Wall clock time and date at job start Sat Apr 11 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38680 * 120.41865 * 2 1 4 4 C 1.38623 * 118.42154 * 180.24601 * 3 2 1 5 5 C 1.38232 * 119.16024 * 359.75127 * 4 3 2 6 6 N 1.31854 * 120.76404 * 359.97438 * 5 4 3 7 7 C 1.31883 * 121.72639 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.61739 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47098 * 90.00690 * 8 7 6 10 10 C 1.52998 * 109.47426 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.47544 * 179.97438 * 10 9 8 12 12 S 1.65595 * 120.00498 * 164.99742 * 11 10 9 13 13 O 1.42105 * 106.40138 * 311.46357 * 12 11 10 14 14 O 1.42096 * 106.40496 * 178.53663 * 12 11 10 15 15 N 1.65600 * 107.21701 * 64.99908 * 12 11 10 16 16 C 1.46507 * 119.99961 * 270.00026 * 15 12 11 17 17 C 1.46495 * 120.00190 * 90.00283 * 15 12 11 18 18 H 1.09000 * 109.47378 * 359.97438 * 17 15 12 19 19 C 1.53009 * 109.47194 * 240.00150 * 17 15 12 20 20 C 1.50702 * 109.47571 * 120.00081 * 17 15 12 21 21 H 1.08002 * 119.99446 * 359.97438 * 20 17 15 22 22 C 1.37871 * 120.00072 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99826 * 179.72119 * 22 20 17 24 24 Si 1.86800 * 120.00406 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 H 1.09007 * 109.47186 * 270.25025 * 1 2 3 29 29 H 1.09005 * 109.47718 * 30.25004 * 1 2 3 30 30 H 1.09001 * 109.47174 * 150.25451 * 1 2 3 31 31 H 1.07997 * 120.78778 * 359.97040 * 3 2 1 32 32 H 1.08002 * 120.42126 * 179.72951 * 4 3 2 33 33 H 1.08000 * 119.61678 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47704 * 330.00628 * 8 7 6 35 35 H 1.09004 * 109.47531 * 210.00295 * 8 7 6 36 36 H 1.08995 * 109.47314 * 59.99617 * 9 8 7 37 37 H 1.09006 * 109.46879 * 299.99722 * 9 8 7 38 38 H 1.09004 * 109.47210 * 59.99179 * 10 9 8 39 39 H 1.09006 * 109.46700 * 299.99630 * 10 9 8 40 40 H 0.96997 * 119.99355 * 344.99579 * 11 10 9 41 41 H 1.08993 * 109.47215 * 269.99820 * 16 15 12 42 42 H 1.09001 * 109.46606 * 30.00425 * 16 15 12 43 43 H 1.09004 * 109.46774 * 150.00149 * 16 15 12 44 44 H 1.09001 * 109.46592 * 299.99497 * 19 17 15 45 45 H 1.08990 * 109.47127 * 59.99623 * 19 17 15 46 46 H 1.08994 * 109.46846 * 179.97438 * 19 17 15 47 47 H 0.96999 * 120.00128 * 180.27192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5944 1.1476 -0.0052 5 6 4.2255 -0.0823 -0.0050 6 7 3.5254 -1.1996 0.0006 7 6 2.2066 -1.1916 0.0067 8 6 1.4540 -2.4971 0.0124 9 6 1.2058 -2.9364 1.4568 10 6 0.4422 -4.2622 1.4627 11 7 0.2051 -4.6832 2.8457 12 16 -0.9046 -5.8683 3.1719 13 8 -2.0842 -5.5203 2.4601 14 8 -0.8760 -6.0687 4.5784 15 7 -0.3420 -7.2680 2.4887 16 6 -0.7066 -7.6088 1.1112 17 6 0.5200 -8.1655 3.2616 18 1 0.6803 -7.7484 4.2559 19 6 1.8660 -8.3180 2.5501 20 6 -0.1398 -9.5149 3.3829 21 1 -1.1050 -9.6867 2.9298 22 6 0.4883 -10.5299 4.0730 23 7 -0.0901 -11.7059 4.1835 24 14 2.1574 -10.2326 4.8573 25 1 3.2282 -10.5741 3.8867 26 1 2.2759 -8.8033 5.2424 27 1 2.2951 -11.0840 6.0661 28 1 -0.3634 0.0045 1.0277 29 1 -0.3635 0.8877 -0.5177 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6889 2.1423 -0.0005 32 1 4.1734 2.0593 -0.0098 33 1 5.3045 -0.1285 -0.0086 34 1 2.0411 -3.2573 -0.5028 35 1 0.4991 -2.3683 -0.4973 36 1 0.6187 -2.1763 1.9720 37 1 2.1607 -3.0653 1.9666 38 1 1.0298 -5.0222 0.9475 39 1 -0.5126 -4.1338 0.9529 40 1 0.6982 -4.2677 3.5703 41 1 -1.6260 -8.1941 1.1129 42 1 -0.8592 -6.6938 0.5389 43 1 0.0946 -8.1920 0.6571 44 1 1.7060 -8.7349 1.5558 45 1 2.3432 -7.3420 2.4624 46 1 2.5075 -8.9854 3.1255 47 1 0.3500 -12.4187 4.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295266838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:02 Heat of formation + Delta-G solvation = -71.620989 kcal Electronic energy + Delta-G solvation = -27912.079086 eV Core-core repulsion = 24027.504973 eV Total energy + Delta-G solvation = -3884.574112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.27726 -38.39603 -38.08840 -37.38244 -36.89832 -34.89259 -34.52109 -34.15952 -31.77609 -31.47630 -28.30238 -27.33168 -26.98149 -26.76400 -23.69544 -23.04931 -22.68246 -22.01941 -20.22725 -18.98134 -18.77411 -18.14202 -17.75521 -17.61051 -17.21841 -16.70149 -16.08644 -16.03191 -15.64026 -15.39687 -15.20724 -15.01675 -14.52018 -14.18725 -14.12642 -14.02781 -13.89163 -13.81136 -13.62224 -13.57838 -13.45865 -13.25252 -13.16114 -13.10368 -12.90910 -12.78290 -12.63409 -12.50978 -12.13264 -12.03955 -11.99045 -11.61970 -11.44840 -11.30124 -10.75585 -10.60659 -10.44291 -10.30796 -9.75795 -9.64894 -8.29062 -6.33829 -0.36469 0.20181 0.39315 1.30880 1.39764 1.47768 2.01115 2.32559 2.62004 2.85910 3.05820 3.34516 3.45939 3.75711 3.94110 3.98554 4.00992 4.11003 4.17543 4.18893 4.25356 4.46730 4.55595 4.62123 4.64998 4.67370 4.71167 4.73223 4.80515 4.81363 4.84324 4.91417 4.97821 5.01984 5.14200 5.15319 5.22231 5.24190 5.32628 5.38961 5.44963 5.50698 5.62380 5.83573 5.88082 6.14332 6.35712 6.70843 7.11926 7.30774 8.87716 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.002619 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.309442 B =10690.053466 C =11529.660020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.141 4.141 3 C -0.085 4.085 4 C -0.174 4.174 5 C 0.075 3.925 6 N -0.510 5.510 7 C 0.111 3.889 8 C -0.072 4.072 9 C -0.106 4.106 10 C 0.112 3.888 11 N -1.117 6.117 12 S 2.798 3.202 13 O -1.005 7.005 14 O -1.018 7.018 15 N -0.992 5.992 16 C 0.101 3.899 17 C 0.241 3.759 18 H 0.044 0.956 19 C -0.157 4.157 20 C -0.525 4.525 21 H 0.040 0.960 22 C 0.014 3.986 23 N -0.945 5.945 24 Si 0.941 3.059 25 H -0.253 1.253 26 H -0.248 1.248 27 H -0.300 1.300 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.422 0.578 41 H 0.032 0.968 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.039 0.961 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 28.541 -12.053 32.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.143 4.143 3 C -0.110 4.110 4 C -0.193 4.193 5 C -0.082 4.082 6 N -0.219 5.219 7 C -0.027 4.027 8 C -0.110 4.110 9 C -0.145 4.145 10 C -0.014 4.014 11 N -0.881 5.881 12 S 2.807 3.193 13 O -0.988 6.988 14 O -1.002 7.002 15 N -0.833 5.833 16 C -0.044 4.044 17 C 0.135 3.865 18 H 0.062 0.938 19 C -0.216 4.216 20 C -0.564 4.564 21 H 0.059 0.941 22 C -0.184 4.184 23 N -0.585 5.585 24 Si 0.767 3.233 25 H -0.179 1.179 26 H -0.172 1.172 27 H -0.228 1.228 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.187 0.813 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.258 0.742 41 H 0.050 0.950 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.524 27.594 -11.682 30.895 hybrid contribution 0.634 0.225 0.786 1.035 sum 8.158 27.819 -10.897 30.971 Atomic orbital electron populations 1.20907 0.88814 1.04261 1.03362 1.21033 0.98739 0.93511 1.00976 1.21875 0.94510 0.98839 0.95825 1.22442 0.95644 1.00106 1.01154 1.23132 1.01241 0.87937 0.95893 1.67488 1.08600 1.32855 1.12970 1.21302 0.89640 0.95616 0.96099 1.20562 1.00464 0.92766 0.97209 1.21565 1.00552 0.95740 0.96672 1.21514 1.01542 0.97593 0.80711 1.55734 1.61459 1.55235 1.15643 1.01181 0.73662 0.72642 0.71835 1.93525 1.46349 1.83852 1.75103 1.93548 1.87434 1.86071 1.33106 1.57364 1.65350 1.36525 1.24021 1.21407 1.00763 1.01662 0.80577 1.18839 0.88138 0.88771 0.90702 0.93832 1.22365 0.96459 1.01132 1.01633 1.21470 1.05230 0.95675 1.34072 0.94138 1.25789 1.01873 0.94540 0.96193 1.70034 1.40887 1.04112 1.43503 0.85986 0.80262 0.79232 0.77773 1.17862 1.17157 1.22831 0.90372 0.90050 0.90103 0.82608 0.82327 0.81348 0.89825 0.87800 0.90607 0.91482 0.90299 0.89726 0.74231 0.94953 0.89250 0.89905 0.91249 0.90989 0.94234 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.62 71.23 0.69 -0.41 16 2 C -0.14 -1.95 5.90 -19.77 -0.12 -2.07 16 3 C -0.08 -0.97 9.86 22.47 0.22 -0.75 16 4 C -0.17 -1.98 10.11 22.36 0.23 -1.75 16 5 C 0.07 1.14 11.18 84.69 0.95 2.09 16 6 N -0.51 -10.24 10.27 -183.89 -1.89 -12.13 16 7 C 0.11 1.92 6.03 42.54 0.26 2.18 16 8 C -0.07 -1.03 5.11 29.85 0.15 -0.88 16 9 C -0.11 -1.64 5.34 30.59 0.16 -1.48 16 10 C 0.11 2.06 6.25 86.38 0.54 2.60 16 11 N -1.12 -27.13 6.05 -187.49 -1.14 -28.27 16 12 S 2.80 100.61 6.09 -56.49 -0.34 100.27 16 13 O -1.01 -38.60 16.68 -128.00 -2.14 -40.74 16 14 O -1.02 -45.33 16.70 -128.00 -2.14 -47.47 16 15 N -0.99 -38.04 3.12 -520.42 -1.62 -39.67 16 16 C 0.10 3.30 9.53 127.77 1.22 4.52 16 17 C 0.24 10.92 2.21 44.25 0.10 11.02 16 18 H 0.04 2.10 5.97 -2.39 -0.01 2.08 16 19 C -0.16 -5.90 8.65 71.99 0.62 -5.28 16 20 C -0.53 -29.60 8.95 25.60 0.23 -29.37 16 21 H 0.04 2.54 7.89 -2.91 -0.02 2.52 16 22 C 0.01 0.81 5.45 84.65 0.46 1.27 16 23 N -0.95 -58.97 13.96 21.45 0.30 -58.68 16 24 Si 0.94 43.98 24.37 68.60 1.67 45.66 16 25 H -0.25 -10.80 6.88 99.48 0.68 -10.12 16 26 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.08 0.54 8.10 -2.38 -0.02 0.52 16 30 H 0.08 0.69 5.96 -2.39 -0.01 0.68 16 31 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 33 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.11 5.93 -2.39 -0.01 1.09 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.48 7.75 -2.38 -0.02 1.46 16 40 H 0.42 8.85 8.65 -96.75 -0.84 8.01 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 2.19 7.79 -2.39 -0.02 2.17 16 43 H 0.08 2.51 6.43 -2.38 -0.02 2.50 16 44 H 0.07 2.45 6.66 -2.39 -0.02 2.44 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.04 1.56 3.28 -2.39 -0.01 1.55 16 47 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -79.51 385.83 -1.53 -81.04 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.06 Total: 18.30 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 5.70 Total: -18.31 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -4.35 Total: -138.74 kcal Atomic # 8 Polarization: -83.93 SS G_CDS: -4.27 Total: -88.21 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.67 Total: 45.66 kcal Atomic # 16 Polarization: 100.61 SS G_CDS: -0.34 Total: 100.27 kcal Total: -79.51 -1.53 -81.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295266838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.415 kcal (2) G-P(sol) polarization free energy of solvation -79.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds