Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31469 * 119.93504 * 2 1 4 4 C 1.33405 * 120.85232 * 180.02562 * 3 2 1 5 5 C 1.40740 * 132.50162 * 179.97438 * 4 3 2 6 6 C 1.43197 * 126.52141 * 0.02562 * 5 4 3 7 7 N 5.29837 * 116.87172 * 0.02562 * 2 1 3 8 8 C 1.40565 * 106.95756 * 180.02562 * 5 4 3 9 9 N 1.30781 * 108.75117 * 359.97438 * 8 5 4 10 10 N 1.36721 * 120.77782 * 0.02562 * 4 3 2 11 11 C 1.36376 * 119.71705 * 359.76934 * 10 4 3 12 12 C 1.50701 * 120.42658 * 180.23926 * 11 10 4 13 13 C 1.35721 * 119.14795 * 0.47507 * 11 10 4 14 14 C 1.50699 * 120.31662 * 179.78092 * 13 11 10 15 15 C 1.52995 * 109.47175 * 269.72686 * 14 13 11 16 16 C 1.50697 * 109.47444 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99712 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00212 * 179.97438 * 16 15 14 19 19 C 1.46502 * 119.99847 * 180.02562 * 18 16 15 20 20 H 1.09004 * 109.47136 * 34.99910 * 19 18 16 21 21 C 1.53003 * 109.46937 * 275.00212 * 19 18 16 22 22 C 1.50697 * 109.46937 * 155.00322 * 19 18 16 23 23 H 1.08001 * 120.00040 * 5.46020 * 22 19 18 24 24 C 1.37877 * 120.00057 * 185.46240 * 22 19 18 25 25 N 1.31519 * 119.99869 * 9.55495 * 24 22 19 26 26 Si 1.86794 * 119.99998 * 189.55849 * 24 22 19 27 27 H 1.48504 * 109.47413 * 84.99254 * 26 24 22 28 28 H 1.48504 * 109.47330 * 204.99188 * 26 24 22 29 29 H 1.48498 * 109.47435 * 324.99361 * 26 24 22 30 30 H 1.09007 * 109.46735 * 269.97300 * 1 2 3 31 31 H 1.08997 * 109.47099 * 29.97076 * 1 2 3 32 32 H 1.09001 * 109.47526 * 149.98221 * 1 2 3 33 33 H 1.08005 * 125.62285 * 180.02562 * 8 5 4 34 34 H 1.09005 * 109.46839 * 270.24349 * 12 11 10 35 35 H 1.09003 * 109.47435 * 30.23749 * 12 11 10 36 36 H 1.08999 * 109.47296 * 150.24719 * 12 11 10 37 37 H 1.09000 * 109.47388 * 149.72198 * 14 13 11 38 38 H 1.09000 * 109.46915 * 29.72148 * 14 13 11 39 39 H 1.09000 * 109.47361 * 59.99496 * 15 14 13 40 40 H 1.08999 * 109.47134 * 299.99937 * 15 14 13 41 41 H 0.96992 * 119.99622 * 0.02562 * 18 16 15 42 42 H 1.08996 * 109.46715 * 63.68334 * 21 19 18 43 43 H 1.09005 * 109.46844 * 183.67940 * 21 19 18 44 44 H 1.08996 * 109.47156 * 303.67686 * 21 19 18 45 45 H 0.96999 * 120.00039 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1631 1.1393 0.0000 4 6 3.4970 1.1607 -0.0005 5 6 4.4311 2.2134 -0.0011 6 6 4.1359 3.6146 -0.0008 7 7 3.9019 4.7263 0.0021 8 6 5.7089 1.6276 -0.0021 9 7 5.5750 0.3267 -0.0015 10 7 4.2153 -0.0026 -0.0016 11 6 3.5627 -1.2001 0.0026 12 6 4.3386 -2.4921 0.0070 13 6 2.2056 -1.2134 -0.0020 14 6 1.4577 -2.5217 -0.0025 15 6 1.2035 -2.9634 -1.4451 16 6 0.4562 -4.2720 -1.4456 17 8 0.1568 -4.7997 -0.3955 18 7 0.1206 -4.8559 -2.6131 19 6 -0.6065 -6.1278 -2.6135 20 1 -1.2977 -6.1515 -1.7710 21 6 0.3882 -7.2838 -2.4899 22 6 -1.3783 -6.2647 -3.9005 23 1 -1.2634 -5.5263 -4.6803 24 6 -2.2312 -7.3326 -4.0827 25 7 -2.5167 -8.1257 -3.0732 26 14 -2.9812 -7.6528 -5.7632 27 1 -2.0353 -8.4514 -6.5835 28 1 -4.2528 -8.4031 -5.6030 29 1 -3.2520 -6.3587 -6.4393 30 1 -0.3633 -0.0005 1.0278 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 6.6466 2.1636 -0.0023 34 1 4.5292 -2.8048 -1.0197 35 1 5.2869 -2.3448 0.5238 36 1 3.7609 -3.2611 0.5197 37 1 0.5051 -2.3959 0.5122 38 1 2.0504 -3.2793 0.5103 39 1 2.1561 -3.0892 -1.9597 40 1 0.6109 -2.2059 -1.9579 41 1 0.3604 -4.4340 -3.4528 42 1 0.9001 -7.2214 -1.5296 43 1 -0.1463 -8.2315 -2.5558 44 1 1.1191 -7.2220 -3.2961 45 1 -3.1164 -8.8772 -3.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194714758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = 89.318257 kcal Electronic energy + Delta-G solvation = -28373.412293 eV Core-core repulsion = 24392.665830 eV Total energy + Delta-G solvation = -3980.746463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.00708 -39.64664 -38.79862 -36.61006 -35.86268 -34.96700 -34.16298 -32.46425 -31.54017 -30.61624 -29.31927 -28.81986 -28.07472 -25.37540 -25.12594 -23.14411 -22.69368 -22.00553 -20.92588 -19.51539 -19.27064 -17.97908 -17.52541 -17.08013 -16.76946 -15.85666 -15.46449 -15.30584 -15.01557 -14.49482 -14.34871 -14.14020 -14.01789 -13.96528 -13.68682 -13.37854 -13.30753 -13.21905 -13.05244 -12.74074 -12.61535 -12.45900 -12.36051 -12.26386 -12.05583 -11.87991 -11.63883 -11.25121 -11.11945 -11.06776 -11.01993 -10.83912 -10.45155 -10.34550 -10.23699 -9.78621 -9.21694 -9.12374 -8.58170 -8.33225 -8.04802 -6.22152 -4.27939 -0.08408 0.31700 1.40307 1.70000 2.52873 2.65659 3.19373 3.19608 3.23385 3.27353 3.28179 3.41509 3.44520 3.70771 3.87654 4.11242 4.23992 4.33963 4.39142 4.65842 4.72883 4.81408 4.87234 4.95261 5.02078 5.04014 5.12006 5.18515 5.20668 5.34257 5.39791 5.51152 5.61176 5.66897 5.73662 5.81659 5.94764 6.04435 6.66120 6.78670 6.83819 6.98673 7.12996 7.31675 7.44389 7.49536 7.58966 7.75286 7.98209 8.55383 8.70518 9.00059 9.38419 10.86200 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020902 B = 0.002087 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.257586 B =13412.410079 C =13851.548656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.240 3.760 3 N -0.479 5.479 4 C 0.328 3.672 5 C -0.204 4.204 6 C 0.305 3.695 7 N -0.438 5.438 8 C 0.149 3.851 9 N -0.307 5.307 10 N -0.302 5.302 11 C 0.205 3.795 12 C -0.127 4.127 13 C -0.179 4.179 14 C -0.053 4.053 15 C -0.142 4.142 16 C 0.500 3.500 17 O -0.555 6.555 18 N -0.708 5.708 19 C 0.262 3.738 20 H 0.056 0.944 21 C -0.141 4.141 22 C -0.538 4.538 23 H 0.061 0.939 24 C 0.069 3.931 25 N -0.880 5.880 26 Si 0.898 3.102 27 H -0.278 1.278 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.209 0.791 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.389 0.611 42 H 0.019 0.981 43 H 0.072 0.928 44 H 0.028 0.972 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.609 13.296 5.877 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 N -0.192 5.192 4 C 0.093 3.907 5 C -0.222 4.222 6 C -0.010 4.010 7 N -0.115 5.115 8 C -0.035 4.035 9 N -0.127 5.127 10 N -0.070 5.070 11 C 0.089 3.911 12 C -0.183 4.183 13 C -0.185 4.185 14 C -0.092 4.092 15 C -0.182 4.182 16 C 0.285 3.715 17 O -0.434 6.434 18 N -0.355 5.355 19 C 0.160 3.840 20 H 0.074 0.926 21 C -0.200 4.200 22 C -0.576 4.576 23 H 0.079 0.921 24 C -0.135 4.135 25 N -0.517 5.517 26 Si 0.725 3.275 27 H -0.204 1.204 28 H -0.211 1.211 29 H -0.199 1.199 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.226 0.774 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.221 0.779 42 H 0.039 0.961 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.357 14.225 6.668 20.621 hybrid contribution -0.138 -0.371 -1.435 1.488 sum 13.219 13.854 5.233 19.851 Atomic orbital electron populations 1.21048 0.86234 1.05413 1.04906 1.22063 0.98224 0.86480 0.85197 1.68071 1.03416 1.28800 1.18954 1.20323 0.87969 0.86170 0.96283 1.15003 0.91172 0.85144 1.30905 1.24052 0.93655 0.90824 0.92439 1.81253 1.06750 1.11558 1.11977 1.24036 0.97534 0.90190 0.91758 1.77646 0.89036 1.15158 1.30877 1.46847 1.07475 1.05752 1.46902 1.20697 0.91381 0.86130 0.92867 1.21171 1.00906 0.90890 1.05354 1.20377 0.91173 0.98711 1.08203 1.20322 1.01198 0.90440 0.97249 1.21718 1.01922 0.97093 0.97466 1.20297 0.80330 0.86007 0.84872 1.90677 1.55718 1.65689 1.31345 1.46546 1.56715 1.25454 1.06815 1.18761 0.89331 0.77266 0.98609 0.92616 1.22014 0.98686 1.02228 0.97068 1.21155 1.25769 1.09880 1.00836 0.92101 1.24892 0.95635 0.96052 0.96959 1.69977 1.35007 1.16843 1.29858 0.86528 0.78526 0.78475 0.83961 1.20415 1.21142 1.19904 0.88327 0.89074 0.88470 0.77421 0.88187 0.89026 0.87598 0.88338 0.88748 0.89330 0.89033 0.77900 0.96148 0.90892 0.95291 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.41 36.01 0.34 -0.48 16 2 C 0.24 2.20 6.83 -82.08 -0.56 1.64 16 3 N -0.48 -5.47 10.39 -8.22 -0.09 -5.55 16 4 C 0.33 3.73 7.88 -155.72 -1.23 2.50 16 5 C -0.20 -2.14 6.03 -106.15 -0.64 -2.78 16 6 C 0.31 3.66 15.84 -22.47 -0.36 3.31 16 7 N -0.44 -6.10 18.54 41.84 0.78 -5.33 16 8 C 0.15 1.17 11.93 -17.12 -0.20 0.96 16 9 N -0.31 -2.92 12.41 30.76 0.38 -2.54 16 10 N -0.30 -3.08 3.87 -8.24 -0.03 -3.11 16 11 C 0.21 1.77 6.85 -81.47 -0.56 1.22 16 12 C -0.13 -0.80 9.67 36.01 0.35 -0.45 16 13 C -0.18 -1.51 5.11 -104.86 -0.54 -2.04 16 14 C -0.05 -0.47 3.55 -27.89 -0.10 -0.57 16 15 C -0.14 -1.40 5.56 -27.89 -0.16 -1.56 16 16 C 0.50 8.02 7.79 -10.99 -0.09 7.94 16 17 O -0.55 -11.09 15.65 5.55 0.09 -11.00 16 18 N -0.71 -12.75 5.07 -54.93 -0.28 -13.03 16 19 C 0.26 6.13 2.42 -69.08 -0.17 5.96 16 20 H 0.06 1.54 7.52 -51.93 -0.39 1.15 16 21 C -0.14 -3.20 9.36 37.16 0.35 -2.85 16 22 C -0.54 -13.43 8.66 -34.44 -0.30 -13.73 16 23 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 24 C 0.07 1.77 5.17 -17.82 -0.09 1.68 16 25 N -0.88 -24.00 12.16 55.43 0.67 -23.32 16 26 Si 0.90 19.81 29.55 -169.99 -5.02 14.79 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 30 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.61 5.96 -51.93 -0.31 0.30 16 33 H 0.21 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 36 H 0.11 0.59 5.96 -51.93 -0.31 0.28 16 37 H 0.10 0.88 6.73 -51.93 -0.35 0.54 16 38 H 0.09 0.82 5.91 -51.93 -0.31 0.52 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.77 7.44 -51.93 -0.39 0.39 16 41 H 0.39 5.96 8.53 -40.82 -0.35 5.61 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 1.82 6.83 -51.93 -0.35 1.46 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -33.15 386.97 -7.29 -40.44 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.68 Total: 2.06 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -3.94 Total: 0.76 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 1.44 Total: -52.88 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.15 -7.29 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.763 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds