8885 3.6942 37 1 6.9471 0.3099 3.9911 38 1 7.7407 1.8529 4.4430 39 1 8.8524 0.3353 2.5134 40 1 8.7407 2.1049 2.2642 41 1 7.1152 -0.1098 1.0205 42 1 7.5659 1.4798 0.3423 43 1 5.3665 -0.0259 -0.0014 44 1 4.1274 -2.1475 -0.0095 45 1 3.0544 -3.9180 0.2076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078208713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 121.261394 kcal Electronic energy + Delta-G solvation = -30336.955864 eV Core-core repulsion = 26357.594560 eV Total energy + Delta-G solvation = -3979.361305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.30006 -41.80903 -40.16069 -38.65124 -36.22485 -35.47467 -34.47584 -33.87029 -33.09703 -31.50350 -29.54157 -28.91669 -28.18527 -27.45224 -25.65911 -24.57161 -23.66555 -22.59482 -21.99843 -21.39782 -20.81764 -19.60130 -19.09493 -17.93663 -17.75855 -17.34416 -17.27325 -16.75865 -16.42482 -15.86687 -15.60032 -15.38977 -15.21165 -15.04334 -14.89995 -14.69287 -14.56840 -14.13666 -14.02816 -13.79041 -13.56131 -13.38848 -13.37386 -12.87646 -12.68311 -12.57888 -12.49825 -12.33614 -12.21861 -11.89722 -11.81374 -11.80238 -11.78871 -11.55267 -11.41218 -11.26075 -10.77778 -10.55704 -10.06514 -9.68520 -9.58915 -8.45832 -6.11806 -0.88402 0.07787 0.32176 0.69208 1.16431 1.21892 1.30347 1.50057 1.85977 2.36424 2.47129 2.64140 2.99848 3.08231 3.31465 3.53433 3.61894 3.71138 3.82189 3.84128 3.89994 4.02547 4.12980 4.19986 4.28781 4.37371 4.51877 4.57468 4.66744 4.68379 4.71155 4.74077 4.77729 4.89129 4.94171 5.05073 5.08247 5.17698 5.19031 5.24420 5.28094 5.32211 5.40154 5.51777 5.62259 5.66717 5.67535 5.86690 6.70729 6.84276 7.29142 7.30064 7.79195 8.61777 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.003891 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.010694 B = 7193.547840 C = 8296.776565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 C -0.070 4.070 4 C -0.105 4.105 5 C 0.458 3.542 6 O -0.593 6.593 7 N -0.443 5.443 8 C -0.324 4.324 9 H 0.079 0.921 10 C 0.044 3.956 11 N -0.904 5.904 12 Si 0.955 3.045 13 H -0.282 1.282 14 H -0.311 1.311 15 H -0.252 1.252 16 C 0.107 3.893 17 C -0.136 4.136 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.135 4.135 21 C -0.089 4.089 22 C -0.089 4.089 23 C 0.125 3.875 24 N -0.322 5.322 25 C 0.245 3.755 26 N -0.355 5.355 27 N -0.066 5.066 28 N -0.094 5.094 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.273 0.727 34 H 0.114 0.886 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.102 0.898 42 H 0.046 0.954 43 H 0.158 0.842 44 H 0.197 0.803 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -20.507 5.906 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.090 4.090 4 C -0.109 4.109 5 C 0.251 3.749 6 O -0.481 6.481 7 N -0.162 5.162 8 C -0.451 4.451 9 H 0.097 0.903 10 C -0.160 4.160 11 N -0.541 5.541 12 Si 0.787 3.213 13 H -0.210 1.210 14 H -0.241 1.241 15 H -0.176 1.176 16 C 0.004 3.996 17 C -0.174 4.174 18 C -0.146 4.146 19 C -0.153 4.153 20 C -0.173 4.173 21 C -0.108 4.108 22 C -0.109 4.109 23 C 0.032 3.968 24 N -0.111 5.111 25 C -0.050 4.050 26 N -0.204 5.204 27 N -0.061 5.061 28 N -0.079 5.079 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.175 0.825 44 H 0.214 0.786 45 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -3.226 -20.337 5.437 21.297 hybrid contribution 0.690 1.616 -0.985 2.015 sum -2.535 -18.721 4.452 19.409 Atomic orbital electron populations 1.21079 0.88558 1.04030 1.03566 1.19705 0.97804 0.90346 0.99319 1.20939 0.92236 0.97981 0.97808 1.20244 0.94658 0.93714 1.02283 1.18871 0.81710 0.88731 0.85601 1.90616 1.68928 1.42727 1.45803 1.43884 1.19767 1.15782 1.36744 1.18645 1.30009 1.01761 0.94711 0.90316 1.25884 0.93221 0.95150 1.01783 1.69803 1.46059 1.10668 1.27584 0.85656 0.76066 0.80067 0.79557 1.20990 1.24140 1.17620 1.22576 0.97952 0.89320 0.89702 1.22713 0.99611 1.00209 0.94884 1.22419 0.94437 1.00730 0.97036 1.22252 0.97472 1.01493 0.94101 1.22554 0.94263 1.01365 0.99088 1.21549 1.01573 0.89877 0.97802 1.21134 0.89331 1.00680 0.99771 1.17625 0.91096 0.81308 1.06747 1.48984 1.06160 1.07324 1.48621 1.28561 1.04235 0.78496 0.93742 1.74413 0.94807 1.28850 1.22378 1.78090 1.19228 0.98186 1.10560 1.82754 0.91120 1.11909 1.22115 0.90429 0.89433 0.90441 0.85360 0.91813 0.86844 0.93565 0.91051 0.88703 0.91451 0.89088 0.94043 0.87959 0.93528 0.82499 0.78592 0.68877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.77 71.24 0.62 -1.88 16 2 C -0.07 -1.66 5.89 -19.79 -0.12 -1.77 16 3 C -0.07 -2.09 9.25 22.52 0.21 -1.88 16 4 C -0.10 -3.44 5.13 -20.08 -0.10 -3.55 16 5 C 0.46 20.61 5.28 86.71 0.46 21.07 16 6 O -0.59 -32.83 12.06 -4.07 -0.05 -32.88 16 7 N -0.44 -19.32 2.18 -612.88 -1.33 -20.65 16 8 C -0.32 -17.35 8.50 84.10 0.71 -16.64 16 9 H 0.08 4.50 6.54 -2.91 -0.02 4.48 16 10 C 0.04 2.57 4.86 84.95 0.41 2.99 16 11 N -0.90 -55.51 13.95 21.68 0.30 -55.20 16 12 Si 0.96 49.45 24.55 68.60 1.68 51.13 16 13 H -0.28 -15.98 6.15 99.48 0.61 -15.37 16 14 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 15 H -0.25 -11.54 7.11 99.48 0.71 -10.83 16 16 C 0.11 3.28 2.34 45.72 0.11 3.39 16 17 C -0.14 -3.98 6.40 31.70 0.20 -3.78 16 18 C -0.11 -2.31 6.91 31.91 0.22 -2.09 16 19 C -0.12 -2.71 6.83 31.67 0.22 -2.49 16 20 C -0.13 -3.56 5.46 31.32 0.17 -3.39 16 21 C -0.09 -2.00 7.31 22.52 0.16 -1.84 16 22 C -0.09 -1.27 9.47 22.34 0.21 -1.06 16 23 C 0.13 2.38 6.68 38.23 0.26 2.63 16 24 N -0.32 -5.83 3.82 -190.93 -0.73 -6.56 16 25 C 0.24 3.00 12.14 180.17 2.19 5.19 16 26 N -0.36 -7.21 12.15 -60.10 -0.73 -7.94 16 27 N -0.07 -1.65 13.39 37.02 0.50 -1.16 16 28 N -0.09 -2.22 10.12 37.02 0.37 -1.85 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.93 5.71 -2.39 -0.01 1.91 16 31 H 0.08 1.55 8.04 -2.38 -0.02 1.53 16 32 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 34 H 0.11 2.81 4.54 -2.38 -0.01 2.80 16 35 H 0.05 1.74 6.06 -2.39 -0.01 1.73 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.10 1.76 7.40 -2.39 -0.02 1.74 16 42 H 0.05 1.60 7.50 -2.38 -0.02 1.58 16 43 H 0.16 3.27 5.07 -2.91 -0.01 3.26 16 44 H 0.20 0.48 6.89 -2.91 -0.02 0.46 16 45 H 0.30 -0.46 7.21 -2.91 -0.02 -0.48 16 Total: -1.00 -81.12 354.01 6.90 -74.22 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.95 Total: 5.97 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.94 Total: -5.09 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -1.62 Total: -93.36 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.05 Total: -32.88 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 1.68 Total: 51.13 kcal Total: -81.12 6.90 -74.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.485 kcal (2) G-P(sol) polarization free energy of solvation -81.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds