Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38670 * 120.42372 * 2 1 4 4 C 1.38624 * 118.42409 * 180.23842 * 3 2 1 5 5 C 1.38228 * 119.16146 * 359.75631 * 4 3 2 6 6 N 1.31860 * 120.76207 * 359.97438 * 5 4 3 7 7 C 1.31878 * 121.72570 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.61855 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47472 * 210.13409 * 8 7 6 10 10 N 1.46502 * 109.47056 * 330.12608 * 8 7 6 11 11 S 1.65594 * 120.00503 * 241.99065 * 10 8 7 12 12 O 1.42101 * 106.40546 * 181.87172 * 11 10 8 13 13 O 1.42109 * 106.39962 * 314.78181 * 11 10 8 14 14 N 1.65592 * 107.22072 * 68.32577 * 11 10 8 15 15 C 1.46499 * 120.00090 * 83.04480 * 14 11 10 16 16 C 1.46505 * 119.99917 * 263.04684 * 14 11 10 17 17 C 1.50699 * 109.47293 * 114.42466 * 16 14 11 18 18 H 1.08003 * 119.99702 * 356.19461 * 17 16 14 19 19 C 1.37878 * 120.00248 * 176.18915 * 17 16 14 20 20 N 1.31514 * 119.99770 * 6.55282 * 19 17 16 21 21 Si 1.86792 * 120.00090 * 186.55019 * 19 17 16 22 22 H 1.48502 * 109.47414 * 1.28147 * 21 19 17 23 23 H 1.48498 * 109.47120 * 121.27961 * 21 19 17 24 24 H 1.48503 * 109.47444 * 241.27987 * 21 19 17 25 25 C 1.52999 * 109.47612 * 90.13017 * 8 7 6 26 26 C 1.52994 * 109.47457 * 178.78139 * 25 8 7 27 27 C 1.53002 * 109.46602 * 298.78180 * 25 8 7 28 28 H 1.09000 * 109.47547 * 266.31129 * 1 2 3 29 29 H 1.09004 * 109.46749 * 26.31209 * 1 2 3 30 30 H 1.09007 * 109.46928 * 146.30619 * 1 2 3 31 31 H 1.08008 * 120.78136 * 359.96528 * 3 2 1 32 32 H 1.08001 * 120.42109 * 179.72527 * 4 3 2 33 33 H 1.07994 * 119.61957 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99538 * 61.98646 * 10 8 7 35 35 H 1.09000 * 109.47303 * 89.99893 * 15 14 11 36 36 H 1.08999 * 109.47394 * 210.00213 * 15 14 11 37 37 H 1.08991 * 109.47067 * 330.00130 * 15 14 11 38 38 H 1.09004 * 109.46914 * 234.42019 * 16 14 11 39 39 H 1.08994 * 109.47101 * 354.42368 * 16 14 11 40 40 H 0.96999 * 119.99784 * 179.97438 * 20 19 17 41 41 H 1.08991 * 109.47139 * 58.77551 * 25 8 7 42 42 H 1.09002 * 109.47178 * 65.24904 * 26 25 8 43 43 H 1.08996 * 109.47531 * 185.24794 * 26 25 8 44 44 H 1.09003 * 109.47294 * 305.25101 * 26 25 8 45 45 H 1.09001 * 109.47695 * 59.99815 * 27 25 8 46 46 H 1.09007 * 109.46887 * 180.02562 * 27 25 8 47 47 H 1.09004 * 109.47179 * 299.99519 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2256 -0.0824 -0.0048 6 7 3.5254 -1.1997 0.0007 7 6 2.2066 -1.1917 0.0057 8 6 1.4539 -2.4972 0.0113 9 1 0.5005 -2.3691 -0.5013 10 7 2.2449 -3.5200 -0.6775 11 16 1.6563 -4.2380 -2.0487 12 8 2.6236 -5.2008 -2.4444 13 8 0.2996 -4.5646 -1.7798 14 7 1.6331 -3.0833 -3.2354 15 6 2.8503 -2.7902 -3.9961 16 6 0.3953 -2.3549 -3.5245 17 6 0.5745 -0.9005 -3.1733 18 1 1.4942 -0.5644 -2.7176 19 6 -0.4354 0.0013 -3.4338 20 7 -1.6014 -0.4247 -3.8683 21 14 -0.1477 1.8279 -3.1697 22 1 1.2469 2.0480 -2.7096 23 1 -0.3679 2.5534 -4.4466 24 1 -1.0935 2.3347 -2.1430 25 6 1.2016 -2.9344 1.4556 26 6 0.4110 -4.2442 1.4614 27 6 2.5404 -3.1436 2.1662 28 1 -0.3634 -0.0661 1.0255 29 1 -0.3633 0.9212 -0.4555 30 1 -0.3633 -0.8551 -0.5701 31 1 1.6889 2.1423 -0.0006 32 1 4.1736 2.0591 -0.0097 33 1 5.3045 -0.1287 -0.0083 34 1 3.1136 -3.7765 -0.3303 35 1 2.8927 -3.4327 -4.8756 36 1 2.8406 -1.7461 -4.3090 37 1 3.7232 -2.9736 -3.3698 38 1 0.1592 -2.4462 -4.5848 39 1 -0.4192 -2.7737 -2.9336 40 1 -2.3120 0.2096 -4.0512 41 1 0.6317 -2.1636 1.9742 42 1 1.0188 -5.0374 1.0260 43 1 0.1508 -4.5071 2.4867 44 1 -0.4999 -4.1213 0.8754 45 1 3.1038 -2.2105 2.1621 46 1 2.3607 -3.4555 3.1951 47 1 3.1105 -3.9145 1.6476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115583620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -47.886194 kcal Electronic energy + Delta-G solvation = -31089.712426 eV Core-core repulsion = 27206.167532 eV Total energy + Delta-G solvation = -3883.544894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30081 -37.22341 -36.50208 -35.47184 -35.18184 -33.34705 -32.46122 -32.33866 -31.35033 -27.69695 -27.21395 -26.80876 -25.95217 -25.21038 -22.30347 -22.14803 -21.62046 -19.80024 -18.83442 -17.37886 -16.80807 -16.63540 -16.37603 -16.20710 -15.35984 -14.97363 -14.82880 -14.55335 -14.20397 -13.99348 -13.59728 -13.31188 -13.21077 -12.98423 -12.76686 -12.44205 -12.32000 -12.16471 -12.12284 -12.02061 -11.87299 -11.63377 -11.56869 -11.40948 -11.21287 -11.18332 -10.98166 -10.93831 -10.71433 -10.61469 -10.57567 -10.48351 -10.08682 -9.77798 -9.40774 -9.31474 -8.90013 -8.51649 -8.40089 -7.99124 -6.15296 -4.18408 1.30148 1.45330 1.62075 3.12903 3.25589 3.27253 3.55334 4.08515 4.20348 4.30541 4.52089 4.93465 4.98441 5.08752 5.11201 5.18052 5.20593 5.30992 5.34857 5.38767 5.61247 5.68263 5.76969 5.83135 5.86136 5.91843 6.02573 6.05508 6.08334 6.12282 6.18430 6.22657 6.25882 6.37819 6.43475 6.55897 6.57323 6.66578 6.68305 6.73676 7.05277 7.33781 7.38519 7.49382 7.65934 7.83719 8.16080 8.32861 8.87383 9.46030 10.92940 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009548 B = 0.007558 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.900210 B = 3703.879244 C = 4975.322384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.097 4.097 3 C -0.080 4.080 4 C -0.175 4.175 5 C 0.083 3.917 6 N -0.466 5.466 7 C 0.133 3.867 8 C 0.214 3.786 9 H 0.119 0.881 10 N -1.109 6.109 11 S 2.780 3.220 12 O -1.000 7.000 13 O -0.978 6.978 14 N -0.995 5.995 15 C 0.111 3.889 16 C 0.241 3.759 17 C -0.526 4.526 18 H 0.064 0.936 19 C 0.071 3.929 20 N -0.886 5.886 21 Si 0.873 3.127 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.281 1.281 25 C -0.097 4.097 26 C -0.146 4.146 27 C -0.141 4.141 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.413 0.587 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.030 0.970 39 H 0.054 0.946 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 0.842 10.426 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 C -0.106 4.106 4 C -0.195 4.195 5 C -0.074 4.074 6 N -0.175 5.175 7 C -0.007 4.007 8 C 0.105 3.895 9 H 0.136 0.864 10 N -0.867 5.867 11 S 2.788 3.212 12 O -0.984 6.984 13 O -0.961 6.961 14 N -0.838 5.838 15 C -0.036 4.036 16 C 0.119 3.881 17 C -0.565 4.565 18 H 0.082 0.918 19 C -0.132 4.132 20 N -0.525 5.525 21 Si 0.701 3.299 22 H -0.191 1.191 23 H -0.214 1.214 24 H -0.207 1.207 25 C -0.118 4.118 26 C -0.203 4.203 27 C -0.198 4.198 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.165 0.835 34 H 0.247 0.753 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.352 -0.783 10.178 12.580 hybrid contribution 0.300 2.657 0.011 2.674 sum 7.652 1.874 10.189 12.880 Atomic orbital electron populations 1.20976 0.90048 1.05201 1.01536 1.20589 0.97750 0.93084 0.98481 1.21405 0.94153 0.98034 0.96989 1.21984 0.95181 0.99352 1.02957 1.22528 0.99728 0.87806 0.97340 1.67312 1.07629 1.31024 1.11493 1.21175 0.89794 0.94390 0.95346 1.19706 0.93409 0.82414 0.93922 0.86377 1.55916 1.31596 1.54444 1.44738 1.01893 0.73136 0.73433 0.72729 1.93549 1.63363 1.59331 1.82189 1.93584 1.35196 1.82730 1.84634 1.57571 1.18431 1.57729 1.50064 1.21135 0.84948 1.02278 0.95217 1.19247 0.79596 0.91317 0.97960 1.21464 1.01581 0.92476 1.40999 0.91772 1.24840 0.94885 0.98136 0.95323 1.69955 1.02889 1.34364 1.45248 0.86891 0.78677 0.86458 0.77906 1.19123 1.21396 1.20722 1.21388 0.97361 0.98614 0.94446 1.21817 1.00712 0.96481 1.01292 1.21781 0.96681 1.02186 0.99191 0.91616 0.91647 0.88547 0.85701 0.85666 0.83503 0.75272 0.93992 0.90604 0.93266 0.95159 0.92794 0.92728 0.90375 0.92733 0.92877 0.91339 0.92379 0.93265 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.11 36.00 0.33 -1.66 16 2 C -0.10 -1.59 5.35 -104.48 -0.56 -2.14 16 3 C -0.08 -1.21 9.85 -39.28 -0.39 -1.60 16 4 C -0.17 -2.36 10.11 -39.44 -0.40 -2.75 16 5 C 0.08 1.14 11.18 -17.54 -0.20 0.95 16 6 N -0.47 -7.21 8.60 -9.47 -0.08 -7.29 16 7 C 0.13 2.15 4.99 -82.59 -0.41 1.74 16 8 C 0.21 3.46 1.92 -69.08 -0.13 3.33 16 9 H 0.12 2.17 5.39 -51.93 -0.28 1.89 16 10 N -1.11 -18.23 4.32 -5.88 -0.03 -18.26 16 11 S 2.78 54.67 6.01 -107.50 -0.65 54.02 16 12 O -1.00 -21.08 17.46 -57.17 -1.00 -22.08 16 13 O -0.98 -21.35 15.89 -57.17 -0.91 -22.26 16 14 N -1.00 -20.58 3.33 -123.05 -0.41 -20.99 16 15 C 0.11 2.03 10.19 59.85 0.61 2.64 16 16 C 0.24 5.76 5.64 -5.19 -0.03 5.73 16 17 C -0.53 -12.71 7.81 -34.44 -0.27 -12.98 16 18 H 0.06 1.55 7.20 -52.48 -0.38 1.17 16 19 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 20 N -0.89 -23.85 13.30 55.43 0.74 -23.11 16 21 Si 0.87 19.45 27.46 -169.99 -4.67 14.78 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.07 7.04 56.52 0.40 -5.67 16 25 C -0.10 -1.31 2.78 -90.62 -0.25 -1.57 16 26 C -0.15 -1.97 8.97 37.15 0.33 -1.64 16 27 C -0.14 -1.72 8.59 37.16 0.32 -1.40 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.13 5.98 -51.93 -0.31 0.82 16 30 H 0.10 1.79 5.56 -51.93 -0.29 1.51 16 31 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.41 6.13 7.34 -34.46 -0.25 5.87 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.42 7.51 -51.93 -0.39 1.03 16 37 H 0.05 0.82 7.96 -51.93 -0.41 0.40 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.39 6.69 -51.93 -0.35 1.04 16 40 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.76 7.80 -51.93 -0.41 0.35 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.70 6.79 -51.93 -0.35 0.35 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -29.67 383.85 -9.49 -39.16 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.13 Total: 9.90 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.14 Total: -9.66 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: 0.22 Total: -69.65 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.91 Total: -44.34 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.67 Total: 14.78 kcal Atomic # 16 Polarization: 54.67 SS G_CDS: -0.65 Total: 54.02 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.67 -9.49 -39.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115583620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.730 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds