Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00598 * 2 1 4 4 N 1.46499 * 109.47706 * 124.99428 * 3 2 1 5 5 C 1.46494 * 120.00136 * 270.00533 * 4 3 2 6 6 C 1.50703 * 109.47185 * 269.99726 * 5 4 3 7 7 H 1.08000 * 119.99481 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00233 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00053 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99863 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47595 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47582 * 119.99557 * 10 8 6 13 13 H 1.48504 * 109.47041 * 239.99586 * 10 8 6 14 14 C 1.34770 * 119.99988 * 89.99820 * 4 3 2 15 15 O 1.21280 * 120.00185 * 180.02562 * 14 4 3 16 16 C 1.50702 * 120.00002 * 0.02562 * 14 4 3 17 17 N 1.46502 * 109.47307 * 179.97438 * 16 14 4 18 18 N 1.28734 * 125.33900 * 89.97570 * 17 16 14 19 19 N 1.28991 * 108.94102 * 180.02562 * 18 17 16 20 20 C 1.34039 * 107.26771 * 359.97438 * 19 18 17 21 21 C 1.48469 * 126.67406 * 180.02562 * 20 19 18 22 22 C 1.39295 * 120.11945 * 179.70569 * 21 20 19 23 23 C 1.38029 * 119.88362 * 179.72393 * 22 21 20 24 24 C 1.38321 * 120.11479 * 0.54989 * 23 22 21 25 25 C 1.50699 * 119.88348 * 179.74806 * 24 23 22 26 26 C 1.38316 * 120.23441 * 359.72114 * 24 23 22 27 27 C 1.38026 * 120.11835 * 0.02562 * 26 24 23 28 28 N 1.28874 * 125.34237 * 269.99659 * 17 16 14 29 29 H 1.08005 * 119.99204 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00139 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99808 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.46535 * 4.99380 * 3 2 1 33 33 H 1.09003 * 109.46917 * 245.00062 * 3 2 1 34 34 H 1.08999 * 109.47309 * 29.99591 * 5 4 3 35 35 H 1.08996 * 109.47515 * 149.99498 * 5 4 3 36 36 H 0.96995 * 119.99732 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47169 * 59.99526 * 16 14 4 38 38 H 1.09000 * 109.47089 * 299.99609 * 16 14 4 39 39 H 1.08006 * 120.05979 * 359.97438 * 22 21 20 40 40 H 1.08001 * 119.94408 * 180.27298 * 23 22 21 41 41 H 1.08999 * 109.46996 * 269.97679 * 25 24 23 42 42 H 1.09001 * 109.46710 * 29.97679 * 25 24 23 43 43 H 1.08995 * 109.47023 * 149.97606 * 25 24 23 44 44 H 1.07997 * 119.94011 * 179.97438 * 26 24 23 45 45 H 1.08006 * 120.06002 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3437 2.4803 7 1 3.3041 3.8369 1.6366 8 6 2.5194 4.0667 3.6084 9 7 1.9599 3.4660 4.6360 10 14 2.8726 5.8997 3.6768 11 1 3.5006 6.3308 2.4020 12 1 1.6021 6.6415 3.8789 13 1 3.7965 6.1840 4.8042 14 6 4.2497 0.8661 0.9825 15 8 5.0196 0.8879 1.9193 16 6 4.6973 0.3181 -0.3480 17 7 6.0918 -0.1202 -0.2515 18 7 6.4797 -1.3008 0.0845 19 7 7.7690 -1.3387 0.0670 20 6 8.1979 -0.1225 -0.2982 21 6 9.6095 0.3095 -0.4563 22 6 9.9016 1.6132 -0.8504 23 6 11.2158 2.0112 -0.9905 24 6 12.2417 1.1148 -0.7512 25 6 13.6746 1.5533 -0.9112 26 6 11.9571 -0.1825 -0.3651 27 6 10.6465 -0.5894 -0.2171 28 7 7.1227 0.6157 -0.4894 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4025 -0.9314 34 1 1.4888 1.6968 2.5458 35 1 3.0989 1.3604 3.2259 36 1 1.7317 3.9746 5.4297 37 1 4.6126 1.0949 -1.1080 38 1 4.0681 -0.5287 -0.6224 39 1 9.1012 2.3126 -1.0422 40 1 11.4435 3.0231 -1.2917 41 1 13.9982 1.3704 -1.9358 42 1 13.7558 2.6173 -0.6889 43 1 14.3059 0.9895 -0.2245 44 1 12.7618 -0.8786 -0.1799 45 1 10.4253 -1.6025 0.0848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359433389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = 142.673553 kcal Electronic energy + Delta-G solvation = -28303.343678 eV Core-core repulsion = 24324.910874 eV Total energy + Delta-G solvation = -3978.432804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.15409 -39.55133 -39.34385 -36.04225 -35.03798 -33.83294 -33.34034 -32.36404 -32.15627 -31.12457 -29.68454 -27.67534 -27.02915 -25.67082 -23.98497 -23.52371 -22.87753 -21.92058 -21.12057 -20.19427 -19.12856 -17.92018 -17.46639 -16.79554 -16.52351 -16.04185 -15.42953 -15.40721 -15.31176 -15.09517 -14.64399 -14.22936 -14.01109 -13.89295 -13.67667 -13.59086 -13.36306 -12.90778 -12.74326 -12.50003 -12.45439 -12.22717 -11.96410 -11.86998 -11.50941 -11.42198 -11.22914 -11.20503 -11.01218 -10.96768 -10.80747 -10.72091 -10.62384 -10.29248 -9.76982 -9.38377 -9.31044 -9.10686 -8.53388 -8.52123 -7.97987 -6.14316 -4.19875 0.71623 1.25687 1.37166 1.85925 2.28572 2.47020 2.91155 3.24119 3.32547 3.35579 3.59518 3.68332 3.77819 4.22601 4.35441 4.56236 4.62974 4.65933 4.72467 4.83270 4.86812 5.05468 5.20271 5.20880 5.23047 5.24726 5.32421 5.35296 5.44846 5.55704 5.57997 5.79439 5.84948 5.87347 5.90804 5.99007 6.09455 6.29041 6.37048 6.40785 6.63487 6.71362 6.76562 6.85248 7.23705 7.32324 7.80456 8.03697 8.09422 8.44293 8.57469 8.84789 9.45633 10.94035 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.002766 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.797024 B =10120.949108 C =12094.586796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.179 4.179 3 C 0.130 3.870 4 N -0.581 5.581 5 C 0.248 3.752 6 C -0.531 4.531 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.496 3.504 15 O -0.517 6.517 16 C 0.105 3.895 17 N -0.114 5.114 18 N -0.049 5.049 19 N -0.277 5.277 20 C 0.203 3.797 21 C -0.011 4.011 22 C -0.077 4.077 23 C -0.123 4.123 24 C -0.075 4.075 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.075 4.075 28 N -0.286 5.286 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.128 0.872 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.539 -6.460 -16.170 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C 0.006 3.994 4 N -0.313 5.313 5 C 0.130 3.870 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.279 3.721 15 O -0.393 6.393 16 C -0.019 4.019 17 N -0.025 5.025 18 N -0.041 5.041 19 N -0.149 5.149 20 C -0.076 4.076 21 C -0.014 4.014 22 C -0.097 4.097 23 C -0.141 4.141 24 C -0.075 4.075 25 C -0.173 4.173 26 C -0.142 4.142 27 C -0.095 4.095 28 N -0.136 5.136 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.146 0.854 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.251 -6.801 -15.318 20.186 hybrid contribution 0.145 1.336 0.143 1.352 sum 11.396 -5.464 -15.175 19.749 Atomic orbital electron populations 1.23867 0.95800 1.02032 0.99263 1.23387 0.96622 0.98701 1.01070 1.20732 0.93425 0.96155 0.89091 1.48211 1.09390 1.59365 1.14329 1.19392 0.95702 0.93972 0.77928 1.21417 1.41002 0.93027 1.01512 0.92269 1.24933 0.94882 0.98938 0.95244 1.69938 1.41731 1.36236 1.05158 0.86428 0.77975 0.84691 0.78260 1.19722 1.20856 1.20810 1.19905 0.83653 0.80148 0.88431 1.90800 1.52282 1.55432 1.40767 1.22324 0.74189 1.04215 1.01211 1.49369 1.08138 1.05319 1.39714 1.78877 1.06626 1.04800 1.13841 1.75944 1.00566 1.20178 1.18202 1.23520 0.94325 0.87813 1.01968 1.17253 0.85655 0.94596 1.03905 1.21218 0.97241 0.94558 0.96668 1.20961 0.91760 0.99778 1.01650 1.20082 0.95965 0.93847 0.97653 1.20827 0.92148 1.01943 1.02345 1.20945 0.96128 0.95768 1.01379 1.21177 0.91559 0.99675 0.97137 1.74855 0.93766 1.23147 1.21875 0.88100 0.88527 0.87557 0.88563 0.90759 0.94337 0.93719 0.92619 0.84162 0.84136 0.84840 0.85400 0.90992 0.91358 0.91375 0.85398 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 14.32 29.02 0.42 -1.49 16 2 C -0.18 -2.14 9.74 -36.02 -0.35 -2.49 16 3 C 0.13 1.78 5.65 -5.19 -0.03 1.75 16 4 N -0.58 -11.20 2.44 -176.44 -0.43 -11.63 16 5 C 0.25 6.19 5.16 -5.20 -0.03 6.16 16 6 C -0.53 -14.50 9.39 -34.44 -0.32 -14.83 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 10 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.50 9.71 7.74 -10.99 -0.09 9.62 16 15 O -0.52 -13.06 16.01 5.56 0.09 -12.97 16 16 C 0.10 1.45 5.63 -5.19 -0.03 1.42 16 17 N -0.11 -1.94 3.48 -11.67 -0.04 -1.98 16 18 N -0.05 -0.87 13.23 60.35 0.80 -0.07 16 19 N -0.28 -4.91 12.23 32.16 0.39 -4.52 16 20 C 0.20 3.42 7.94 -156.31 -1.24 2.18 16 21 C -0.01 -0.15 5.88 -104.89 -0.62 -0.77 16 22 C -0.08 -0.95 9.70 -39.27 -0.38 -1.33 16 23 C -0.12 -1.25 9.68 -39.63 -0.38 -1.63 16 24 C -0.07 -0.69 5.88 -104.56 -0.62 -1.31 16 25 C -0.12 -0.73 10.01 36.01 0.36 -0.37 16 26 C -0.12 -1.20 9.68 -39.63 -0.38 -1.59 16 27 C -0.08 -0.90 9.70 -39.26 -0.38 -1.28 16 28 N -0.29 -5.00 11.85 32.17 0.38 -4.62 16 29 H 0.10 1.10 7.84 -52.48 -0.41 0.69 16 30 H 0.10 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.11 1.16 7.83 -52.48 -0.41 0.75 16 32 H 0.10 1.39 7.72 -51.93 -0.40 0.99 16 33 H 0.07 0.75 6.44 -51.93 -0.33 0.41 16 34 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.14 1.48 7.40 -51.93 -0.38 1.09 16 38 H 0.14 1.41 7.78 -51.93 -0.40 1.00 16 39 H 0.13 1.64 7.88 -52.48 -0.41 1.23 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 43 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.14 1.54 7.89 -52.48 -0.41 1.12 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -35.85 395.83 -7.35 -43.20 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.05 Total: -0.24 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -4.17 Total: -4.30 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 1.84 Total: -48.12 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.85 -7.35 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359433389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.874 kcal (2) G-P(sol) polarization free energy of solvation -35.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds