Wall clock time and date at job start Sat Apr 11 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35312 * 126.13243 * 2 1 4 4 C 1.39871 * 107.92307 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.89695 * 179.97438 * 4 3 2 6 6 C 1.53044 * 109.45870 * 85.00228 * 5 4 3 7 7 C 1.53191 * 109.31440 * 178.61110 * 6 5 4 8 8 N 1.46926 * 108.89109 * 54.56430 * 7 6 5 9 9 S 1.65602 * 120.63116 * 126.46643 * 8 7 6 10 10 O 1.42094 * 104.28022 * 206.07250 * 9 8 7 11 11 O 1.42101 * 104.27558 * 333.92968 * 9 8 7 12 12 C 1.81399 * 104.44897 * 89.99836 * 9 8 7 13 13 C 1.53000 * 109.47282 * 180.02562 * 12 9 8 14 14 C 1.52991 * 109.47416 * 179.97438 * 13 12 9 15 15 C 1.50706 * 109.47494 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99680 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00197 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00097 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46854 * 90.00091 * 19 17 15 21 21 H 1.48491 * 109.47071 * 210.00017 * 19 17 15 22 22 H 1.48496 * 109.47105 * 330.00354 * 19 17 15 23 23 C 1.46957 * 118.71783 * 306.64359 * 8 7 6 24 24 C 1.53040 * 109.46186 * 324.93557 * 5 4 3 25 25 N 1.30832 * 108.19975 * 0.26555 * 4 3 2 26 26 N 1.34953 * 126.12443 * 180.02562 * 2 1 3 27 27 H 0.97002 * 126.03821 * 359.96804 * 26 2 1 28 28 H 1.09002 * 109.46841 * 90.00129 * 1 2 3 29 29 H 1.08998 * 109.47213 * 209.99727 * 1 2 3 30 30 H 1.08996 * 109.46588 * 330.00502 * 1 2 3 31 31 H 1.08005 * 126.03748 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.46022 * 204.97445 * 5 4 3 33 33 H 1.09003 * 109.49852 * 58.66374 * 6 5 4 34 34 H 1.09001 * 109.52587 * 298.58336 * 6 5 4 35 35 H 1.09002 * 109.58786 * 174.42474 * 7 6 5 36 36 H 1.08996 * 109.58870 * 294.70753 * 7 6 5 37 37 H 1.08996 * 109.47438 * 300.00379 * 12 9 8 38 38 H 1.08998 * 109.46957 * 60.00644 * 12 9 8 39 39 H 1.09004 * 109.47140 * 300.00847 * 13 12 9 40 40 H 1.09009 * 109.46881 * 59.99999 * 13 12 9 41 41 H 1.08996 * 109.47373 * 300.00398 * 14 13 12 42 42 H 1.09000 * 109.47289 * 60.00235 * 14 13 12 43 43 H 0.96996 * 119.99609 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.46843 * 293.57352 * 23 8 7 45 45 H 1.08997 * 109.71602 * 173.28846 * 23 8 7 46 46 H 1.08995 * 109.49643 * 301.33482 * 24 5 4 47 47 H 1.08994 * 109.49843 * 61.40241 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6336 0.6558 -0.0006 5 6 4.8544 1.5393 -0.0013 6 6 5.1944 1.9403 1.4360 7 6 6.4557 2.8096 1.4345 8 7 6.2503 3.9444 0.5242 9 16 6.4849 5.4983 1.0465 10 8 5.6495 6.2809 0.2046 11 8 6.2590 5.4348 2.4480 12 6 8.2332 5.8339 0.6981 13 6 8.5777 7.2570 1.1419 14 6 10.0524 7.5398 0.8487 15 6 10.3919 8.9413 1.2865 16 1 9.6317 9.5678 1.7291 17 6 11.6727 9.4241 1.1209 18 7 12.5983 8.6613 0.5813 19 14 12.0933 11.1616 1.6628 20 1 12.5496 11.1425 3.0758 21 1 13.1752 11.7008 0.8005 22 1 10.8893 12.0226 1.5431 23 6 5.8289 3.6740 -0.8575 24 6 4.5746 2.7949 -0.8304 25 7 3.6333 -0.6525 -0.0067 26 7 2.3026 -1.0901 -0.0005 27 1 2.0055 -2.0135 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.9742 2.1210 0.0004 32 1 5.6945 0.9974 -0.4356 33 1 5.3707 1.0445 2.0315 34 1 4.3647 2.5036 1.8630 35 1 6.6459 3.1792 2.4422 36 1 7.3065 2.2186 1.0955 37 1 8.8551 5.1233 1.2425 38 1 8.4165 5.7321 -0.3715 39 1 7.9558 7.9678 0.5979 40 1 8.3944 7.3583 2.2117 41 1 10.6739 6.8289 1.3931 42 1 10.2361 7.4383 -0.2209 43 1 13.4993 9.0012 0.4645 44 1 6.6281 3.1541 -1.3859 45 1 5.6062 4.6129 -1.3644 46 1 4.3097 2.5075 -1.8478 47 1 3.7503 3.3501 -0.3829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330836465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:18 Heat of formation + Delta-G solvation = -24.052053 kcal Electronic energy + Delta-G solvation = -27342.116854 eV Core-core repulsion = 23459.605486 eV Total energy + Delta-G solvation = -3882.511368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62682 -38.65931 -36.93213 -35.70730 -34.63864 -34.09883 -32.33508 -32.16260 -31.26108 -30.45611 -27.77583 -27.41706 -25.20335 -23.64238 -23.55127 -21.36739 -20.87665 -20.51855 -19.69397 -18.59894 -17.73001 -17.39694 -16.59366 -16.11621 -15.72129 -15.35507 -14.93392 -14.91338 -14.53222 -14.43774 -14.16836 -14.05995 -13.92854 -13.82205 -13.32856 -13.16816 -12.72541 -12.57732 -12.55770 -12.25898 -12.02786 -11.91947 -11.78116 -11.74405 -11.43641 -11.32755 -11.22380 -11.00442 -10.90903 -10.82880 -10.81357 -10.60611 -10.38419 -9.93043 -9.53946 -9.48497 -9.21041 -8.90757 -8.89324 -8.39359 -6.04275 -4.07276 0.47099 1.53785 2.46481 2.51700 2.77397 3.31584 3.37636 3.41772 4.03563 4.15999 4.28517 4.32788 4.43078 4.46840 4.64093 4.73009 4.88617 4.95850 4.98204 5.04421 5.17832 5.19712 5.24058 5.26112 5.32234 5.34322 5.43082 5.48589 5.57822 5.61847 5.63143 5.76721 5.81648 5.92387 5.93150 6.07529 6.18115 6.28273 6.35998 6.47798 6.55017 6.89493 6.95535 7.40331 7.58784 7.68824 7.93854 8.34432 8.98989 9.57363 11.06906 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.001942 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.473713 B =14414.490655 C =14634.107398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.083 3.917 3 C -0.264 4.264 4 C 0.091 3.909 5 C -0.006 4.006 6 C -0.118 4.118 7 C 0.118 3.882 8 N -1.005 6.005 9 S 2.598 3.402 10 O -0.960 6.960 11 O -0.960 6.960 12 C -0.609 4.609 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.118 3.882 24 C -0.120 4.120 25 N -0.295 5.295 26 N -0.480 5.480 27 H 0.435 0.565 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.162 -21.193 -3.179 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.045 4.045 3 C -0.294 4.294 4 C -0.076 4.076 5 C -0.027 4.027 6 C -0.158 4.158 7 C -0.007 4.007 8 N -0.842 5.842 9 S 2.695 3.305 10 O -0.950 6.950 11 O -0.950 6.950 12 C -0.741 4.741 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.008 4.008 24 C -0.159 4.159 25 N -0.117 5.117 26 N -0.188 5.188 27 H 0.279 0.721 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.165 0.835 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.953 -21.704 -2.854 31.003 hybrid contribution 0.284 0.746 -0.028 0.799 sum -21.670 -20.958 -2.882 30.284 Atomic orbital electron populations 1.20465 0.87280 1.03994 1.03450 1.21136 0.94601 0.87828 1.00981 1.21176 0.91722 0.99249 1.17212 1.22281 0.95668 0.91269 0.98353 1.19534 0.92793 0.93333 0.97019 1.21852 0.98653 0.99907 0.95396 1.21438 0.97418 0.87597 0.94249 1.57874 1.83362 1.23421 1.19511 1.05428 0.78297 0.72536 0.74205 1.93548 1.64427 1.68217 1.68844 1.93552 1.85225 1.85147 1.31121 1.30600 1.23108 1.08869 1.11480 1.21499 1.03455 0.88847 1.00744 1.19063 0.87484 0.96870 0.97380 1.21261 0.95601 0.98865 1.40710 0.92371 1.25022 0.96440 0.97789 0.95155 1.69959 1.02830 1.36460 1.44162 0.86552 0.78153 0.84536 0.78548 1.20580 1.21185 1.19751 1.21448 0.96270 1.01202 0.81854 1.21874 0.98514 0.95146 1.00414 1.77304 0.96167 1.12628 1.25598 1.46285 1.04120 1.08122 1.60279 0.72108 0.90111 0.91164 0.89432 0.83502 0.89393 0.90593 0.90864 0.88428 0.91162 0.85486 0.85477 0.91632 0.91642 0.96129 0.96117 0.92918 0.91216 0.88356 0.90459 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.43 36.01 0.38 0.03 16 2 C 0.08 0.61 7.21 -82.26 -0.59 0.02 16 3 C -0.26 -2.38 9.89 -40.01 -0.40 -2.77 16 4 C 0.09 0.92 6.13 -82.41 -0.50 0.41 16 5 C -0.01 -0.06 2.61 -91.73 -0.24 -0.30 16 6 C -0.12 -1.10 5.34 -26.61 -0.14 -1.24 16 7 C 0.12 1.16 6.43 -3.71 -0.02 1.13 16 8 N -1.00 -11.24 3.23 -113.50 -0.37 -11.61 16 9 S 2.60 38.29 5.45 -107.50 -0.59 37.71 16 10 O -0.96 -16.51 16.59 -57.54 -0.95 -17.46 16 11 O -0.96 -16.66 16.59 -57.54 -0.95 -17.62 16 12 C -0.61 -9.40 6.18 37.16 0.23 -9.17 16 13 C -0.11 -2.16 5.16 -26.74 -0.14 -2.30 16 14 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 15 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.12 1.11 6.42 -3.69 -0.02 1.09 16 24 C -0.12 -1.04 4.93 -26.61 -0.13 -1.17 16 25 N -0.29 -3.18 12.70 33.67 0.43 -2.75 16 26 N -0.48 -3.78 7.36 33.48 0.25 -3.54 16 27 H 0.44 2.08 8.96 -182.61 -1.64 0.44 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.15 1.17 7.47 -52.48 -0.39 0.78 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.01 6.86 -51.93 -0.36 0.65 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16 38 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.97 6.87 -51.93 -0.36 0.62 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.69 7.38 -51.93 -0.38 0.31 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -36.64 392.05 -11.71 -48.35 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -9.01 Total: -2.42 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -2.14 Total: -27.30 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 1.04 Total: -43.80 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.91 Total: -35.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 38.29 SS G_CDS: -0.59 Total: 37.71 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.64 -11.71 -48.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330836465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.297 kcal (2) G-P(sol) polarization free energy of solvation -36.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds