Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38148 * 120.03154 * 2 1 4 4 C 1.38255 * 120.06596 * 179.97438 * 3 2 1 5 5 C 1.38297 * 120.13143 * 0.02562 * 4 3 2 6 6 C 1.38101 * 120.06651 * 359.72439 * 5 4 3 7 7 C 1.38805 * 120.03597 * 180.02562 * 2 1 3 8 8 N 1.40225 * 120.06663 * 359.97438 * 7 2 1 9 9 C 1.35076 * 126.61636 * 173.19610 * 8 7 2 10 10 C 1.36616 * 106.79401 * 180.24297 * 9 8 7 11 11 C 1.47516 * 125.76503 * 179.71784 * 10 9 8 12 12 O 1.21595 * 119.99626 * 6.89432 * 11 10 9 13 13 N 1.34771 * 119.99930 * 186.88616 * 11 10 9 14 14 C 1.46970 * 120.59549 * 355.38182 * 13 11 10 15 15 C 1.53815 * 108.39882 * 124.75508 * 14 13 11 16 16 N 1.46971 * 108.57740 * 49.63615 * 15 14 13 17 17 C 1.36931 * 120.58894 * 124.66952 * 16 15 14 18 18 H 1.08007 * 120.00138 * 213.43710 * 17 16 15 19 19 C 1.38819 * 120.00533 * 33.44059 * 17 16 15 20 20 N 1.31619 * 119.99594 * 8.42551 * 19 17 16 21 21 Si 1.86797 * 120.00032 * 188.42753 * 19 17 16 22 22 H 1.48494 * 109.47243 * 60.00143 * 21 19 17 23 23 H 1.48502 * 109.46820 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47433 * 299.99668 * 21 19 17 25 25 C 1.46963 * 118.81219 * 304.64616 * 16 15 14 26 26 C 1.46965 * 120.59390 * 175.65467 * 13 11 10 27 27 N 1.34411 * 108.46787 * 359.61389 * 10 9 8 28 28 N 1.28754 * 109.57969 * 0.39897 * 27 10 9 29 29 H 1.08993 * 109.47771 * 262.57638 * 1 2 3 30 30 H 1.09006 * 109.47372 * 22.58299 * 1 2 3 31 31 H 1.09010 * 109.46842 * 142.57448 * 1 2 3 32 32 H 1.08001 * 119.96603 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.93415 * 180.02562 * 4 3 2 34 34 H 1.08000 * 119.96864 * 179.97438 * 5 4 3 35 35 H 1.08000 * 120.03466 * 180.26861 * 6 5 4 36 36 H 1.07998 * 126.59990 * 359.97438 * 9 8 7 37 37 H 1.08997 * 109.60948 * 244.53666 * 14 13 11 38 38 H 1.09001 * 109.60504 * 5.05027 * 14 13 11 39 39 H 1.08997 * 109.73959 * 289.84889 * 15 14 13 40 40 H 1.08994 * 109.53027 * 169.30157 * 15 14 13 41 41 H 0.96996 * 119.99697 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.61028 * 295.48075 * 25 16 15 43 43 H 1.09003 * 109.74442 * 175.05903 * 25 16 15 44 44 H 1.09003 * 109.61040 * 354.95603 * 26 13 11 45 45 H 1.09006 * 109.60728 * 115.46266 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2758 0.0012 0.0005 6 6 3.5902 -1.1976 0.0058 7 6 2.2017 -1.2016 -0.0005 8 7 1.5028 -2.4173 -0.0005 9 6 2.0344 -3.6523 -0.1295 10 6 0.9945 -4.5369 -0.0799 11 6 1.1047 -6.0040 -0.1869 12 8 2.2001 -6.5315 -0.2069 13 7 -0.0087 -6.7597 -0.2623 14 6 -1.3387 -6.1467 -0.1377 15 6 -2.1650 -6.5233 -1.3792 16 7 -2.0707 -7.9759 -1.5814 17 6 -3.2020 -8.7437 -1.6581 18 1 -3.1957 -9.7542 -1.2768 19 6 -4.3570 -8.2233 -2.2259 20 7 -4.3222 -7.0587 -2.8381 21 14 -5.9603 -9.1759 -2.1209 22 1 -6.3222 -9.3804 -0.6953 23 1 -7.0365 -8.4097 -2.7992 24 1 -5.7972 -10.4943 -2.7842 25 6 -0.7407 -8.5896 -1.7004 26 6 0.0855 -8.2123 -0.4647 27 7 -0.1458 -3.8446 0.0852 28 7 0.1171 -2.5851 0.1331 29 1 -0.3634 -0.1328 1.0189 30 1 -0.3634 0.9489 -0.3947 31 1 -0.3633 -0.8162 -0.6246 32 1 1.6583 2.1313 0.0004 33 1 4.1193 2.1331 0.0010 34 1 5.3558 0.0049 0.0005 35 1 4.1334 -2.1310 0.0101 36 1 3.0798 -3.8937 -0.2528 37 1 -1.8311 -6.5205 0.7600 38 1 -1.2378 -5.0630 -0.0784 39 1 -1.7716 -6.0058 -2.2541 40 1 -3.2065 -6.2425 -1.2226 41 1 -5.1292 -6.6949 -3.2345 42 1 -0.2459 -8.2193 -2.5983 43 1 -0.8391 -9.6737 -1.7578 44 1 1.1270 -8.4931 -0.6212 45 1 -0.3079 -8.7298 0.4104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413482878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = 148.924682 kcal Electronic energy + Delta-G solvation = -29277.083639 eV Core-core repulsion = 25298.921904 eV Total energy + Delta-G solvation = -3978.161735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59526 -39.94257 -39.16044 -36.69782 -34.97602 -33.74278 -33.35793 -31.54821 -30.90314 -30.33428 -29.73152 -27.42589 -26.95862 -24.81966 -24.03720 -23.05225 -22.69964 -21.84720 -21.67209 -20.36809 -19.21023 -18.17648 -16.98475 -16.41135 -16.21193 -16.07852 -15.82579 -15.42155 -15.14263 -14.71955 -14.65055 -14.37293 -13.92843 -13.66998 -13.60868 -13.52529 -13.29894 -13.17051 -13.03420 -12.63361 -12.36123 -12.23204 -11.99465 -11.67772 -11.46932 -11.39227 -11.29780 -10.85927 -10.71060 -10.49070 -10.44692 -10.13075 -9.93108 -9.80309 -9.60503 -9.30972 -9.26539 -8.78579 -8.49610 -8.17506 -6.54854 -5.77029 -3.29290 0.17676 0.78990 1.49387 1.72764 1.76637 3.20864 3.33444 3.39412 3.44362 3.45413 3.53447 4.03670 4.10879 4.27377 4.48096 4.51187 4.57642 4.66099 4.79001 4.87817 5.01049 5.10609 5.29952 5.33225 5.41515 5.42419 5.52663 5.60054 5.78855 5.92564 5.95030 5.97377 6.00711 6.08678 6.13867 6.16699 6.23577 6.43215 6.55195 6.58304 6.75595 6.85908 7.09995 7.36892 7.63707 7.76902 7.81486 8.00504 8.47878 8.50036 9.21797 9.81664 10.41780 11.29730 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018724 B = 0.002619 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.025096 B =10687.495382 C =11912.930102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.103 4.103 4 C -0.112 4.112 5 C -0.105 4.105 6 C -0.120 4.120 7 C 0.130 3.870 8 N -0.309 5.309 9 C 0.084 3.916 10 C -0.073 4.073 11 C 0.592 3.408 12 O -0.559 6.559 13 N -0.574 5.574 14 C 0.041 3.959 15 C 0.164 3.836 16 N -0.593 5.593 17 C -0.256 4.256 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.904 5.904 21 Si 0.907 3.093 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.132 3.868 26 C 0.095 3.905 27 N -0.191 5.191 28 N -0.058 5.058 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.206 0.794 37 H 0.059 0.941 38 H 0.131 0.869 39 H 0.020 0.980 40 H 0.099 0.901 41 H 0.256 0.744 42 H 0.022 0.978 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.437 17.439 6.792 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.067 4.067 3 C -0.122 4.122 4 C -0.130 4.130 5 C -0.123 4.123 6 C -0.141 4.141 7 C 0.038 3.962 8 N -0.087 5.087 9 C -0.069 4.069 10 C -0.210 4.210 11 C 0.378 3.622 12 O -0.439 6.439 13 N -0.303 5.303 14 C -0.084 4.084 15 C 0.038 3.962 16 N -0.316 5.316 17 C -0.386 4.386 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.736 3.264 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.005 3.995 26 C -0.029 4.029 27 N -0.063 5.063 28 N -0.035 5.035 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.222 0.778 37 H 0.077 0.923 38 H 0.147 0.853 39 H 0.038 0.962 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.443 17.868 6.863 24.594 hybrid contribution 0.057 -0.889 -0.172 0.907 sum 15.500 16.979 6.690 23.944 Atomic orbital electron populations 1.21114 0.89117 1.03664 1.03967 1.19832 0.97553 0.90736 0.98610 1.21045 0.94210 0.97094 0.99821 1.21322 0.94248 0.98534 0.98932 1.21000 1.00386 0.91282 0.99664 1.20970 0.90971 1.00151 1.02025 1.17542 0.90575 0.82277 1.05789 1.47596 1.08064 1.04880 1.48208 1.23271 1.01514 0.83002 0.99110 1.21585 0.88666 0.96408 1.14359 1.16791 0.84576 0.83255 0.77620 1.90741 1.26511 1.72752 1.53866 1.47920 1.06537 1.08301 1.67573 1.23849 0.81530 1.01570 1.01437 1.21224 0.99776 0.83921 0.91292 1.43982 1.00194 1.03495 1.83901 1.19128 0.88967 0.97531 1.32958 0.91829 1.25250 0.99362 0.97537 0.97108 1.69937 1.27773 1.18704 1.38327 0.86314 0.83057 0.79270 0.77726 1.20906 1.21595 1.20850 1.21294 0.87303 0.97505 0.93404 1.22312 1.01286 0.78984 1.00347 1.74377 1.23158 0.98464 1.10314 1.82197 0.88392 1.10967 1.21934 0.90191 0.91431 0.88936 0.84676 0.85085 0.84656 0.84684 0.77778 0.92253 0.85288 0.96175 0.88278 0.93436 0.95965 0.91468 0.89941 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.69 36.00 0.31 -0.85 16 2 C -0.07 -0.61 5.89 -104.45 -0.62 -1.22 16 3 C -0.10 -0.71 9.67 -39.61 -0.38 -1.09 16 4 C -0.11 -0.63 10.04 -39.55 -0.40 -1.03 16 5 C -0.10 -0.62 10.04 -39.61 -0.40 -1.02 16 6 C -0.12 -0.93 9.47 -39.41 -0.37 -1.30 16 7 C 0.13 1.34 6.67 -83.58 -0.56 0.78 16 8 N -0.31 -3.91 3.79 -10.42 -0.04 -3.95 16 9 C 0.08 1.08 10.60 -16.71 -0.18 0.90 16 10 C -0.07 -1.19 6.77 -83.54 -0.57 -1.76 16 11 C 0.59 11.12 7.69 -12.48 -0.10 11.02 16 12 O -0.56 -11.07 16.29 5.28 0.09 -10.98 16 13 N -0.57 -11.37 2.94 -173.44 -0.51 -11.88 16 14 C 0.04 0.84 6.51 -3.36 -0.02 0.81 16 15 C 0.16 4.03 5.46 -3.36 -0.02 4.01 16 16 N -0.59 -15.13 2.95 -171.76 -0.51 -15.63 16 17 C -0.26 -7.02 9.57 -15.06 -0.14 -7.16 16 18 H 0.06 1.70 7.84 -52.48 -0.41 1.29 16 19 C 0.01 0.18 5.09 -17.43 -0.09 0.09 16 20 N -0.90 -26.22 11.04 55.49 0.61 -25.61 16 21 Si 0.91 21.66 29.56 -169.99 -5.03 16.64 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.87 6.67 -3.60 -0.02 2.85 16 26 C 0.09 1.82 6.58 -3.60 -0.02 1.80 16 27 N -0.19 -3.23 8.63 32.85 0.28 -2.95 16 28 N -0.06 -0.86 9.97 60.35 0.60 -0.26 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.50 8.03 -51.93 -0.42 0.08 16 31 H 0.09 1.10 5.84 -51.92 -0.30 0.79 16 32 H 0.14 0.64 8.05 -52.49 -0.42 0.21 16 33 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 34 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.14 0.81 6.86 -52.49 -0.36 0.45 16 36 H 0.21 1.92 7.18 -52.49 -0.38 1.55 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.13 2.53 3.58 -132.69 -0.48 2.05 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 2.67 6.10 -51.93 -0.32 2.35 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 44 H 0.08 1.50 7.01 -51.93 -0.36 1.13 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -33.01 365.50 -8.51 -41.52 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.95 Total: 0.77 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -3.57 Total: 6.83 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.44 Total: -60.28 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.01 -8.51 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413482878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.448 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds