Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86796 * 119.99827 * 2 1 4 4 H 1.48501 * 109.47422 * 240.00086 * 3 2 1 5 5 H 1.48507 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46890 * 120.00307 * 3 2 1 7 7 C 1.38793 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99950 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00481 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00355 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47053 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00160 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00049 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00368 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47461 * 179.97438 * 14 13 11 16 16 N 1.46502 * 109.47503 * 179.97438 * 15 14 13 17 17 C 1.34773 * 120.00233 * 179.97438 * 16 15 14 18 18 O 1.21276 * 119.99968 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99872 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.68569 * 60.33308 * 19 17 16 21 21 C 1.53140 * 109.58083 * 300.00450 * 19 17 16 22 22 N 1.46910 * 109.38794 * 240.18324 * 21 19 17 23 23 C 1.46939 * 111.05790 * 298.03805 * 22 21 19 24 24 C 1.53123 * 109.37476 * 61.92318 * 23 22 21 25 25 C 1.53385 * 109.57931 * 180.66332 * 19 17 16 26 26 C 1.53392 * 108.60023 * 60.84197 * 25 19 17 27 27 C 1.46947 * 111.05441 * 62.00824 * 22 21 19 28 28 H 0.96998 * 120.00079 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46731 * 60.00165 * 10 9 7 30 30 H 1.09000 * 109.47273 * 300.00714 * 10 9 7 31 31 H 0.97001 * 119.99684 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.46961 * 59.99129 * 14 13 11 33 33 H 1.09003 * 109.46837 * 300.00064 * 14 13 11 34 34 H 1.09005 * 109.47288 * 59.99486 * 15 14 13 35 35 H 1.09003 * 109.47194 * 299.99902 * 15 14 13 36 36 H 0.96999 * 119.99595 * 0.02562 * 16 15 14 37 37 H 1.09002 * 109.48795 * 0.16503 * 21 19 17 38 38 H 1.09002 * 109.48975 * 120.20668 * 21 19 17 39 39 H 1.09000 * 109.47100 * 301.95637 * 23 22 21 40 40 H 1.08997 * 109.48943 * 181.90030 * 23 22 21 41 41 H 1.08999 * 109.57876 * 240.26440 * 24 23 22 42 42 H 1.09005 * 109.57528 * 119.87676 * 24 23 22 43 43 H 1.09005 * 110.11366 * 299.40724 * 25 19 17 44 44 H 1.08994 * 109.57888 * 178.81603 * 26 25 19 45 45 H 1.09003 * 109.57606 * 299.19860 * 26 25 19 46 46 H 1.09000 * 109.49004 * 58.00654 * 27 22 21 47 47 H 1.09000 * 109.48720 * 178.07606 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 2.3306 -7.7151 0.0008 15 6 3.5025 -8.6985 0.0009 16 7 2.9889 -10.0705 0.0016 17 6 3.8456 -11.1109 0.0013 18 8 5.0419 -10.9113 0.0009 19 6 3.3172 -12.5222 0.0025 20 1 2.7118 -12.6884 -0.8885 21 6 2.4627 -12.7491 1.2530 22 7 3.0466 -13.8348 2.0522 23 6 3.0570 -15.0971 1.3002 24 6 3.9277 -14.9370 0.0508 25 6 4.4902 -13.5103 0.0186 26 6 5.3082 -13.2779 1.2953 27 6 4.3983 -13.4850 2.5103 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7313 0.8895 30 1 3.1246 -3.7313 -0.8904 31 1 3.8010 -6.1835 0.0012 32 1 1.7223 -7.8753 -0.8894 33 1 1.7215 -7.8749 0.8905 34 1 4.1112 -8.5383 0.8909 35 1 4.1112 -8.5385 -0.8891 36 1 2.0321 -10.2301 0.0015 37 1 2.4360 -11.8349 1.8460 38 1 1.4494 -13.0202 0.9567 39 1 2.0395 -15.3521 1.0041 40 1 3.4633 -15.8907 1.9273 41 1 3.3242 -15.1118 -0.8398 42 1 4.7492 -15.6528 0.0840 43 1 5.1095 -13.3715 -0.8676 44 1 6.1352 -13.9869 1.3333 45 1 5.6973 -12.2597 1.2995 46 1 4.3576 -12.5658 3.0948 47 1 4.7932 -14.2918 3.1277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757918060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = -99.562546 kcal Electronic energy + Delta-G solvation = -26651.345170 eV Core-core repulsion = 22765.559421 eV Total energy + Delta-G solvation = -3885.785749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.27931 -40.69613 -39.86596 -36.98693 -35.12622 -34.57929 -33.23532 -32.65332 -31.84310 -31.39836 -29.08604 -27.64039 -25.21865 -24.10232 -23.82214 -23.50376 -22.07166 -21.36698 -19.88055 -18.78542 -18.25342 -17.95574 -17.52791 -17.32692 -17.15984 -16.97244 -16.87269 -16.57020 -16.11655 -15.92333 -15.64801 -15.18555 -14.72279 -14.42578 -14.32025 -13.94391 -13.88296 -13.69920 -13.19825 -13.16834 -13.14345 -13.07891 -13.07086 -12.88306 -12.86991 -12.73222 -12.61601 -12.49741 -12.02411 -11.75002 -11.38346 -11.13197 -11.12710 -11.05558 -10.62908 -10.28446 -10.24577 -10.12845 -9.21312 -8.66303 -8.34418 -6.12434 1.24569 1.44100 1.44906 1.54671 1.56289 1.57983 1.87325 2.27607 2.53868 2.99747 3.01498 3.31866 3.45451 3.57304 3.66046 3.83104 3.98584 3.99504 4.02601 4.07476 4.21647 4.27981 4.30537 4.32783 4.36485 4.40017 4.48363 4.51993 4.63272 4.80095 4.81590 4.83823 4.96633 5.01293 5.08114 5.13745 5.18911 5.20540 5.24818 5.36022 5.42111 5.45329 6.07279 6.13010 6.19861 6.40470 6.47291 7.07006 7.16911 7.19234 8.74437 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037639 B = 0.001530 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.734301 B =18296.669333 C =18567.998666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.713 5.713 14 C 0.116 3.884 15 C 0.121 3.879 16 N -0.717 5.717 17 C 0.519 3.481 18 O -0.571 6.571 19 C -0.133 4.133 20 H 0.123 0.877 21 C 0.061 3.939 22 N -0.536 5.536 23 C 0.050 3.950 24 C -0.144 4.144 25 C -0.069 4.069 26 C -0.157 4.157 27 C 0.053 3.947 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.418 0.582 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.417 0.583 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 -32.772 0.910 34.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.283 4.283 11 C 0.323 3.677 12 O -0.439 6.439 13 N -0.368 5.368 14 C -0.008 4.008 15 C -0.004 4.004 16 N -0.370 5.370 17 C 0.307 3.693 18 O -0.450 6.450 19 C -0.156 4.156 20 H 0.141 0.859 21 C -0.068 4.068 22 N -0.255 5.255 23 C -0.078 4.078 24 C -0.183 4.183 25 C -0.089 4.089 26 C -0.196 4.196 27 C -0.075 4.075 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.255 0.745 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.267 -32.957 1.369 34.005 hybrid contribution 2.249 1.638 -0.793 2.893 sum 10.516 -31.319 0.576 33.042 Atomic orbital electron populations 1.70172 1.07921 1.28675 1.47906 1.26106 0.95958 1.03258 0.93722 0.85020 0.77819 0.75800 0.79457 1.18715 1.20386 1.18730 1.23185 0.95382 0.92080 1.59005 0.89907 1.85536 1.10424 0.99147 1.97068 1.23381 1.03666 0.94285 1.06960 1.19994 0.86133 0.86536 0.74998 1.90698 1.17254 1.86021 1.49958 1.45524 1.10560 1.04758 1.75919 1.21380 0.96160 0.80070 1.03233 1.21249 0.95327 0.80617 1.03170 1.45744 1.11062 1.04943 1.75276 1.20988 0.86059 0.87636 0.74603 1.90652 1.17186 1.86475 1.50702 1.22150 0.99586 0.90273 1.03577 0.85898 1.22335 0.98351 0.95365 0.90748 1.62529 1.20641 1.03696 1.38683 1.22318 1.00923 0.91366 0.93215 1.22264 1.00670 0.95131 1.00202 1.20903 0.95120 0.94486 0.98386 1.22400 0.98899 1.02953 0.95359 1.22204 0.87647 1.01497 0.96156 0.91982 0.87109 0.87093 0.74516 0.90872 0.90874 0.90842 0.90768 0.74641 0.90708 0.87323 0.89114 0.90134 0.90207 0.91003 0.91300 0.91763 0.91488 0.91867 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.50 13.22 21.65 0.29 -55.21 16 2 C 0.01 0.82 5.49 84.85 0.47 1.28 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.55 -31.03 9.50 67.95 0.65 -30.39 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 10 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 11 C 0.54 18.69 7.85 87.66 0.69 19.38 16 12 O -0.56 -24.66 15.86 -3.02 -0.05 -24.71 16 13 N -0.71 -16.16 5.56 -463.08 -2.57 -18.73 16 14 C 0.12 2.11 5.79 86.38 0.50 2.61 16 15 C 0.12 1.78 5.79 86.38 0.50 2.28 16 16 N -0.72 -8.98 5.30 -463.07 -2.45 -11.43 16 17 C 0.52 8.41 6.60 87.66 0.58 8.99 16 18 O -0.57 -13.81 13.75 -3.02 -0.04 -13.85 16 19 C -0.13 -1.44 2.60 -11.36 -0.03 -1.47 16 20 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 21 C 0.06 0.58 5.60 86.35 0.48 1.06 16 22 N -0.54 -6.23 5.22 -895.01 -4.67 -10.90 16 23 C 0.05 0.41 6.09 86.34 0.53 0.93 16 24 C -0.14 -1.19 5.75 30.77 0.18 -1.02 16 25 C -0.07 -0.89 2.59 -10.40 -0.03 -0.92 16 26 C -0.16 -2.42 5.43 30.79 0.17 -2.25 16 27 C 0.05 0.72 6.10 86.36 0.53 1.25 16 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 30 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 31 H 0.42 6.87 8.47 -92.71 -0.79 6.09 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.42 3.17 8.38 -92.71 -0.78 2.39 16 37 H 0.07 0.83 7.45 -2.39 -0.02 0.81 16 38 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.07 1.09 8.12 -2.38 -0.02 1.07 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 1.42 5.59 -2.39 -0.01 1.41 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -79.78 387.95 -3.57 -83.36 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.58 Total: 18.34 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.64 Total: -2.85 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -9.41 Total: -96.28 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.09 Total: -38.56 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -79.78 -3.57 -83.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.204 kcal (2) G-P(sol) polarization free energy of solvation -79.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds