Wall clock time and date at job start Sat Apr 11 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37748 * 120.03703 * 2 1 4 4 C 1.39027 * 120.07840 * 180.02562 * 3 2 1 5 5 N 1.39865 * 119.92400 * 179.69865 * 4 3 2 6 6 C 1.34811 * 126.84794 * 179.71018 * 5 4 3 7 7 N 1.30816 * 108.01818 * 179.83413 * 6 5 4 8 8 C 1.33291 * 109.84837 * 0.44423 * 7 6 5 9 9 N 1.30723 * 109.01527 * 359.72679 * 8 7 6 10 10 C 1.39071 * 120.15854 * 359.97386 * 4 3 2 11 11 C 1.37717 * 120.07328 * 0.02562 * 10 4 3 12 12 C 1.39679 * 120.04094 * 180.02562 * 2 1 3 13 13 C 1.47670 * 120.07788 * 359.95975 * 12 2 1 14 14 O 1.21575 * 119.99993 * 45.46908 * 13 12 2 15 15 N 1.34782 * 120.00152 * 225.46889 * 13 12 2 16 16 C 1.46957 * 120.59333 * 4.72714 * 15 13 12 17 17 C 1.53814 * 108.39687 * 124.75830 * 16 15 13 18 18 N 1.46962 * 108.58130 * 49.64136 * 17 16 15 19 19 C 1.36932 * 120.59498 * 124.62238 * 18 17 16 20 20 H 1.08003 * 119.99831 * 191.98590 * 19 18 17 21 21 C 1.38803 * 120.00133 * 11.98341 * 19 18 17 22 22 N 1.31621 * 120.00515 * 224.64314 * 21 19 18 23 23 Si 1.86803 * 120.00021 * 44.64914 * 21 19 18 24 24 H 1.48498 * 109.47722 * 95.97858 * 23 21 19 25 25 H 1.48504 * 109.47278 * 215.98185 * 23 21 19 26 26 H 1.48498 * 109.46959 * 335.98007 * 23 21 19 27 27 C 1.46973 * 118.80902 * 304.64615 * 18 17 16 28 28 C 1.46966 * 120.59449 * 185.00867 * 15 13 12 29 29 H 1.08999 * 109.46740 * 86.50886 * 1 2 3 30 30 H 1.09002 * 109.46794 * 206.50845 * 1 2 3 31 31 H 1.08996 * 109.47456 * 326.51341 * 1 2 3 32 32 H 1.07997 * 119.96445 * 0.02562 * 3 2 1 33 33 H 1.07999 * 125.98652 * 359.96681 * 6 5 4 34 34 H 1.07999 * 125.49205 * 179.72405 * 8 7 6 35 35 H 1.07992 * 119.96315 * 180.02562 * 10 4 3 36 36 H 1.08001 * 120.03295 * 180.02562 * 11 10 4 37 37 H 1.08997 * 109.61418 * 244.54238 * 16 15 13 38 38 H 1.09002 * 109.60895 * 5.05355 * 16 15 13 39 39 H 1.09004 * 109.74290 * 289.84528 * 17 16 15 40 40 H 1.09003 * 109.53400 * 169.30529 * 17 16 15 41 41 H 0.97000 * 120.00282 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.60871 * 295.48618 * 27 18 17 43 43 H 1.08997 * 109.60577 * 174.97050 * 27 18 17 44 44 H 1.09003 * 109.61037 * 354.94943 * 28 15 13 45 45 H 1.09002 * 109.60595 * 115.45814 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1925 0.0000 4 6 3.5868 1.1935 -0.0005 5 7 4.2836 2.4062 -0.0069 6 6 5.6218 2.5697 -0.0028 7 7 5.8726 3.8535 -0.0151 8 6 4.7289 4.5381 -0.0175 9 7 3.7287 3.6964 -0.0126 10 6 4.2863 -0.0085 -0.0005 11 6 3.6034 -1.2044 -0.0005 12 6 2.2063 -1.2092 -0.0005 13 6 1.4706 -2.4895 -0.0002 14 8 0.5271 -2.6487 -0.7502 15 7 1.8451 -3.4818 0.8315 16 6 2.9160 -3.2690 1.8151 17 6 2.3690 -3.6142 3.2107 18 7 1.7180 -4.9302 3.1461 19 6 2.0991 -5.9385 3.9905 20 1 1.7599 -6.9484 3.8134 21 6 2.9215 -5.6626 5.0741 22 7 3.9398 -6.4514 5.3453 23 14 2.5832 -4.1720 6.1479 24 1 1.7906 -4.5855 7.3336 25 1 3.8703 -3.5811 6.5945 26 1 1.8197 -3.1641 5.3692 27 6 0.6508 -5.1447 2.1586 28 6 1.1940 -4.7978 0.7669 29 1 -0.3633 0.0626 -1.0258 30 1 -0.3633 -0.9197 0.4587 31 1 -0.3634 0.8570 0.5670 32 1 1.6566 2.1278 0.0004 33 1 6.3577 1.7793 0.0066 34 1 4.6425 5.6146 -0.0226 35 1 5.3663 -0.0040 -0.0005 36 1 4.1474 -2.1374 -0.0001 37 1 3.7618 -3.9153 1.5807 38 1 3.2320 -2.2261 1.7921 39 1 1.6430 -2.8615 3.5181 40 1 3.1906 -3.6473 3.9262 41 1 4.5142 -6.2588 6.1027 42 1 -0.1975 -4.5009 2.3911 43 1 0.3377 -6.1885 2.1794 44 1 0.3724 -4.7647 0.0513 45 1 1.9200 -5.5504 0.4595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332452532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:24 Heat of formation + Delta-G solvation = 122.584538 kcal Electronic energy + Delta-G solvation = -29580.328355 eV Core-core repulsion = 25601.024427 eV Total energy + Delta-G solvation = -3979.303929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.38998 -41.74300 -39.90808 -38.56537 -35.76936 -35.56957 -33.92289 -33.35345 -32.47060 -32.21537 -30.92889 -29.05310 -28.10915 -26.04110 -25.01536 -24.94579 -23.91124 -23.04613 -22.28050 -21.72574 -20.41138 -19.11583 -19.05968 -17.97337 -17.55755 -17.00629 -16.89515 -16.80044 -16.43148 -16.01530 -15.84937 -15.64483 -15.42793 -15.14874 -14.90090 -14.81227 -14.65348 -14.27863 -14.16011 -14.04475 -13.78955 -13.59509 -13.39821 -13.36656 -12.95519 -12.82390 -12.55144 -12.27839 -12.17740 -12.09753 -11.97093 -11.71733 -11.33956 -11.24591 -11.00846 -10.91857 -10.65283 -9.99858 -9.90809 -9.49094 -9.05296 -8.23084 -5.22810 -0.63940 0.12741 0.72776 1.08760 1.33525 1.48830 1.52811 1.61164 1.84328 1.93889 2.43904 2.54455 2.86533 3.23800 3.33616 3.36343 3.37818 3.62823 3.80723 3.85444 4.02560 4.08616 4.13319 4.20478 4.32595 4.36862 4.39549 4.53066 4.56902 4.63651 4.67065 4.71688 4.73972 4.83549 4.90862 4.93984 4.97811 5.07291 5.16963 5.22021 5.27709 5.34533 5.46489 5.49047 5.80151 5.89813 6.05590 6.37234 6.85515 6.90507 7.03959 7.64946 8.04244 8.91157 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003254 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.566210 B = 8602.713001 C = 9935.281625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.019 4.019 3 C -0.125 4.125 4 C 0.166 3.834 5 N -0.341 5.341 6 C 0.271 3.729 7 N -0.562 5.562 8 C 0.208 3.792 9 N -0.348 5.348 10 C -0.130 4.130 11 C -0.054 4.054 12 C -0.148 4.148 13 C 0.559 3.441 14 O -0.569 6.569 15 N -0.594 5.594 16 C 0.092 3.908 17 C 0.128 3.872 18 N -0.612 5.612 19 C -0.269 4.269 20 H 0.064 0.936 21 C -0.006 4.006 22 N -0.907 5.907 23 Si 0.874 3.126 24 H -0.311 1.311 25 H -0.291 1.291 26 H -0.244 1.244 27 C 0.135 3.865 28 C 0.105 3.895 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.266 0.734 34 H 0.252 0.748 35 H 0.180 0.820 36 H 0.161 0.839 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.263 0.737 42 H 0.028 0.972 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 18.096 -13.264 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.020 4.020 3 C -0.146 4.146 4 C 0.073 3.927 5 N -0.125 5.125 6 C -0.023 4.023 7 N -0.288 5.288 8 C -0.094 4.094 9 N -0.173 5.173 10 C -0.150 4.150 11 C -0.073 4.073 12 C -0.151 4.151 13 C 0.349 3.651 14 O -0.450 6.450 15 N -0.325 5.325 16 C -0.032 4.032 17 C 0.002 3.998 18 N -0.336 5.336 19 C -0.397 4.397 20 H 0.081 0.919 21 C -0.204 4.204 22 N -0.549 5.549 23 Si 0.702 3.298 24 H -0.240 1.240 25 H -0.218 1.218 26 H -0.168 1.168 27 C 0.009 3.991 28 C -0.019 4.019 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.159 0.841 33 H 0.281 0.719 34 H 0.267 0.733 35 H 0.197 0.803 36 H 0.179 0.821 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.938 18.322 -13.567 22.880 hybrid contribution -0.302 0.040 1.286 1.321 sum 1.636 18.362 -12.281 22.151 Atomic orbital electron populations 1.20845 0.89716 1.02973 1.03466 1.19829 0.97051 0.90709 0.94448 1.20675 0.92058 0.98458 1.03361 1.17837 0.91605 0.82330 1.00955 1.47759 1.06401 1.04654 1.53670 1.27168 0.84967 0.96704 0.93428 1.70699 1.29658 1.03213 1.25183 1.26858 0.84374 1.02583 0.95574 1.78122 1.23886 0.87685 1.27578 1.21044 1.02288 0.88378 1.03328 1.21398 0.91625 0.99506 0.94754 1.19885 0.94979 0.92402 1.07853 1.18512 0.83104 0.83724 0.79772 1.90738 1.29698 1.82093 1.42431 1.48009 1.37374 1.12282 1.34873 1.22724 0.89548 1.03006 0.87911 1.21728 0.96032 0.86304 0.95707 1.44476 1.40225 1.10199 1.38679 1.18748 1.26320 0.88414 1.06170 0.91857 1.25224 0.95980 0.98570 1.00653 1.70343 1.12666 1.43031 1.28894 0.87053 0.78105 0.83404 0.81276 1.24013 1.21768 1.16823 1.21384 0.89472 1.00368 0.87854 1.22089 0.98321 0.83179 0.98299 0.89899 0.92597 0.89688 0.84059 0.71898 0.73259 0.80256 0.82139 0.89955 0.87190 0.95420 0.92030 0.92804 0.95441 0.90477 0.88761 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 9.07 71.24 0.65 -1.93 16 2 C -0.02 -0.43 5.90 -19.63 -0.12 -0.55 16 3 C -0.13 -2.60 9.33 22.34 0.21 -2.39 16 4 C 0.17 2.99 6.70 38.25 0.26 3.24 16 5 N -0.34 -6.14 3.81 -191.16 -0.73 -6.87 16 6 C 0.27 3.70 11.97 180.24 2.16 5.85 16 7 N -0.56 -9.77 11.19 -203.69 -2.28 -12.05 16 8 C 0.21 3.41 13.03 180.75 2.35 5.77 16 9 N -0.35 -7.12 12.03 -61.21 -0.74 -7.85 16 10 C -0.13 -1.75 9.45 22.35 0.21 -1.53 16 11 C -0.05 -0.93 7.40 22.50 0.17 -0.77 16 12 C -0.15 -3.52 4.98 -20.08 -0.10 -3.62 16 13 C 0.56 16.62 6.43 86.73 0.56 17.18 16 14 O -0.57 -19.87 14.74 -3.95 -0.06 -19.93 16 15 N -0.59 -17.97 2.94 -820.76 -2.41 -20.39 16 16 C 0.09 2.69 5.33 86.57 0.46 3.15 16 17 C 0.13 4.96 4.59 86.57 0.40 5.36 16 18 N -0.61 -26.77 2.90 -697.34 -2.02 -28.79 16 19 C -0.27 -14.09 9.91 84.03 0.83 -13.25 16 20 H 0.06 3.57 7.95 -2.91 -0.02 3.55 16 21 C -0.01 -0.30 4.83 84.86 0.41 0.11 16 22 N -0.91 -52.47 13.97 21.65 0.30 -52.17 16 23 Si 0.87 41.39 26.12 68.60 1.79 43.18 16 24 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.24 -10.78 5.13 99.48 0.51 -10.27 16 27 C 0.14 4.94 6.67 86.41 0.58 5.51 16 28 C 0.10 3.30 6.60 86.41 0.57 3.87 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.51 6.41 -2.39 -0.02 1.50 16 31 H 0.08 1.57 8.11 -2.39 -0.02 1.55 16 32 H 0.14 2.91 7.72 -2.91 -0.02 2.88 16 33 H 0.27 0.86 7.08 -2.91 -0.02 0.83 16 34 H 0.25 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.18 0.87 6.78 -2.91 -0.02 0.85 16 36 H 0.16 2.30 7.02 -2.91 -0.02 2.28 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.11 2.58 4.83 -2.39 -0.01 2.57 16 39 H 0.03 1.09 7.18 -2.38 -0.02 1.08 16 40 H 0.06 2.58 4.49 -2.39 -0.01 2.57 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 2.75 7.86 -2.39 -0.02 2.73 16 44 H 0.09 2.86 6.99 -2.39 -0.02 2.85 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -72.64 360.57 4.28 -68.36 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.84 Total: 10.50 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 9.59 Total: 26.01 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -7.88 Total: -128.12 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.06 Total: -19.93 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.79 Total: 43.18 kcal Total: -72.64 4.28 -68.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332452532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.941 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds