Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38680 * 120.41865 * 2 1 4 4 C 1.38623 * 118.42154 * 180.24601 * 3 2 1 5 5 C 1.38232 * 119.16024 * 359.75127 * 4 3 2 6 6 N 1.31854 * 120.76404 * 359.97438 * 5 4 3 7 7 C 1.31883 * 121.72639 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.61739 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47098 * 90.00690 * 8 7 6 10 10 C 1.52998 * 109.47426 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.47544 * 179.97438 * 10 9 8 12 12 S 1.65595 * 120.00498 * 164.99742 * 11 10 9 13 13 O 1.42105 * 106.40138 * 311.46357 * 12 11 10 14 14 O 1.42096 * 106.40496 * 178.53663 * 12 11 10 15 15 N 1.65600 * 107.21701 * 64.99908 * 12 11 10 16 16 C 1.46507 * 119.99961 * 270.00026 * 15 12 11 17 17 C 1.46495 * 120.00190 * 90.00283 * 15 12 11 18 18 H 1.09000 * 109.47378 * 359.97438 * 17 15 12 19 19 C 1.53009 * 109.47194 * 240.00150 * 17 15 12 20 20 C 1.50702 * 109.47571 * 120.00081 * 17 15 12 21 21 H 1.08002 * 119.99446 * 359.97438 * 20 17 15 22 22 C 1.37871 * 120.00072 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99826 * 179.72119 * 22 20 17 24 24 Si 1.86800 * 120.00406 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 H 1.09007 * 109.47186 * 270.25025 * 1 2 3 29 29 H 1.09005 * 109.47718 * 30.25004 * 1 2 3 30 30 H 1.09001 * 109.47174 * 150.25451 * 1 2 3 31 31 H 1.07997 * 120.78778 * 359.97040 * 3 2 1 32 32 H 1.08002 * 120.42126 * 179.72951 * 4 3 2 33 33 H 1.08000 * 119.61678 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47704 * 330.00628 * 8 7 6 35 35 H 1.09004 * 109.47531 * 210.00295 * 8 7 6 36 36 H 1.08995 * 109.47314 * 59.99617 * 9 8 7 37 37 H 1.09006 * 109.46879 * 299.99722 * 9 8 7 38 38 H 1.09004 * 109.47210 * 59.99179 * 10 9 8 39 39 H 1.09006 * 109.46700 * 299.99630 * 10 9 8 40 40 H 0.96997 * 119.99355 * 344.99579 * 11 10 9 41 41 H 1.08993 * 109.47215 * 269.99820 * 16 15 12 42 42 H 1.09001 * 109.46606 * 30.00425 * 16 15 12 43 43 H 1.09004 * 109.46774 * 150.00149 * 16 15 12 44 44 H 1.09001 * 109.46592 * 299.99497 * 19 17 15 45 45 H 1.08990 * 109.47127 * 59.99623 * 19 17 15 46 46 H 1.08994 * 109.46846 * 179.97438 * 19 17 15 47 47 H 0.96999 * 120.00128 * 180.27192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5944 1.1476 -0.0052 5 6 4.2255 -0.0823 -0.0050 6 7 3.5254 -1.1996 0.0006 7 6 2.2066 -1.1916 0.0067 8 6 1.4540 -2.4971 0.0124 9 6 1.2058 -2.9364 1.4568 10 6 0.4422 -4.2622 1.4627 11 7 0.2051 -4.6832 2.8457 12 16 -0.9046 -5.8683 3.1719 13 8 -2.0842 -5.5203 2.4601 14 8 -0.8760 -6.0687 4.5784 15 7 -0.3420 -7.2680 2.4887 16 6 -0.7066 -7.6088 1.1112 17 6 0.5200 -8.1655 3.2616 18 1 0.6803 -7.7484 4.2559 19 6 1.8660 -8.3180 2.5501 20 6 -0.1398 -9.5149 3.3829 21 1 -1.1050 -9.6867 2.9298 22 6 0.4883 -10.5299 4.0730 23 7 -0.0901 -11.7059 4.1835 24 14 2.1574 -10.2326 4.8573 25 1 3.2282 -10.5741 3.8867 26 1 2.2759 -8.8033 5.2424 27 1 2.2951 -11.0840 6.0661 28 1 -0.3634 0.0045 1.0277 29 1 -0.3635 0.8877 -0.5177 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6889 2.1423 -0.0005 32 1 4.1734 2.0593 -0.0098 33 1 5.3045 -0.1285 -0.0086 34 1 2.0411 -3.2573 -0.5028 35 1 0.4991 -2.3683 -0.4973 36 1 0.6187 -2.1763 1.9720 37 1 2.1607 -3.0653 1.9666 38 1 1.0298 -5.0222 0.9475 39 1 -0.5126 -4.1338 0.9529 40 1 0.6982 -4.2677 3.5703 41 1 -1.6260 -8.1941 1.1129 42 1 -0.8592 -6.6938 0.5389 43 1 0.0946 -8.1920 0.6571 44 1 1.7060 -8.7349 1.5558 45 1 2.3432 -7.3420 2.4624 46 1 2.5075 -8.9854 3.1255 47 1 0.3500 -12.4187 4.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295266838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = -44.503679 kcal Electronic energy + Delta-G solvation = -27910.903191 eV Core-core repulsion = 24027.504973 eV Total energy + Delta-G solvation = -3883.398217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72722 -36.89583 -36.56175 -36.30415 -35.31042 -34.22174 -33.53804 -32.48475 -30.77248 -30.02724 -27.77343 -26.14056 -25.78098 -24.98854 -23.04545 -22.40973 -21.45959 -20.87275 -18.81735 -17.38758 -17.19617 -17.11090 -16.89672 -16.38354 -15.94086 -15.39043 -15.23326 -15.00623 -14.79986 -14.44587 -13.66611 -13.52970 -13.49900 -13.33174 -13.23097 -13.02003 -12.91578 -12.79187 -12.46621 -12.29209 -12.16721 -12.05038 -11.87961 -11.64065 -11.57715 -11.47400 -11.24339 -11.17609 -11.07237 -10.95689 -10.45915 -10.14460 -10.05779 -9.72872 -9.61066 -9.39584 -9.36957 -9.10679 -8.62342 -8.11201 -6.11200 -4.11605 0.74250 0.92802 1.10993 3.23442 3.33728 3.36644 3.37548 3.46444 3.94527 4.03381 4.29197 4.36049 4.43587 4.53076 4.65022 4.76457 4.83037 4.88569 5.00090 5.05489 5.18524 5.19483 5.25815 5.32955 5.35144 5.42031 5.48060 5.56824 5.67417 5.76018 5.84114 5.87684 6.00334 6.02244 6.08725 6.20165 6.25810 6.33875 6.39458 6.50153 6.58037 6.81555 7.05233 7.30809 7.43192 7.64820 7.69325 8.48536 8.93213 9.48767 11.01815 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.002619 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.309442 B =10690.053466 C =11529.660020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.133 4.133 3 C -0.077 4.077 4 C -0.177 4.177 5 C 0.094 3.906 6 N -0.478 5.478 7 C 0.133 3.867 8 C -0.075 4.075 9 C -0.117 4.117 10 C 0.120 3.880 11 N -1.135 6.135 12 S 2.782 3.218 13 O -0.990 6.990 14 O -0.975 6.975 15 N -0.984 5.984 16 C 0.108 3.892 17 C 0.240 3.760 18 H 0.057 0.943 19 C -0.163 4.163 20 C -0.521 4.521 21 H 0.082 0.918 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.264 1.264 27 H -0.294 1.294 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.412 0.588 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.033 0.967 46 H 0.049 0.951 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 25.588 -10.968 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.196 4.196 5 C -0.063 4.063 6 N -0.186 5.186 7 C -0.005 4.005 8 C -0.113 4.113 9 C -0.156 4.156 10 C -0.006 4.006 11 N -0.894 5.894 12 S 2.790 3.210 13 O -0.974 6.974 14 O -0.959 6.959 15 N -0.826 5.826 16 C -0.038 4.038 17 C 0.135 3.865 18 H 0.074 0.926 19 C -0.221 4.221 20 C -0.561 4.561 21 H 0.100 0.900 22 C -0.129 4.129 23 N -0.532 5.532 24 Si 0.712 3.288 25 H -0.204 1.204 26 H -0.189 1.189 27 H -0.221 1.221 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.245 0.755 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.727 24.620 -10.573 27.399 hybrid contribution 1.291 1.027 0.527 1.732 sum 7.018 25.647 -10.046 28.424 Atomic orbital electron populations 1.20862 0.90071 1.03402 1.03034 1.20773 0.97709 0.93571 1.01458 1.21491 0.94195 0.98088 0.96547 1.22128 0.95308 0.99652 1.02551 1.22749 1.00325 0.87664 0.95558 1.67526 1.07766 1.31508 1.11786 1.21108 0.89651 0.94735 0.94985 1.20578 0.99806 0.93130 0.97827 1.21681 1.01239 0.96667 0.96008 1.21213 1.00575 0.96342 0.82496 1.56217 1.62283 1.57023 1.13856 1.01887 0.73468 0.72452 0.73151 1.93548 1.45046 1.83659 1.75112 1.93611 1.86686 1.85264 1.30308 1.57419 1.65607 1.36229 1.23317 1.21217 1.01442 0.99784 0.81394 1.19078 0.86413 0.90966 0.90034 0.92564 1.22491 0.98652 0.99083 1.01908 1.21161 1.06553 0.93200 1.35153 0.89991 1.24908 0.97644 0.94927 0.95461 1.69875 1.38717 1.02841 1.41796 0.86947 0.84598 0.78629 0.78615 1.20412 1.18928 1.22136 0.90550 0.91377 0.90424 0.84951 0.84914 0.82821 0.89368 0.89393 0.91110 0.90734 0.91496 0.90475 0.75533 0.92726 0.93100 0.90883 0.92154 0.94798 0.93300 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.62 36.00 0.35 -0.35 16 2 C -0.13 -1.06 5.90 -104.48 -0.62 -1.68 16 3 C -0.08 -0.54 9.86 -39.28 -0.39 -0.93 16 4 C -0.18 -1.20 10.11 -39.44 -0.40 -1.60 16 5 C 0.09 0.79 11.18 -17.54 -0.20 0.59 16 6 N -0.48 -5.06 10.27 -9.47 -0.10 -5.16 16 7 C 0.13 1.26 6.03 -82.59 -0.50 0.76 16 8 C -0.07 -0.62 5.11 -27.88 -0.14 -0.76 16 9 C -0.12 -1.05 5.34 -26.73 -0.14 -1.19 16 10 C 0.12 1.29 6.25 -4.04 -0.03 1.26 16 11 N -1.13 -15.10 6.05 -10.61 -0.06 -15.17 16 12 S 2.78 51.45 6.09 -107.50 -0.66 50.80 16 13 O -0.99 -19.56 16.68 -57.17 -0.95 -20.51 16 14 O -0.97 -21.74 16.70 -57.17 -0.95 -22.70 16 15 N -0.98 -19.34 3.12 -115.85 -0.36 -19.70 16 16 C 0.11 1.82 9.53 59.85 0.57 2.39 16 17 C 0.24 5.53 2.21 -69.08 -0.15 5.37 16 18 H 0.06 1.38 5.97 -51.93 -0.31 1.07 16 19 C -0.16 -3.28 8.65 37.16 0.32 -2.96 16 20 C -0.52 -14.38 8.95 -34.44 -0.31 -14.69 16 21 H 0.08 2.45 7.89 -52.49 -0.41 2.04 16 22 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 23 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 24 Si 0.88 21.53 24.37 -169.99 -4.14 17.38 16 25 H -0.28 -6.45 6.88 56.52 0.39 -6.06 16 26 H -0.26 -6.20 6.52 56.52 0.37 -5.83 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 30 H 0.08 0.43 5.96 -51.93 -0.31 0.12 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.58 5.93 -51.93 -0.31 0.27 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.80 7.75 -51.93 -0.40 0.39 16 40 H 0.41 4.79 8.65 -34.47 -0.30 4.50 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 43 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 44 H 0.06 1.15 6.66 -51.93 -0.35 0.80 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 1.05 3.28 -51.93 -0.17 0.88 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -35.64 385.83 -9.49 -45.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.13 Total: 2.14 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.73 Total: -11.78 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.25 Total: -66.29 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.91 Total: -43.21 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.38 kcal Atomic # 16 Polarization: 51.45 SS G_CDS: -0.66 Total: 50.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.64 -9.49 -45.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295266838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.632 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds