Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86796 * 119.99827 * 2 1 4 4 H 1.48501 * 109.47422 * 240.00086 * 3 2 1 5 5 H 1.48507 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46890 * 120.00307 * 3 2 1 7 7 C 1.38793 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99950 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00481 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00355 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47053 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00160 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00049 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00368 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47461 * 179.97438 * 14 13 11 16 16 N 1.46502 * 109.47503 * 179.97438 * 15 14 13 17 17 C 1.34773 * 120.00233 * 179.97438 * 16 15 14 18 18 O 1.21276 * 119.99968 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99872 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.68569 * 60.33308 * 19 17 16 21 21 C 1.53140 * 109.58083 * 300.00450 * 19 17 16 22 22 N 1.46910 * 109.38794 * 240.18324 * 21 19 17 23 23 C 1.46939 * 111.05790 * 298.03805 * 22 21 19 24 24 C 1.53123 * 109.37476 * 61.92318 * 23 22 21 25 25 C 1.53385 * 109.57931 * 180.66332 * 19 17 16 26 26 C 1.53392 * 108.60023 * 60.84197 * 25 19 17 27 27 C 1.46947 * 111.05441 * 62.00824 * 22 21 19 28 28 H 0.96998 * 120.00079 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46731 * 60.00165 * 10 9 7 30 30 H 1.09000 * 109.47273 * 300.00714 * 10 9 7 31 31 H 0.97001 * 119.99684 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.46961 * 59.99129 * 14 13 11 33 33 H 1.09003 * 109.46837 * 300.00064 * 14 13 11 34 34 H 1.09005 * 109.47288 * 59.99486 * 15 14 13 35 35 H 1.09003 * 109.47194 * 299.99902 * 15 14 13 36 36 H 0.96999 * 119.99595 * 0.02562 * 16 15 14 37 37 H 1.09002 * 109.48795 * 0.16503 * 21 19 17 38 38 H 1.09002 * 109.48975 * 120.20668 * 21 19 17 39 39 H 1.09000 * 109.47100 * 301.95637 * 23 22 21 40 40 H 1.08997 * 109.48943 * 181.90030 * 23 22 21 41 41 H 1.08999 * 109.57876 * 240.26440 * 24 23 22 42 42 H 1.09005 * 109.57528 * 119.87676 * 24 23 22 43 43 H 1.09005 * 110.11366 * 299.40724 * 25 19 17 44 44 H 1.08994 * 109.57888 * 178.81603 * 26 25 19 45 45 H 1.09003 * 109.57606 * 299.19860 * 26 25 19 46 46 H 1.09000 * 109.49004 * 58.00654 * 27 22 21 47 47 H 1.09000 * 109.48720 * 178.07606 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 2.3306 -7.7151 0.0008 15 6 3.5025 -8.6985 0.0009 16 7 2.9889 -10.0705 0.0016 17 6 3.8456 -11.1109 0.0013 18 8 5.0419 -10.9113 0.0009 19 6 3.3172 -12.5222 0.0025 20 1 2.7118 -12.6884 -0.8885 21 6 2.4627 -12.7491 1.2530 22 7 3.0466 -13.8348 2.0522 23 6 3.0570 -15.0971 1.3002 24 6 3.9277 -14.9370 0.0508 25 6 4.4902 -13.5103 0.0186 26 6 5.3082 -13.2779 1.2953 27 6 4.3983 -13.4850 2.5103 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7313 0.8895 30 1 3.1246 -3.7313 -0.8904 31 1 3.8010 -6.1835 0.0012 32 1 1.7223 -7.8753 -0.8894 33 1 1.7215 -7.8749 0.8905 34 1 4.1112 -8.5383 0.8909 35 1 4.1112 -8.5385 -0.8891 36 1 2.0321 -10.2301 0.0015 37 1 2.4360 -11.8349 1.8460 38 1 1.4494 -13.0202 0.9567 39 1 2.0395 -15.3521 1.0041 40 1 3.4633 -15.8907 1.9273 41 1 3.3242 -15.1118 -0.8398 42 1 4.7492 -15.6528 0.0840 43 1 5.1095 -13.3715 -0.8676 44 1 6.1352 -13.9869 1.3333 45 1 5.6973 -12.2597 1.2995 46 1 4.3576 -12.5658 3.0948 47 1 4.7932 -14.2918 3.1277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757918060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = -71.415130 kcal Electronic energy + Delta-G solvation = -26650.124607 eV Core-core repulsion = 22765.559421 eV Total energy + Delta-G solvation = -3884.565186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72580 -39.51270 -39.02272 -36.04887 -34.11110 -32.70327 -32.44614 -32.02999 -31.34675 -30.15386 -27.99670 -25.51180 -24.58177 -23.58216 -23.33016 -22.74845 -21.11415 -20.32947 -18.28104 -17.83511 -17.68674 -17.04309 -16.87850 -16.45005 -16.16788 -16.04235 -15.52412 -15.24412 -15.07681 -14.81751 -14.25086 -13.92698 -13.69594 -13.48005 -13.32186 -13.21245 -12.78823 -12.66320 -12.61545 -12.58627 -12.55796 -12.25114 -12.07148 -11.95440 -11.69378 -11.50569 -11.06640 -11.04936 -10.83297 -10.78675 -10.67466 -10.00310 -9.84938 -9.51987 -9.48800 -9.09327 -9.02359 -8.71185 -8.27541 -6.52827 -6.23403 -3.94538 2.22604 2.49542 3.00611 3.09792 3.22651 3.27129 3.32527 3.48197 3.71711 3.97903 4.11395 4.18724 4.32021 4.38895 4.51752 4.62265 4.67806 4.69883 4.77293 4.81723 4.88084 4.97433 5.08895 5.10176 5.11805 5.15505 5.26451 5.38233 5.46664 5.51568 5.54968 5.58570 5.64485 5.69557 5.70615 5.74116 5.85064 5.89733 6.05954 6.10329 6.45738 6.56425 6.57965 7.03698 7.56587 7.58451 7.80806 8.33237 8.50460 9.21872 10.83958 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037639 B = 0.001530 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.734301 B =18296.669333 C =18567.998666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.111 3.889 15 C 0.109 3.891 16 N -0.726 5.726 17 C 0.522 3.478 18 O -0.532 6.532 19 C -0.140 4.140 20 H 0.102 0.898 21 C 0.060 3.940 22 N -0.527 5.527 23 C 0.050 3.950 24 C -0.151 4.151 25 C -0.066 4.066 26 C -0.160 4.160 27 C 0.050 3.950 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.404 0.596 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.842 -31.642 1.123 32.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.393 5.393 14 C -0.014 4.014 15 C -0.015 4.015 16 N -0.379 5.379 17 C 0.308 3.692 18 O -0.409 6.409 19 C -0.164 4.164 20 H 0.120 0.880 21 C -0.069 4.069 22 N -0.247 5.247 23 C -0.078 4.078 24 C -0.190 4.190 25 C -0.085 4.085 26 C -0.199 4.199 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.239 0.761 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.207 -31.784 1.581 32.629 hybrid contribution 2.505 1.421 -0.870 3.008 sum 9.711 -30.362 0.711 31.886 Atomic orbital electron populations 1.70007 1.05951 1.27605 1.46721 1.24990 0.95035 0.99034 0.94476 0.86218 0.79233 0.81194 0.78816 1.19931 1.20792 1.19929 1.22829 0.94900 0.91623 1.59166 0.90926 1.85388 1.04815 0.96342 1.96745 1.23532 1.06699 0.95101 1.05105 1.20327 0.86428 0.86225 0.74963 1.90707 1.15340 1.85548 1.47346 1.45811 1.10248 1.04875 1.78341 1.21314 0.95531 0.81393 1.03145 1.21454 0.96332 0.80476 1.03255 1.45835 1.10402 1.05656 1.76026 1.20534 0.86533 0.86596 0.75502 1.90657 1.15473 1.85874 1.48863 1.22138 0.99664 0.92237 1.02315 0.88035 1.22275 0.97573 0.95723 0.91350 1.62512 1.21229 1.02906 1.38006 1.22241 1.00134 0.92031 0.93395 1.22313 1.00504 0.96598 0.99612 1.20902 0.95041 0.92959 0.99619 1.22480 0.98504 1.04637 0.94288 1.22266 0.87240 1.01744 0.96548 0.92104 0.89061 0.89065 0.76497 0.90964 0.90909 0.90678 0.90691 0.76141 0.89980 0.89444 0.90441 0.90453 0.91463 0.91165 0.89809 0.91849 0.88811 0.90755 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 12 O -0.52 -11.26 15.86 5.56 0.09 -11.17 16 13 N -0.74 -9.06 5.56 -60.30 -0.33 -9.39 16 14 C 0.11 1.11 5.79 -4.05 -0.02 1.08 16 15 C 0.11 0.89 5.79 -4.04 -0.02 0.87 16 16 N -0.73 -5.12 5.30 -60.30 -0.32 -5.44 16 17 C 0.52 4.48 6.60 -10.99 -0.07 4.40 16 18 O -0.53 -6.44 13.75 5.56 0.08 -6.36 16 19 C -0.14 -0.88 2.60 -91.50 -0.24 -1.11 16 20 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 21 C 0.06 0.35 5.60 -3.75 -0.02 0.32 16 22 N -0.53 -3.51 5.22 -234.24 -1.22 -4.74 16 23 C 0.05 0.26 6.09 -3.74 -0.02 0.24 16 24 C -0.15 -0.78 5.75 -26.46 -0.15 -0.93 16 25 C -0.07 -0.45 2.59 -90.01 -0.23 -0.69 16 26 C -0.16 -1.23 5.43 -26.42 -0.14 -1.38 16 27 C 0.05 0.35 6.10 -3.69 -0.02 0.33 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 31 H 0.40 3.82 8.47 -40.82 -0.35 3.48 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 1.96 8.38 -40.82 -0.34 1.62 16 37 H 0.08 0.51 7.45 -51.93 -0.39 0.13 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.68 8.12 -51.93 -0.42 0.25 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.95 5.59 -51.93 -0.29 0.66 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -35.74 387.95 -10.66 -46.40 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.67 Total: 0.73 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.62 Total: -3.07 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -1.14 Total: -44.81 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.16 Total: -17.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.74 -10.66 -46.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.018 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds