Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38279 * 119.93596 * 2 1 4 4 C 1.38122 * 120.06714 * 180.02562 * 3 2 1 5 5 C 1.38833 * 119.93132 * 359.97438 * 4 3 2 6 6 N 1.40223 * 120.06177 * 179.97438 * 5 4 3 7 7 C 1.35079 * 126.61211 * 180.02562 * 6 5 4 8 8 C 1.36622 * 106.79563 * 179.97438 * 7 6 5 9 9 C 1.47509 * 125.76304 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00544 * 353.59530 * 9 8 7 11 11 N 1.34781 * 119.99311 * 173.59503 * 9 8 7 12 12 C 1.46962 * 120.59652 * 4.64587 * 11 9 8 13 13 C 1.53375 * 108.63198 * 235.20503 * 12 11 9 14 14 N 1.46965 * 108.63615 * 310.57250 * 13 12 11 15 15 C 1.36938 * 120.59662 * 235.20353 * 14 13 12 16 16 H 1.08000 * 119.99600 * 148.69431 * 15 14 13 17 17 C 1.38808 * 119.99624 * 328.42354 * 15 14 13 18 18 N 1.31617 * 120.00326 * 350.53435 * 17 15 14 19 19 Si 1.86804 * 119.99475 * 170.52989 * 17 15 14 20 20 H 1.48496 * 109.47274 * 90.00262 * 19 17 15 21 21 H 1.48500 * 109.46926 * 210.00185 * 19 17 15 22 22 H 1.48504 * 109.47280 * 329.99907 * 19 17 15 23 23 C 1.46968 * 118.80728 * 55.48245 * 14 13 12 24 24 C 1.46969 * 120.59040 * 184.62711 * 11 9 8 25 25 N 1.34408 * 108.46474 * 0.26398 * 8 7 6 26 26 N 1.28760 * 109.58200 * 359.54696 * 25 8 7 27 27 C 1.38828 * 119.86918 * 0.25334 * 5 4 3 28 28 C 1.38123 * 119.93284 * 359.51044 * 27 5 4 29 29 H 1.09005 * 109.47470 * 89.98965 * 1 2 3 30 30 H 1.08997 * 109.47413 * 209.99620 * 1 2 3 31 31 H 1.09007 * 109.47077 * 329.99911 * 1 2 3 32 32 H 1.07997 * 119.96805 * 0.02733 * 3 2 1 33 33 H 1.08001 * 120.03539 * 179.97438 * 4 3 2 34 34 H 1.07999 * 126.60283 * 359.97438 * 7 6 5 35 35 H 1.09000 * 109.61042 * 115.46315 * 12 11 9 36 36 H 1.08998 * 109.74880 * 355.02813 * 12 11 9 37 37 H 1.09001 * 109.60562 * 190.83405 * 13 12 11 38 38 H 1.09000 * 109.61083 * 70.31970 * 13 12 11 39 39 H 0.97001 * 119.99735 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.60997 * 64.26609 * 23 14 13 41 41 H 1.08997 * 109.60425 * 184.77424 * 23 14 13 42 42 H 1.09007 * 109.60407 * 244.54056 * 24 11 9 43 43 H 1.09002 * 109.60893 * 5.04533 * 24 11 9 44 44 H 1.07997 * 120.03119 * 179.74864 * 27 5 4 45 45 H 1.08004 * 119.96558 * 180.20843 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5783 1.2015 -0.0005 5 6 4.2737 -0.0001 -0.0005 6 7 5.6760 -0.0001 -0.0016 7 6 6.4816 -1.0843 -0.0022 8 6 7.7669 -0.6212 -0.0038 9 6 8.9837 -1.4550 -0.0044 10 8 8.8940 -2.6617 0.1139 11 7 10.1951 -0.8790 -0.1362 12 6 10.3271 0.5841 -0.1781 13 6 11.0750 0.9721 -1.4598 14 7 12.2876 0.1483 -1.5636 15 6 13.5184 0.7335 -1.6976 16 1 14.3930 0.2515 -1.2863 17 6 13.6425 1.9431 -2.3670 18 7 12.6188 2.4357 -3.0316 19 14 15.2626 2.8721 -2.3244 20 1 16.1117 2.4389 -3.4631 21 1 15.0002 4.3299 -2.4291 22 1 15.9639 2.5859 -1.0470 23 6 12.1549 -1.3149 -1.5274 24 6 11.4077 -1.7029 -0.2402 25 7 7.7352 0.7225 0.0017 26 7 6.5122 1.1254 -0.0029 27 6 3.5782 -1.2016 -0.0053 28 6 2.1969 -1.1983 0.0002 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6555 2.1327 0.0004 33 1 4.1167 2.1377 -0.0010 34 1 6.1697 -2.1183 -0.0016 35 1 10.8892 0.9258 0.6910 36 1 9.3386 1.0433 -0.1782 37 1 11.3511 2.0257 -1.4174 38 1 10.4360 0.7933 -2.3246 39 1 12.7057 3.2808 -3.4996 40 1 11.5911 -1.6528 -2.3969 41 1 13.1444 -1.7720 -1.5297 42 1 12.0466 -1.5240 0.6246 43 1 11.1315 -2.7565 -0.2825 44 1 4.1165 -2.1378 -0.0094 45 1 1.6553 -2.1327 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174349890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 140.640567 kcal Electronic energy + Delta-G solvation = -28783.297860 eV Core-core repulsion = 24804.776899 eV Total energy + Delta-G solvation = -3978.520961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.55537 -39.94261 -39.19031 -36.70287 -35.38635 -33.77996 -32.08811 -31.82619 -31.37444 -30.67305 -29.91186 -27.42974 -26.85388 -24.54148 -23.85354 -23.52133 -22.63948 -22.12332 -21.35463 -20.45310 -19.34472 -18.24215 -16.93925 -16.28748 -16.11787 -15.94039 -15.83936 -15.47035 -15.17035 -14.71084 -14.62508 -14.30377 -14.22330 -14.04689 -13.57215 -13.52087 -13.31469 -13.16892 -12.90863 -12.80825 -12.40278 -12.30177 -12.17647 -11.95715 -11.47985 -11.38997 -11.23084 -10.88227 -10.69493 -10.49386 -10.43072 -10.12378 -9.92442 -9.79830 -9.58267 -9.56058 -9.28181 -8.71119 -8.50725 -8.17134 -6.56895 -5.76205 -3.26932 0.14569 0.79379 1.47222 1.73195 1.76542 3.19175 3.33744 3.38724 3.45077 3.47135 3.53198 4.03026 4.10792 4.30328 4.37487 4.44624 4.50737 4.67393 4.78315 4.84114 4.98221 5.02257 5.11235 5.22384 5.30842 5.41957 5.44392 5.49092 5.60277 5.71709 5.87067 5.95979 5.99073 6.02759 6.12955 6.17270 6.23730 6.43408 6.51643 6.59160 6.76073 6.85288 7.10217 7.37674 7.65687 7.76603 7.81277 8.00568 8.47215 8.49935 9.21912 9.82447 10.41243 11.30265 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002323 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.762367 B =12052.358460 C =13113.425205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.099 4.099 4 C -0.100 4.100 5 C 0.132 3.868 6 N -0.313 5.313 7 C 0.086 3.914 8 C -0.075 4.075 9 C 0.593 3.407 10 O -0.559 6.559 11 N -0.574 5.574 12 C 0.042 3.958 13 C 0.162 3.838 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.904 5.904 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.132 3.868 24 C 0.095 3.905 25 N -0.186 5.186 26 N -0.060 5.060 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.019 0.981 39 H 0.255 0.745 40 H 0.023 0.977 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.913 -5.823 7.321 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.040 3.960 6 N -0.091 5.091 7 C -0.067 4.067 8 C -0.212 4.212 9 C 0.378 3.622 10 O -0.439 6.439 11 N -0.303 5.303 12 C -0.083 4.083 13 C 0.036 3.964 14 N -0.316 5.316 15 C -0.383 4.383 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.549 5.549 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.004 3.996 24 C -0.029 4.029 25 N -0.058 5.058 26 N -0.037 5.037 27 C -0.142 4.142 28 C -0.116 4.116 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.223 0.777 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.121 0.879 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.154 0.846 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.807 -4.742 7.284 26.285 hybrid contribution 0.874 -0.421 -0.153 0.982 sum -23.933 -5.162 7.131 25.501 Atomic orbital electron populations 1.20832 0.90473 1.03225 1.02775 1.20111 0.96735 0.92995 0.98618 1.20998 0.92905 0.98318 0.99572 1.20998 0.94416 0.97036 0.99498 1.17626 0.77559 0.95784 1.05015 1.47628 1.05857 1.06649 1.49003 1.23277 0.89691 0.94800 0.98957 1.21604 0.94691 0.90089 1.14841 1.16778 0.81784 0.85973 0.77666 1.90738 1.86350 1.13452 1.53316 1.47922 1.05219 1.09082 1.68110 1.23739 1.05199 0.77678 1.01685 1.21188 0.86151 0.98298 0.90803 1.44036 1.03741 0.98895 1.84954 1.19191 0.85683 1.04321 1.29111 0.91674 1.25205 0.97384 1.00100 0.96822 1.69946 1.29914 1.20559 1.34440 0.86239 0.83263 0.79036 0.77857 1.21386 1.21554 1.20430 1.21389 0.97841 0.87125 0.93196 1.22390 0.85200 0.94847 1.00497 1.74377 1.10882 1.10395 1.10173 1.82128 0.93679 1.06028 1.21886 1.20960 0.94926 0.96189 1.02087 1.20902 0.92662 0.98325 0.99731 0.90701 0.91184 0.91155 0.84637 0.83877 0.77725 0.92256 0.85332 0.87908 0.96267 0.93497 0.95902 0.91451 0.91620 0.89968 0.84633 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 10.01 36.00 0.36 -0.05 16 2 C -0.08 -0.50 5.88 -104.59 -0.62 -1.12 16 3 C -0.10 -0.67 9.69 -39.61 -0.38 -1.05 16 4 C -0.10 -0.90 9.68 -39.40 -0.38 -1.28 16 5 C 0.13 1.34 6.70 -83.58 -0.56 0.78 16 6 N -0.31 -4.01 3.82 -10.42 -0.04 -4.05 16 7 C 0.09 1.11 10.61 -16.71 -0.18 0.93 16 8 C -0.07 -1.24 6.77 -83.54 -0.57 -1.81 16 9 C 0.59 11.20 7.69 -12.48 -0.10 11.10 16 10 O -0.56 -11.09 16.29 5.29 0.09 -11.00 16 11 N -0.57 -11.45 2.95 -173.45 -0.51 -11.96 16 12 C 0.04 0.86 6.48 -3.60 -0.02 0.84 16 13 C 0.16 4.00 5.46 -3.59 -0.02 3.98 16 14 N -0.59 -15.18 2.96 -171.77 -0.51 -15.68 16 15 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 17 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 18 N -0.90 -26.34 10.96 55.49 0.61 -25.73 16 19 Si 0.91 21.74 29.56 -169.99 -5.03 16.71 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.13 2.87 6.70 -3.37 -0.02 2.84 16 24 C 0.09 1.83 6.60 -3.37 -0.02 1.80 16 25 N -0.19 -3.22 8.63 32.85 0.28 -2.93 16 26 N -0.06 -0.93 13.12 60.35 0.79 -0.13 16 27 C -0.12 -0.92 9.47 -39.41 -0.37 -1.30 16 28 C -0.10 -0.59 9.69 -39.61 -0.38 -0.98 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.19 8.08 -51.93 -0.42 -0.23 16 31 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.14 1.33 7.73 -52.49 -0.41 0.92 16 34 H 0.21 1.92 7.13 -52.49 -0.37 1.55 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.13 2.56 3.59 -132.23 -0.47 2.08 16 37 H 0.10 2.79 5.98 -51.93 -0.31 2.48 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.49 7.01 -51.93 -0.36 1.13 16 44 H 0.14 0.80 6.81 -52.49 -0.36 0.44 16 45 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -33.37 371.03 -8.26 -41.64 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.04 Total: -0.04 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -3.50 Total: 7.59 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.62 Total: -60.49 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.37 -8.26 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174349890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.279 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds