Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38279 * 119.93596 * 2 1 4 4 C 1.38122 * 120.06714 * 180.02562 * 3 2 1 5 5 C 1.38833 * 119.93132 * 359.97438 * 4 3 2 6 6 N 1.40223 * 120.06177 * 179.97438 * 5 4 3 7 7 C 1.35079 * 126.61211 * 180.02562 * 6 5 4 8 8 C 1.36622 * 106.79563 * 179.97438 * 7 6 5 9 9 C 1.47509 * 125.76304 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00544 * 353.59530 * 9 8 7 11 11 N 1.34781 * 119.99311 * 173.59503 * 9 8 7 12 12 C 1.46962 * 120.59652 * 4.64587 * 11 9 8 13 13 C 1.53375 * 108.63198 * 235.20503 * 12 11 9 14 14 N 1.46965 * 108.63615 * 310.57250 * 13 12 11 15 15 C 1.36938 * 120.59662 * 235.20353 * 14 13 12 16 16 H 1.08000 * 119.99600 * 148.69431 * 15 14 13 17 17 C 1.38808 * 119.99624 * 328.42354 * 15 14 13 18 18 N 1.31617 * 120.00326 * 350.53435 * 17 15 14 19 19 Si 1.86804 * 119.99475 * 170.52989 * 17 15 14 20 20 H 1.48496 * 109.47274 * 90.00262 * 19 17 15 21 21 H 1.48500 * 109.46926 * 210.00185 * 19 17 15 22 22 H 1.48504 * 109.47280 * 329.99907 * 19 17 15 23 23 C 1.46968 * 118.80728 * 55.48245 * 14 13 12 24 24 C 1.46969 * 120.59040 * 184.62711 * 11 9 8 25 25 N 1.34408 * 108.46474 * 0.26398 * 8 7 6 26 26 N 1.28760 * 109.58200 * 359.54696 * 25 8 7 27 27 C 1.38828 * 119.86918 * 0.25334 * 5 4 3 28 28 C 1.38123 * 119.93284 * 359.51044 * 27 5 4 29 29 H 1.09005 * 109.47470 * 89.98965 * 1 2 3 30 30 H 1.08997 * 109.47413 * 209.99620 * 1 2 3 31 31 H 1.09007 * 109.47077 * 329.99911 * 1 2 3 32 32 H 1.07997 * 119.96805 * 0.02733 * 3 2 1 33 33 H 1.08001 * 120.03539 * 179.97438 * 4 3 2 34 34 H 1.07999 * 126.60283 * 359.97438 * 7 6 5 35 35 H 1.09000 * 109.61042 * 115.46315 * 12 11 9 36 36 H 1.08998 * 109.74880 * 355.02813 * 12 11 9 37 37 H 1.09001 * 109.60562 * 190.83405 * 13 12 11 38 38 H 1.09000 * 109.61083 * 70.31970 * 13 12 11 39 39 H 0.97001 * 119.99735 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.60997 * 64.26609 * 23 14 13 41 41 H 1.08997 * 109.60425 * 184.77424 * 23 14 13 42 42 H 1.09007 * 109.60407 * 244.54056 * 24 11 9 43 43 H 1.09002 * 109.60893 * 5.04533 * 24 11 9 44 44 H 1.07997 * 120.03119 * 179.74864 * 27 5 4 45 45 H 1.08004 * 119.96558 * 180.20843 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5783 1.2015 -0.0005 5 6 4.2737 -0.0001 -0.0005 6 7 5.6760 -0.0001 -0.0016 7 6 6.4816 -1.0843 -0.0022 8 6 7.7669 -0.6212 -0.0038 9 6 8.9837 -1.4550 -0.0044 10 8 8.8940 -2.6617 0.1139 11 7 10.1951 -0.8790 -0.1362 12 6 10.3271 0.5841 -0.1781 13 6 11.0750 0.9721 -1.4598 14 7 12.2876 0.1483 -1.5636 15 6 13.5184 0.7335 -1.6976 16 1 14.3930 0.2515 -1.2863 17 6 13.6425 1.9431 -2.3670 18 7 12.6188 2.4357 -3.0316 19 14 15.2626 2.8721 -2.3244 20 1 16.1117 2.4389 -3.4631 21 1 15.0002 4.3299 -2.4291 22 1 15.9639 2.5859 -1.0470 23 6 12.1549 -1.3149 -1.5274 24 6 11.4077 -1.7029 -0.2402 25 7 7.7352 0.7225 0.0017 26 7 6.5122 1.1254 -0.0029 27 6 3.5782 -1.2016 -0.0053 28 6 2.1969 -1.1983 0.0002 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6555 2.1327 0.0004 33 1 4.1167 2.1377 -0.0010 34 1 6.1697 -2.1183 -0.0016 35 1 10.8892 0.9258 0.6910 36 1 9.3386 1.0433 -0.1782 37 1 11.3511 2.0257 -1.4174 38 1 10.4360 0.7933 -2.3246 39 1 12.7057 3.2808 -3.4996 40 1 11.5911 -1.6528 -2.3969 41 1 13.1444 -1.7720 -1.5297 42 1 12.0466 -1.5240 0.6246 43 1 11.1315 -2.7565 -0.2825 44 1 4.1165 -2.1378 -0.0094 45 1 1.6553 -2.1327 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174349890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 120.694532 kcal Electronic energy + Delta-G solvation = -28784.162785 eV Core-core repulsion = 24804.776899 eV Total energy + Delta-G solvation = -3979.385886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.66391 -40.94452 -40.33069 -38.43966 -36.29404 -35.55045 -33.35207 -32.84033 -32.36130 -31.98668 -31.47625 -28.83446 -27.91828 -26.02696 -25.00072 -24.70499 -24.11162 -23.35255 -22.13986 -21.89222 -20.68868 -19.59023 -18.49700 -17.60468 -17.41517 -17.30591 -16.74895 -16.45327 -16.41452 -16.13213 -15.97938 -15.42733 -15.25355 -15.13179 -15.02721 -14.78331 -14.70958 -14.55553 -14.02412 -13.65743 -13.51860 -13.49582 -13.29137 -12.97192 -12.77354 -12.63819 -12.48440 -12.37354 -12.23031 -12.06594 -12.02623 -12.00538 -11.71791 -11.49960 -10.91795 -10.69506 -10.57379 -10.11460 -9.85472 -9.40393 -8.60929 -7.85967 -5.41392 -0.67251 0.25265 0.41136 0.68138 0.82966 1.48140 1.49127 1.59002 1.89558 2.11894 2.50608 2.62062 2.93183 3.14815 3.29468 3.55990 3.64615 3.68166 3.82455 3.91197 3.93638 4.08359 4.27102 4.28902 4.32357 4.41624 4.46877 4.49270 4.61941 4.71420 4.76496 4.83274 4.89466 4.99088 5.02240 5.06856 5.11417 5.21874 5.27875 5.41966 5.46695 5.54201 5.55563 5.61637 5.67377 5.87900 6.34054 6.39113 6.67725 7.01367 7.12011 7.78591 8.34124 9.18288 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002323 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.762367 B =12052.358460 C =13113.425205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.104 4.104 4 C -0.112 4.112 5 C 0.090 3.910 6 N -0.297 5.297 7 C 0.108 3.892 8 C -0.107 4.107 9 C 0.598 3.402 10 O -0.568 6.568 11 N -0.585 5.585 12 C 0.060 3.940 13 C 0.174 3.826 14 N -0.611 5.611 15 C -0.264 4.264 16 H 0.072 0.928 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.975 3.025 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.268 1.268 23 C 0.131 3.869 24 C 0.104 3.896 25 N -0.215 5.215 26 N -0.080 5.080 27 C -0.116 4.116 28 C -0.098 4.098 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.130 0.870 34 H 0.244 0.756 35 H 0.058 0.942 36 H 0.142 0.858 37 H 0.074 0.926 38 H -0.011 1.011 39 H 0.251 0.749 40 H 0.011 0.989 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.155 0.845 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.277 -7.476 8.323 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.122 4.122 4 C -0.132 4.132 5 C 0.000 4.000 6 N -0.075 5.075 7 C -0.046 4.046 8 C -0.245 4.245 9 C 0.385 3.615 10 O -0.448 6.448 11 N -0.315 5.315 12 C -0.065 4.065 13 C 0.047 3.953 14 N -0.334 5.334 15 C -0.394 4.394 16 H 0.090 0.910 17 C -0.246 4.246 18 N -0.583 5.583 19 Si 0.802 3.198 20 H -0.211 1.211 21 H -0.219 1.219 22 H -0.192 1.192 23 C 0.005 3.995 24 C -0.019 4.019 25 N -0.087 5.087 26 N -0.058 5.058 27 C -0.137 4.137 28 C -0.116 4.116 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.173 0.827 33 H 0.148 0.852 34 H 0.260 0.740 35 H 0.076 0.924 36 H 0.158 0.842 37 H 0.092 0.908 38 H 0.007 0.993 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.173 0.827 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -27.204 -6.405 8.305 29.156 hybrid contribution 1.309 0.014 -0.479 1.394 sum -25.895 -6.391 7.826 27.797 Atomic orbital electron populations 1.20919 0.88399 1.04385 1.03636 1.20521 0.98247 0.92603 0.96215 1.21262 0.91964 0.99851 0.99171 1.21083 0.95543 0.96450 1.00158 1.18030 0.76096 0.97352 1.08504 1.47764 1.06908 1.05829 1.46966 1.23751 0.88320 0.96134 0.96396 1.21463 0.95158 0.90020 1.17890 1.16965 0.81928 0.86059 0.76593 1.90715 1.86591 1.13803 1.53687 1.47935 1.06018 1.08509 1.69056 1.23438 1.05266 0.78704 0.99080 1.20901 0.85939 0.96791 0.91663 1.44290 1.03391 1.00538 1.85225 1.19555 0.86589 1.04619 1.28620 0.91026 1.26009 1.00650 1.01137 0.96824 1.70130 1.31920 1.20731 1.35531 0.85171 0.79288 0.77191 0.78124 1.21124 1.21938 1.19228 1.21500 0.98861 0.85031 0.94145 1.22263 0.85034 0.95471 0.99169 1.74166 1.12055 1.11081 1.11403 1.82039 0.93457 1.07193 1.23061 1.21268 0.95716 0.95858 1.00818 1.21311 0.92086 0.99668 0.98528 0.89807 0.89790 0.90359 0.82730 0.85173 0.74016 0.92387 0.84171 0.90833 0.99260 0.93988 0.97080 0.90186 0.90797 0.88425 0.82723 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.39 10.01 71.24 0.71 0.32 16 2 C -0.08 -0.66 5.88 -19.85 -0.12 -0.78 16 3 C -0.10 -1.21 9.69 22.25 0.22 -1.00 16 4 C -0.11 -1.98 9.68 22.38 0.22 -1.76 16 5 C 0.09 1.73 6.70 38.08 0.25 1.98 16 6 N -0.30 -7.44 3.82 -186.88 -0.71 -8.16 16 7 C 0.11 2.67 10.61 83.82 0.89 3.56 16 8 C -0.11 -3.54 6.77 40.82 0.28 -3.26 16 9 C 0.60 22.37 7.69 86.69 0.67 23.03 16 10 O -0.57 -21.79 16.29 -4.00 -0.07 -21.86 16 11 N -0.59 -23.48 2.95 -820.92 -2.42 -25.90 16 12 C 0.06 2.57 6.48 86.42 0.56 3.13 16 13 C 0.17 8.98 5.46 86.42 0.47 9.46 16 14 N -0.61 -32.03 2.96 -697.35 -2.06 -34.09 16 15 C -0.26 -14.70 9.58 84.03 0.81 -13.90 16 16 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 17 C -0.05 -2.89 5.08 84.86 0.43 -2.46 16 18 N -0.94 -56.58 10.96 21.65 0.24 -56.35 16 19 Si 0.97 45.39 29.56 68.60 2.03 47.41 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 C 0.13 5.74 6.70 86.56 0.58 6.32 16 24 C 0.10 3.97 6.60 86.56 0.57 4.54 16 25 N -0.22 -7.68 8.63 -49.99 -0.43 -8.11 16 26 N -0.08 -2.56 13.12 37.02 0.49 -2.07 16 27 C -0.12 -1.45 9.47 22.38 0.21 -1.24 16 28 C -0.10 -0.83 9.69 22.25 0.22 -0.61 16 29 H 0.08 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 31 H 0.08 0.18 8.08 -2.38 -0.02 0.16 16 32 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.13 2.54 7.73 -2.91 -0.02 2.52 16 34 H 0.24 3.80 7.13 -2.91 -0.02 3.78 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.14 5.82 3.59 -106.29 -0.38 5.44 16 37 H 0.07 4.23 5.98 -2.39 -0.01 4.21 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.08 3.25 7.93 -2.39 -0.02 3.23 16 42 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 43 H 0.10 3.43 7.01 -2.39 -0.02 3.41 16 44 H 0.16 1.25 6.81 -2.91 -0.02 1.23 16 45 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 Total: -1.00 -74.53 371.03 4.67 -69.86 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.65 Total: 11.91 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 6.96 Total: 27.34 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -4.90 Total: -134.67 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.07 Total: -21.86 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.53 4.67 -69.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174349890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.557 kcal (2) G-P(sol) polarization free energy of solvation -74.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds