Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35245 * 126.07024 * 2 1 4 4 C 1.40402 * 107.86832 * 180.10225 * 3 2 1 5 5 N 1.40184 * 125.97749 * 179.89131 * 4 3 2 6 6 C 1.34775 * 119.99760 * 359.70637 * 5 4 3 7 7 O 1.21605 * 120.00054 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00327 * 180.02562 * 6 5 4 9 9 C 1.40184 * 120.00338 * 185.31858 * 8 6 5 10 10 C 1.38854 * 120.15527 * 213.14725 * 9 8 6 11 11 C 1.37792 * 120.15380 * 180.02562 * 10 9 8 12 12 C 1.39653 * 120.37478 * 359.95437 * 11 10 9 13 13 C 1.38582 * 119.15026 * 0.04497 * 12 11 10 14 14 C 1.38152 * 120.53363 * 359.97438 * 13 12 11 15 15 C 1.51228 * 108.56261 * 179.97438 * 13 12 11 16 16 C 1.53734 * 104.58490 * 359.97438 * 15 13 12 17 17 N 1.39857 * 129.24836 * 180.02562 * 12 11 10 18 18 N 1.31214 * 108.05321 * 359.61942 * 4 3 2 19 19 N 1.34966 * 126.07193 * 179.67722 * 2 1 3 20 20 C 1.46494 * 125.97355 * 0.04022 * 19 2 1 21 21 C 1.50700 * 109.47099 * 269.97214 * 20 19 2 22 22 H 1.08001 * 120.00132 * 359.97438 * 21 20 19 23 23 C 1.37884 * 120.00196 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99915 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99960 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46903 * 60.00668 * 25 23 21 27 27 H 1.48499 * 109.46934 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47016 * 300.00561 * 25 23 21 29 29 H 1.09002 * 109.47463 * 270.32418 * 1 2 3 30 30 H 1.09004 * 109.47166 * 30.31986 * 1 2 3 31 31 H 1.09004 * 109.47271 * 150.31594 * 1 2 3 32 32 H 1.07996 * 126.06838 * 359.94890 * 3 2 1 33 33 H 0.96996 * 120.00272 * 179.71485 * 5 4 3 34 34 H 0.96999 * 119.99438 * 5.30937 * 8 6 5 35 35 H 1.07998 * 119.92333 * 0.02562 * 10 9 8 36 36 H 1.08003 * 119.81088 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.95009 * 180.02562 * 14 13 12 38 38 H 1.08999 * 110.41599 * 118.77648 * 15 13 12 39 39 H 1.09009 * 110.40820 * 241.22391 * 15 13 12 40 40 H 1.08998 * 110.30114 * 241.07199 * 16 15 13 41 41 H 1.08999 * 110.29595 * 118.93254 * 16 15 13 42 42 H 0.96999 * 124.97852 * 359.75740 * 17 12 11 43 43 H 1.08999 * 109.47737 * 29.97169 * 20 19 2 44 44 H 1.09000 * 109.47454 * 149.97507 * 20 19 2 45 45 H 0.96994 * 120.00192 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 -0.0024 5 7 4.7737 1.4750 -0.0053 6 6 4.6370 2.8158 -0.0120 7 8 3.5276 3.3139 -0.0151 8 7 5.7297 3.6047 -0.0154 9 6 5.5905 4.9956 0.0902 10 6 6.4848 5.8373 -0.5578 11 6 6.3482 7.2045 -0.4536 12 6 5.3109 7.7550 0.3023 13 6 4.4222 6.9088 0.9462 14 6 4.5582 5.5378 0.8428 15 6 3.4073 7.7501 1.6873 16 6 3.8191 9.2017 1.3931 17 7 5.0004 9.0991 0.5322 18 7 3.6336 -0.6575 0.0045 19 7 2.3017 -1.0909 0.0061 20 6 1.8501 -2.4845 0.0132 21 6 1.6951 -2.9551 1.4364 22 1 1.9117 -2.2835 2.2539 23 6 1.2767 -4.2433 1.6949 24 7 1.0133 -5.0613 0.6994 25 14 1.0852 -4.8268 3.4590 26 1 0.0850 -3.9783 4.1553 27 1 0.6274 -6.2394 3.4662 28 1 2.3916 -4.7268 4.1580 29 1 -0.3634 0.0058 1.0276 30 1 -0.3634 0.8871 -0.5188 31 1 -0.3634 -0.8928 -0.5089 32 1 1.9720 2.1211 -0.0008 33 1 5.6586 1.0778 -0.0026 34 1 6.6126 3.2100 -0.0907 35 1 7.2892 5.4195 -1.1448 36 1 7.0467 7.8540 -0.9602 37 1 3.8600 4.8871 1.3482 38 1 2.4036 7.5553 1.3097 39 1 3.4572 7.5506 2.7578 40 1 4.0693 9.7190 2.3194 41 1 3.0167 9.7242 0.8722 42 1 5.4972 9.8531 0.1776 43 1 0.8915 -2.5585 -0.5004 44 1 2.5848 -3.1071 -0.4974 45 1 0.7193 -5.9676 0.8812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415877600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = 94.172237 kcal Electronic energy + Delta-G solvation = -28125.137426 eV Core-core repulsion = 24144.601447 eV Total energy + Delta-G solvation = -3980.535979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04421 -40.44609 -39.58508 -36.88891 -34.79582 -34.06403 -33.28897 -32.06929 -31.37833 -30.77819 -29.01198 -28.32655 -26.58280 -26.29200 -23.87063 -22.98687 -22.22008 -21.80925 -20.97687 -19.91384 -19.57294 -18.08492 -17.38933 -17.07041 -16.66459 -15.93602 -15.82636 -15.76655 -15.45125 -15.08660 -14.54785 -14.34599 -14.03788 -13.92414 -13.69395 -13.10261 -12.91297 -12.85130 -12.73057 -12.45723 -12.32851 -12.26680 -12.21826 -12.14126 -11.65389 -11.38472 -11.31236 -11.08614 -10.83374 -10.78616 -10.44390 -10.22225 -9.98221 -9.65837 -9.53310 -9.38764 -8.81813 -8.62608 -7.91880 -7.45190 -7.19178 -6.23951 -4.31493 1.27682 1.41063 2.33743 2.64582 3.06976 3.18119 3.24311 3.28046 3.32174 3.59047 3.67849 3.88147 4.21307 4.33054 4.44672 4.50096 4.83644 4.93536 5.01030 5.09621 5.21814 5.30065 5.36268 5.43507 5.63499 5.67958 5.71650 5.83305 5.91446 5.95169 6.11414 6.14754 6.24584 6.31737 6.42028 6.47283 6.57551 6.63883 6.69019 6.94938 7.06077 7.09893 7.15356 7.51393 7.60061 7.68528 7.89825 7.91765 8.08170 8.53848 8.67899 8.76839 9.34568 10.83207 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002031 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.909098 B =13784.954725 C =14199.726998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.288 4.288 4 C 0.281 3.719 5 N -0.640 5.640 6 C 0.711 3.289 7 O -0.551 6.551 8 N -0.681 5.681 9 C 0.120 3.880 10 C -0.101 4.101 11 C -0.162 4.162 12 C 0.176 3.824 13 C -0.152 4.152 14 C -0.059 4.059 15 C -0.085 4.085 16 C 0.121 3.879 17 N -0.751 5.751 18 N -0.322 5.322 19 N -0.318 5.318 20 C 0.259 3.741 21 C -0.535 4.535 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.275 1.275 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.407 0.593 34 H 0.406 0.594 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.409 0.591 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.761 26.185 -1.356 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.319 4.319 4 C 0.028 3.972 5 N -0.290 5.290 6 C 0.411 3.589 7 O -0.425 6.425 8 N -0.329 5.329 9 C 0.024 3.976 10 C -0.122 4.122 11 C -0.186 4.186 12 C 0.073 3.927 13 C -0.157 4.157 14 C -0.080 4.080 15 C -0.122 4.122 16 C -0.004 4.004 17 N -0.385 5.385 18 N -0.153 5.153 19 N -0.100 5.100 20 C 0.141 3.859 21 C -0.574 4.574 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.242 0.758 34 H 0.241 0.759 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.246 0.754 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.238 25.293 -1.316 26.633 hybrid contribution 0.703 0.070 0.693 0.990 sum 8.941 25.362 -0.623 26.899 Atomic orbital electron populations 1.20330 0.87911 1.02806 1.03141 1.21060 0.94897 0.87151 1.00924 1.21228 0.89631 0.99842 1.21229 1.18626 0.86435 0.89255 1.02916 1.41339 1.07819 1.03518 1.76299 1.15599 0.84598 0.80493 0.78203 1.90887 1.23287 1.73099 1.55207 1.42391 1.08459 1.04509 1.77591 1.17020 0.99119 0.81050 1.00388 1.20439 1.00228 0.92312 0.99225 1.20009 0.99755 0.94292 1.04499 1.18345 0.94299 0.84839 0.95191 1.19681 0.99294 0.92714 1.04004 1.20367 0.97728 0.93168 0.96749 1.21024 0.98584 0.91968 1.00633 1.21739 0.87601 0.97184 0.93864 1.44694 1.33026 1.03780 1.56980 1.77253 0.99982 1.08265 1.29800 1.48964 1.00862 1.07763 1.52399 1.19674 0.95956 0.71356 0.98884 1.21284 1.46777 0.97962 0.91366 0.91815 1.24929 0.94706 0.96059 0.98117 1.69907 1.44903 1.07002 1.31189 0.86412 0.78795 0.77641 0.83814 1.19932 1.20982 1.20011 0.90444 0.90824 0.90892 0.82185 0.75796 0.75918 0.85612 0.86253 0.84466 0.89593 0.89816 0.91802 0.91759 0.75357 0.92792 0.93040 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.00 0.36 -1.08 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -5.96 9.52 -39.83 -0.38 -6.34 16 4 C 0.28 5.73 8.11 -154.37 -1.25 4.48 16 5 N -0.64 -9.94 5.45 -15.51 -0.08 -10.02 16 6 C 0.71 10.66 8.28 -86.92 -0.72 9.94 16 7 O -0.55 -9.96 11.16 5.27 0.06 -9.90 16 8 N -0.68 -7.49 5.36 -14.18 -0.08 -7.57 16 9 C 0.12 1.39 6.29 -83.61 -0.53 0.87 16 10 C -0.10 -0.95 9.94 -39.52 -0.39 -1.34 16 11 C -0.16 -1.49 10.07 -39.22 -0.39 -1.88 16 12 C 0.18 1.76 7.03 -83.54 -0.59 1.18 16 13 C -0.15 -1.70 6.22 -104.27 -0.65 -2.35 16 14 C -0.06 -0.76 8.66 -39.41 -0.34 -1.10 16 15 C -0.08 -0.72 6.94 -27.24 -0.19 -0.91 16 16 C 0.12 0.80 7.96 -3.64 -0.03 0.77 16 17 N -0.75 -5.71 6.54 -58.06 -0.38 -6.09 16 18 N -0.32 -7.44 12.59 31.44 0.40 -7.05 16 19 N -0.32 -7.56 3.59 -58.33 -0.21 -7.76 16 20 C 0.26 6.66 5.99 -5.20 -0.03 6.63 16 21 C -0.54 -14.77 9.39 -34.44 -0.32 -15.10 16 22 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 25 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.26 7.07 -51.93 -0.37 0.89 16 32 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 33 H 0.41 4.96 8.84 -40.82 -0.36 4.60 16 34 H 0.41 2.99 8.84 -40.82 -0.36 2.63 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.14 2.00 6.41 -52.49 -0.34 1.66 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.41 2.19 8.96 -40.82 -0.37 1.82 16 43 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -33.87 378.02 -10.82 -44.69 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.82 Total: 9.43 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -6.12 Total: -3.20 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.38 Total: -62.84 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.06 Total: -9.90 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.87 -10.82 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415877600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.862 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds