Wall clock time and date at job start Sat Apr 11 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35245 * 126.07024 * 2 1 4 4 C 1.40402 * 107.86832 * 180.10225 * 3 2 1 5 5 N 1.40184 * 125.97749 * 179.89131 * 4 3 2 6 6 C 1.34775 * 119.99760 * 359.70637 * 5 4 3 7 7 O 1.21605 * 120.00054 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00327 * 180.02562 * 6 5 4 9 9 C 1.40184 * 120.00338 * 185.31858 * 8 6 5 10 10 C 1.38854 * 120.15527 * 213.14725 * 9 8 6 11 11 C 1.37792 * 120.15380 * 180.02562 * 10 9 8 12 12 C 1.39653 * 120.37478 * 359.95437 * 11 10 9 13 13 C 1.38582 * 119.15026 * 0.04497 * 12 11 10 14 14 C 1.38152 * 120.53363 * 359.97438 * 13 12 11 15 15 C 1.51228 * 108.56261 * 179.97438 * 13 12 11 16 16 C 1.53734 * 104.58490 * 359.97438 * 15 13 12 17 17 N 1.39857 * 129.24836 * 180.02562 * 12 11 10 18 18 N 1.31214 * 108.05321 * 359.61942 * 4 3 2 19 19 N 1.34966 * 126.07193 * 179.67722 * 2 1 3 20 20 C 1.46494 * 125.97355 * 0.04022 * 19 2 1 21 21 C 1.50700 * 109.47099 * 269.97214 * 20 19 2 22 22 H 1.08001 * 120.00132 * 359.97438 * 21 20 19 23 23 C 1.37884 * 120.00196 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99915 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99960 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46903 * 60.00668 * 25 23 21 27 27 H 1.48499 * 109.46934 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47016 * 300.00561 * 25 23 21 29 29 H 1.09002 * 109.47463 * 270.32418 * 1 2 3 30 30 H 1.09004 * 109.47166 * 30.31986 * 1 2 3 31 31 H 1.09004 * 109.47271 * 150.31594 * 1 2 3 32 32 H 1.07996 * 126.06838 * 359.94890 * 3 2 1 33 33 H 0.96996 * 120.00272 * 179.71485 * 5 4 3 34 34 H 0.96999 * 119.99438 * 5.30937 * 8 6 5 35 35 H 1.07998 * 119.92333 * 0.02562 * 10 9 8 36 36 H 1.08003 * 119.81088 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.95009 * 180.02562 * 14 13 12 38 38 H 1.08999 * 110.41599 * 118.77648 * 15 13 12 39 39 H 1.09009 * 110.40820 * 241.22391 * 15 13 12 40 40 H 1.08998 * 110.30114 * 241.07199 * 16 15 13 41 41 H 1.08999 * 110.29595 * 118.93254 * 16 15 13 42 42 H 0.96999 * 124.97852 * 359.75740 * 17 12 11 43 43 H 1.08999 * 109.47737 * 29.97169 * 20 19 2 44 44 H 1.09000 * 109.47454 * 149.97507 * 20 19 2 45 45 H 0.96994 * 120.00192 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 -0.0024 5 7 4.7737 1.4750 -0.0053 6 6 4.6370 2.8158 -0.0120 7 8 3.5276 3.3139 -0.0151 8 7 5.7297 3.6047 -0.0154 9 6 5.5905 4.9956 0.0902 10 6 6.4848 5.8373 -0.5578 11 6 6.3482 7.2045 -0.4536 12 6 5.3109 7.7550 0.3023 13 6 4.4222 6.9088 0.9462 14 6 4.5582 5.5378 0.8428 15 6 3.4073 7.7501 1.6873 16 6 3.8191 9.2017 1.3931 17 7 5.0004 9.0991 0.5322 18 7 3.6336 -0.6575 0.0045 19 7 2.3017 -1.0909 0.0061 20 6 1.8501 -2.4845 0.0132 21 6 1.6951 -2.9551 1.4364 22 1 1.9117 -2.2835 2.2539 23 6 1.2767 -4.2433 1.6949 24 7 1.0133 -5.0613 0.6994 25 14 1.0852 -4.8268 3.4590 26 1 0.0850 -3.9783 4.1553 27 1 0.6274 -6.2394 3.4662 28 1 2.3916 -4.7268 4.1580 29 1 -0.3634 0.0058 1.0276 30 1 -0.3634 0.8871 -0.5188 31 1 -0.3634 -0.8928 -0.5089 32 1 1.9720 2.1211 -0.0008 33 1 5.6586 1.0778 -0.0026 34 1 6.6126 3.2100 -0.0907 35 1 7.2892 5.4195 -1.1448 36 1 7.0467 7.8540 -0.9602 37 1 3.8600 4.8871 1.3482 38 1 2.4036 7.5553 1.3097 39 1 3.4572 7.5506 2.7578 40 1 4.0693 9.7190 2.3194 41 1 3.0167 9.7242 0.8722 42 1 5.4972 9.8531 0.1776 43 1 0.8915 -2.5585 -0.5004 44 1 2.5848 -3.1071 -0.4974 45 1 0.7193 -5.9676 0.8812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415877600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:04 Heat of formation + Delta-G solvation = 71.998452 kcal Electronic energy + Delta-G solvation = -28126.098953 eV Core-core repulsion = 24144.601447 eV Total energy + Delta-G solvation = -3981.497506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.39659 -41.59144 -40.65089 -37.78425 -36.26848 -35.38913 -34.85126 -33.01895 -32.73045 -32.56592 -29.72838 -29.26322 -28.37657 -27.84995 -25.25771 -24.33985 -23.22375 -22.62564 -21.93708 -21.35574 -21.05727 -19.26942 -18.77808 -18.24030 -18.13787 -17.41598 -16.82909 -16.72214 -16.51114 -16.37736 -16.13581 -15.79311 -15.57824 -14.79067 -14.70372 -14.52279 -14.31590 -13.80318 -13.76065 -13.70314 -13.59484 -13.48147 -13.43282 -13.13276 -12.94164 -12.84974 -12.76505 -12.65103 -12.23713 -12.17185 -12.06112 -11.65477 -11.51877 -11.35701 -11.05215 -10.72180 -10.19295 -9.63957 -9.57105 -9.11052 -8.31595 -7.95328 -6.49004 0.49930 0.54446 1.00646 1.11335 1.38875 1.40497 1.49433 1.66482 2.05934 2.34084 2.36343 2.59614 2.95250 2.98019 3.08035 3.73811 3.84926 3.87497 4.16975 4.20094 4.30024 4.36838 4.44071 4.51432 4.61815 4.72711 4.73088 4.79159 4.84738 4.90502 4.98665 5.02325 5.10276 5.11115 5.15926 5.19595 5.23726 5.38563 5.54765 5.56227 5.63885 5.82392 5.84473 5.89890 5.97800 6.27714 6.30868 6.62203 6.72687 7.07425 7.10724 7.21605 7.37336 8.74176 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002031 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.909098 B =13784.954725 C =14199.726998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.296 4.296 4 C 0.292 3.708 5 N -0.631 5.631 6 C 0.710 3.290 7 O -0.583 6.583 8 N -0.658 5.658 9 C 0.095 3.905 10 C -0.091 4.091 11 C -0.164 4.164 12 C 0.173 3.827 13 C -0.175 4.175 14 C -0.081 4.081 15 C -0.090 4.090 16 C 0.121 3.879 17 N -0.744 5.744 18 N -0.358 5.358 19 N -0.343 5.343 20 C 0.275 3.725 21 C -0.553 4.553 22 H 0.049 0.951 23 C 0.022 3.978 24 N -0.918 5.918 25 Si 0.971 3.029 26 H -0.266 1.266 27 H -0.273 1.273 28 H -0.276 1.276 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.166 0.834 33 H 0.423 0.577 34 H 0.424 0.576 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.422 0.578 43 H 0.052 0.948 44 H 0.025 0.975 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.717 28.472 -1.039 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.327 4.327 4 C 0.037 3.963 5 N -0.283 5.283 6 C 0.410 3.590 7 O -0.459 6.459 8 N -0.308 5.308 9 C -0.001 4.001 10 C -0.112 4.112 11 C -0.187 4.187 12 C 0.069 3.931 13 C -0.180 4.180 14 C -0.102 4.102 15 C -0.127 4.127 16 C -0.003 4.003 17 N -0.378 5.378 18 N -0.188 5.188 19 N -0.125 5.125 20 C 0.156 3.844 21 C -0.591 4.591 22 H 0.067 0.933 23 C -0.179 4.179 24 N -0.556 5.556 25 Si 0.794 3.206 26 H -0.190 1.190 27 H -0.198 1.198 28 H -0.201 1.201 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.183 0.817 33 H 0.261 0.739 34 H 0.263 0.737 35 H 0.173 0.827 36 H 0.165 0.835 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.261 0.739 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.253 27.642 -1.008 29.167 hybrid contribution 0.470 -0.439 0.560 0.852 sum 9.723 27.203 -0.448 28.892 Atomic orbital electron populations 1.20462 0.85392 1.04169 1.03925 1.21727 0.96632 0.86442 0.99511 1.21389 0.89932 0.99864 1.21553 1.18891 0.87916 0.88885 1.00586 1.41286 1.07334 1.03480 1.76183 1.15736 0.85122 0.80226 0.77905 1.90860 1.24970 1.73527 1.56562 1.42129 1.08220 1.04224 1.76253 1.17228 1.00048 0.81070 1.01708 1.20738 0.99925 0.92253 0.98288 1.20382 0.99757 0.94580 1.03952 1.18580 0.94095 0.85731 0.94701 1.19942 1.00636 0.92505 1.04966 1.20302 0.98176 0.93804 0.97957 1.21119 0.97918 0.92976 1.00671 1.21849 0.87708 0.95969 0.94777 1.44770 1.33157 1.03260 1.56644 1.77173 1.00062 1.09631 1.31976 1.48761 1.01642 1.07487 1.54616 1.19242 0.94937 0.72407 0.97765 1.21404 1.47526 0.98375 0.91771 0.93255 1.25733 0.93990 0.95908 1.02242 1.69992 1.45042 1.07409 1.33139 0.85419 0.78726 0.77666 0.78757 1.19029 1.19754 1.20106 0.89831 0.87669 0.91241 0.81676 0.73926 0.73695 0.82715 0.83491 0.87306 0.90024 0.89417 0.89924 0.90359 0.73900 0.92981 0.95725 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 10.11 71.24 0.72 -2.06 16 2 C 0.09 3.75 6.92 41.39 0.29 4.04 16 3 C -0.30 -12.43 9.52 22.11 0.21 -12.22 16 4 C 0.29 12.09 8.11 133.32 1.08 13.17 16 5 N -0.63 -19.54 5.45 -321.22 -1.75 -21.29 16 6 C 0.71 21.24 8.28 179.05 1.48 22.73 16 7 O -0.58 -21.51 11.16 -4.05 -0.05 -21.55 16 8 N -0.66 -13.91 5.36 -317.04 -1.70 -15.61 16 9 C 0.09 2.12 6.29 38.08 0.24 2.36 16 10 C -0.09 -1.50 9.94 22.31 0.22 -1.28 16 11 C -0.16 -2.55 10.07 22.51 0.23 -2.32 16 12 C 0.17 3.15 7.03 38.28 0.27 3.42 16 13 C -0.18 -3.86 6.22 -19.64 -0.12 -3.99 16 14 C -0.08 -2.13 8.66 22.38 0.19 -1.94 16 15 C -0.09 -1.48 6.94 30.26 0.21 -1.27 16 16 C 0.12 1.35 7.96 86.62 0.69 2.04 16 17 N -0.74 -9.45 6.54 -337.59 -2.21 -11.65 16 18 N -0.36 -16.98 12.59 -54.44 -0.69 -17.67 16 19 N -0.34 -16.81 3.59 -338.46 -1.22 -18.02 16 20 C 0.28 14.70 5.99 85.63 0.51 15.21 16 21 C -0.55 -31.20 9.39 25.60 0.24 -30.96 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 23 C 0.02 1.23 5.46 84.66 0.46 1.69 16 24 N -0.92 -52.07 13.29 21.45 0.28 -51.79 16 25 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 29 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 31 H 0.07 2.41 7.07 -2.39 -0.02 2.39 16 32 H 0.17 6.78 5.91 -2.91 -0.02 6.76 16 33 H 0.42 10.08 8.84 -92.71 -0.82 9.26 16 34 H 0.42 5.52 8.84 -92.71 -0.82 4.70 16 35 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.11 3.40 6.41 -2.91 -0.02 3.39 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.42 3.23 8.96 -92.71 -0.83 2.40 16 43 H 0.05 2.75 7.04 -2.39 -0.02 2.73 16 44 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -74.92 378.02 0.23 -74.69 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -1.40 Total: 28.96 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.92 Total: 8.62 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -7.28 Total: -136.03 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.92 0.23 -74.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415877600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.686 kcal (2) G-P(sol) polarization free energy of solvation -74.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds