Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38670 * 120.42372 * 2 1 4 4 C 1.38624 * 118.42409 * 180.23842 * 3 2 1 5 5 C 1.38228 * 119.16146 * 359.75631 * 4 3 2 6 6 N 1.31860 * 120.76207 * 359.97438 * 5 4 3 7 7 C 1.31878 * 121.72570 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.61855 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47472 * 210.13409 * 8 7 6 10 10 N 1.46502 * 109.47056 * 330.12608 * 8 7 6 11 11 S 1.65594 * 120.00503 * 241.99065 * 10 8 7 12 12 O 1.42101 * 106.40546 * 181.87172 * 11 10 8 13 13 O 1.42109 * 106.39962 * 314.78181 * 11 10 8 14 14 N 1.65592 * 107.22072 * 68.32577 * 11 10 8 15 15 C 1.46499 * 120.00090 * 83.04480 * 14 11 10 16 16 C 1.46505 * 119.99917 * 263.04684 * 14 11 10 17 17 C 1.50699 * 109.47293 * 114.42466 * 16 14 11 18 18 H 1.08003 * 119.99702 * 356.19461 * 17 16 14 19 19 C 1.37878 * 120.00248 * 176.18915 * 17 16 14 20 20 N 1.31514 * 119.99770 * 6.55282 * 19 17 16 21 21 Si 1.86792 * 120.00090 * 186.55019 * 19 17 16 22 22 H 1.48502 * 109.47414 * 1.28147 * 21 19 17 23 23 H 1.48498 * 109.47120 * 121.27961 * 21 19 17 24 24 H 1.48503 * 109.47444 * 241.27987 * 21 19 17 25 25 C 1.52999 * 109.47612 * 90.13017 * 8 7 6 26 26 C 1.52994 * 109.47457 * 178.78139 * 25 8 7 27 27 C 1.53002 * 109.46602 * 298.78180 * 25 8 7 28 28 H 1.09000 * 109.47547 * 266.31129 * 1 2 3 29 29 H 1.09004 * 109.46749 * 26.31209 * 1 2 3 30 30 H 1.09007 * 109.46928 * 146.30619 * 1 2 3 31 31 H 1.08008 * 120.78136 * 359.96528 * 3 2 1 32 32 H 1.08001 * 120.42109 * 179.72527 * 4 3 2 33 33 H 1.07994 * 119.61957 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99538 * 61.98646 * 10 8 7 35 35 H 1.09000 * 109.47303 * 89.99893 * 15 14 11 36 36 H 1.08999 * 109.47394 * 210.00213 * 15 14 11 37 37 H 1.08991 * 109.47067 * 330.00130 * 15 14 11 38 38 H 1.09004 * 109.46914 * 234.42019 * 16 14 11 39 39 H 1.08994 * 109.47101 * 354.42368 * 16 14 11 40 40 H 0.96999 * 119.99784 * 179.97438 * 20 19 17 41 41 H 1.08991 * 109.47139 * 58.77551 * 25 8 7 42 42 H 1.09002 * 109.47178 * 65.24904 * 26 25 8 43 43 H 1.08996 * 109.47531 * 185.24794 * 26 25 8 44 44 H 1.09003 * 109.47294 * 305.25101 * 26 25 8 45 45 H 1.09001 * 109.47695 * 59.99815 * 27 25 8 46 46 H 1.09007 * 109.46887 * 180.02562 * 27 25 8 47 47 H 1.09004 * 109.47179 * 299.99519 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2256 -0.0824 -0.0048 6 7 3.5254 -1.1997 0.0007 7 6 2.2066 -1.1917 0.0057 8 6 1.4539 -2.4972 0.0113 9 1 0.5005 -2.3691 -0.5013 10 7 2.2449 -3.5200 -0.6775 11 16 1.6563 -4.2380 -2.0487 12 8 2.6236 -5.2008 -2.4444 13 8 0.2996 -4.5646 -1.7798 14 7 1.6331 -3.0833 -3.2354 15 6 2.8503 -2.7902 -3.9961 16 6 0.3953 -2.3549 -3.5245 17 6 0.5745 -0.9005 -3.1733 18 1 1.4942 -0.5644 -2.7176 19 6 -0.4354 0.0013 -3.4338 20 7 -1.6014 -0.4247 -3.8683 21 14 -0.1477 1.8279 -3.1697 22 1 1.2469 2.0480 -2.7096 23 1 -0.3679 2.5534 -4.4466 24 1 -1.0935 2.3347 -2.1430 25 6 1.2016 -2.9344 1.4556 26 6 0.4110 -4.2442 1.4614 27 6 2.5404 -3.1436 2.1662 28 1 -0.3634 -0.0661 1.0255 29 1 -0.3633 0.9212 -0.4555 30 1 -0.3633 -0.8551 -0.5701 31 1 1.6889 2.1423 -0.0006 32 1 4.1736 2.0591 -0.0097 33 1 5.3045 -0.1287 -0.0083 34 1 3.1136 -3.7765 -0.3303 35 1 2.8927 -3.4327 -4.8756 36 1 2.8406 -1.7461 -4.3090 37 1 3.7232 -2.9736 -3.3698 38 1 0.1592 -2.4462 -4.5848 39 1 -0.4192 -2.7737 -2.9336 40 1 -2.3120 0.2096 -4.0512 41 1 0.6317 -2.1636 1.9742 42 1 1.0188 -5.0374 1.0260 43 1 0.1508 -4.5071 2.4867 44 1 -0.4999 -4.1213 0.8754 45 1 3.1038 -2.2105 2.1621 46 1 2.3607 -3.4555 3.1951 47 1 3.1105 -3.9145 1.6476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115583620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = -67.546886 kcal Electronic energy + Delta-G solvation = -31090.564978 eV Core-core repulsion = 27206.167532 eV Total energy + Delta-G solvation = -3884.397446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44456 -38.53097 -38.04724 -37.21226 -36.87319 -34.62174 -34.27692 -33.53659 -32.52744 -29.53620 -28.38961 -27.88290 -27.13724 -26.91150 -24.02676 -23.43513 -22.74007 -20.99308 -20.33599 -18.96760 -18.39945 -18.30440 -17.89675 -17.39831 -16.94108 -16.40823 -16.10474 -15.94127 -15.37418 -15.30332 -15.10646 -14.91151 -14.58789 -14.13594 -14.04515 -13.93231 -13.81270 -13.64632 -13.45402 -13.33088 -13.23847 -13.15519 -13.00933 -12.94761 -12.83000 -12.71826 -12.45033 -12.37458 -12.27183 -12.06135 -11.90005 -11.68392 -11.67922 -11.60090 -10.70678 -10.49247 -10.44005 -10.10051 -9.75934 -9.51375 -8.11413 -6.19398 -0.28417 0.31927 0.48959 1.35359 1.42661 1.50895 2.00711 2.43631 2.63353 2.96748 3.21989 3.36909 3.44786 3.78999 3.95281 4.01161 4.05683 4.10153 4.19940 4.24621 4.26113 4.46034 4.65446 4.69938 4.73773 4.77710 4.81248 4.84296 4.86555 4.89777 4.94057 5.06741 5.10004 5.14581 5.23007 5.32305 5.35862 5.37663 5.47826 5.50036 5.54077 5.55655 5.77602 5.87691 5.93682 6.19838 6.26137 6.90613 7.20252 7.48409 8.97832 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009548 B = 0.007558 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.900210 B = 3703.879244 C = 4975.322384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.094 4.094 4 C -0.168 4.168 5 C 0.080 3.920 6 N -0.476 5.476 7 C 0.121 3.879 8 C 0.213 3.787 9 H 0.091 0.909 10 N -1.094 6.094 11 S 2.794 3.206 12 O -1.012 7.012 13 O -1.003 7.003 14 N -1.002 6.002 15 C 0.106 3.894 16 C 0.255 3.745 17 C -0.510 4.510 18 H 0.067 0.933 19 C 0.031 3.969 20 N -0.924 5.924 21 Si 0.923 3.077 22 H -0.252 1.252 23 H -0.298 1.298 24 H -0.271 1.271 25 C -0.094 4.094 26 C -0.146 4.146 27 C -0.134 4.134 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.179 0.821 34 H 0.423 0.577 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.005 0.995 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 2.177 12.117 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.119 4.119 3 C -0.120 4.120 4 C -0.188 4.188 5 C -0.078 4.078 6 N -0.184 5.184 7 C -0.018 4.018 8 C 0.104 3.896 9 H 0.109 0.891 10 N -0.855 5.855 11 S 2.802 3.198 12 O -0.996 6.996 13 O -0.987 6.987 14 N -0.843 5.843 15 C -0.040 4.040 16 C 0.131 3.869 17 C -0.549 4.549 18 H 0.085 0.915 19 C -0.168 4.168 20 N -0.565 5.565 21 Si 0.750 3.250 22 H -0.175 1.175 23 H -0.225 1.225 24 H -0.197 1.197 25 C -0.114 4.114 26 C -0.203 4.203 27 C -0.191 4.191 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.196 0.804 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.023 0.977 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.736 0.540 11.876 15.366 hybrid contribution -0.370 2.218 -0.489 2.301 sum 9.365 2.758 11.387 14.999 Atomic orbital electron populations 1.20886 0.90778 1.03136 1.02514 1.20638 0.97477 0.93883 0.99854 1.21668 0.95228 0.97947 0.97136 1.22346 0.94632 1.00647 1.01155 1.23124 1.01186 0.87428 0.96020 1.67325 1.07136 1.32125 1.11861 1.21057 0.90289 0.94010 0.96423 1.19723 0.92176 0.82669 0.95007 0.89135 1.55533 1.32078 1.54439 1.43475 1.01325 0.72427 0.73104 0.72924 1.93525 1.63431 1.59917 1.82754 1.93552 1.36899 1.83220 1.85035 1.57519 1.18190 1.57456 1.51180 1.21292 0.84527 1.02290 0.95870 1.18845 0.80432 0.91732 0.95848 1.21488 1.01278 0.92317 1.39845 0.91467 1.25439 0.94521 1.01692 0.95173 1.70073 1.03841 1.35623 1.46927 0.86079 0.79535 0.81990 0.77439 1.17525 1.22507 1.19683 1.21391 0.98430 0.98675 0.92923 1.21824 0.99649 0.96415 1.02441 1.21717 0.95459 1.01907 1.00041 0.89157 0.92768 0.91438 0.84655 0.82458 0.80376 0.74046 0.92943 0.91034 0.91267 0.97661 0.95259 0.92857 0.89327 0.93471 0.90311 0.93484 0.92849 0.91355 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 9.11 71.24 0.65 -3.14 16 2 C -0.12 -3.64 5.35 -19.77 -0.11 -3.75 16 3 C -0.09 -2.60 9.85 22.47 0.22 -2.38 16 4 C -0.17 -3.89 10.11 22.36 0.23 -3.66 16 5 C 0.08 1.90 11.18 84.69 0.95 2.84 16 6 N -0.48 -13.54 8.60 -183.89 -1.58 -15.12 16 7 C 0.12 3.77 4.99 42.54 0.21 3.98 16 8 C 0.21 6.80 1.92 44.24 0.08 6.88 16 9 H 0.09 3.45 5.39 -2.39 -0.01 3.44 16 10 N -1.09 -35.42 4.32 -172.52 -0.75 -36.16 16 11 S 2.79 110.85 6.01 -56.49 -0.34 110.51 16 12 O -1.01 -42.15 17.46 -128.00 -2.24 -44.39 16 13 O -1.00 -45.35 15.89 -128.00 -2.03 -47.39 16 14 N -1.00 -41.88 3.33 -543.23 -1.81 -43.69 16 15 C 0.11 3.81 10.19 127.77 1.30 5.11 16 16 C 0.26 12.61 5.64 85.63 0.48 13.10 16 17 C -0.51 -24.96 7.81 25.60 0.20 -24.76 16 18 H 0.07 3.22 7.20 -2.91 -0.02 3.20 16 19 C 0.03 1.60 5.45 84.65 0.46 2.06 16 20 N -0.92 -51.14 13.30 21.45 0.29 -50.86 16 21 Si 0.92 39.67 27.46 68.60 1.88 41.55 16 22 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 23 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.27 -11.16 7.04 99.48 0.70 -10.46 16 25 C -0.09 -2.42 2.78 -10.79 -0.03 -2.45 16 26 C -0.15 -3.86 8.97 71.98 0.65 -3.22 16 27 C -0.13 -2.96 8.59 71.98 0.62 -2.34 16 28 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.84 5.98 -2.38 -0.01 1.82 16 30 H 0.07 2.60 5.56 -2.38 -0.01 2.58 16 31 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.18 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.42 12.01 7.34 -96.75 -0.71 11.30 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 2.62 7.51 -2.39 -0.02 2.60 16 37 H 0.07 2.19 7.96 -2.39 -0.02 2.17 16 38 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 39 H 0.03 1.60 6.69 -2.39 -0.02 1.58 16 40 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.29 7.80 -2.39 -0.02 1.27 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 1.24 6.57 -2.39 -0.02 1.23 16 46 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.06 1.25 6.79 -2.39 -0.02 1.23 16 Total: -1.00 -64.18 383.85 -0.40 -64.58 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.26 Total: 32.70 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 5.91 Total: -11.73 kcal Atomic # 7 Polarization: -141.99 SS G_CDS: -3.85 Total: -145.84 kcal Atomic # 8 Polarization: -87.51 SS G_CDS: -4.27 Total: -91.78 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.88 Total: 41.55 kcal Atomic # 16 Polarization: 110.85 SS G_CDS: -0.34 Total: 110.51 kcal Total: -64.18 -0.40 -64.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115583620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.965 kcal (2) G-P(sol) polarization free energy of solvation -64.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds