Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00183 * 2 1 4 4 H 1.48497 * 109.47281 * 270.00087 * 3 2 1 5 5 H 1.48496 * 109.46857 * 30.00277 * 3 2 1 6 6 H 1.48503 * 109.47108 * 150.00210 * 3 2 1 7 7 C 1.38806 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99929 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99701 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99956 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99966 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47337 * 179.97438 * 14 13 11 16 16 N 1.46494 * 109.47001 * 180.02562 * 15 14 13 17 17 C 1.34784 * 119.99635 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99961 * 180.02562 * 17 16 15 20 20 H 1.09011 * 109.57681 * 299.99927 * 19 17 16 21 21 C 1.53137 * 109.58112 * 60.25858 * 19 17 16 22 22 N 1.47181 * 109.22227 * 119.76705 * 21 19 17 23 23 C 1.46948 * 111.01373 * 62.10939 * 22 21 19 24 24 C 1.53122 * 109.34947 * 297.96554 * 23 22 21 25 25 C 1.53379 * 109.57876 * 179.73848 * 19 17 16 26 26 C 1.53392 * 108.59861 * 299.94592 * 25 19 17 27 27 C 1.46941 * 111.13281 * 298.08282 * 22 21 19 28 28 H 0.96995 * 119.99792 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47275 * 59.99813 * 10 9 7 30 30 H 1.09002 * 109.46848 * 300.00382 * 10 9 7 31 31 H 0.96999 * 120.00050 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.47136 * 59.99929 * 14 13 11 33 33 H 1.08996 * 109.47174 * 300.00587 * 14 13 11 34 34 H 1.09005 * 109.46767 * 60.00068 * 15 14 13 35 35 H 1.09002 * 109.47113 * 300.00408 * 15 14 13 36 36 H 0.96995 * 120.00292 * 0.27801 * 16 15 14 37 37 H 1.08994 * 109.49298 * 239.78806 * 21 19 17 38 38 H 1.09010 * 109.48489 * 359.85172 * 21 19 17 39 39 H 1.09002 * 109.48778 * 178.00294 * 23 22 21 40 40 H 1.08996 * 109.50920 * 57.94161 * 23 22 21 41 41 H 1.09004 * 109.57377 * 240.13862 * 24 23 22 42 42 H 1.09008 * 109.67859 * 119.82330 * 24 23 22 43 43 H 1.08994 * 110.11488 * 60.58523 * 25 19 17 44 44 H 1.08997 * 109.57574 * 60.80129 * 26 25 19 45 45 H 1.08996 * 109.57942 * 181.18856 * 26 25 19 46 46 H 1.09004 * 109.49138 * 181.91625 * 27 22 21 47 47 H 1.08992 * 109.49130 * 301.97190 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2022 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5730 -3.2327 -0.0026 12 8 6.3440 -2.2964 -0.0024 13 7 6.0456 -4.4948 -0.0041 14 6 7.4906 -4.7360 -0.0048 15 6 7.7563 -6.2427 -0.0057 16 7 9.2013 -6.4838 -0.0058 17 6 9.6739 -7.7460 -0.0071 18 8 8.9029 -8.6822 -0.0078 19 6 11.1603 -7.9941 -0.0066 20 1 11.6056 -7.5465 -0.8953 21 6 11.7836 -7.3741 1.2473 22 7 12.4306 -8.4318 2.0404 23 6 13.5196 -9.0659 1.2845 24 6 12.9462 -9.7305 0.0298 25 6 11.4294 -9.5041 -0.0018 26 6 10.8011 -10.1089 1.2600 27 6 11.4513 -9.4308 2.4901 28 1 -0.4849 0.8400 0.0004 29 1 3.6433 -3.4311 -0.8926 30 1 3.6439 -3.4322 0.8873 31 1 5.4290 -5.2436 -0.0047 32 1 7.9338 -4.2898 0.8856 33 1 7.9333 -4.2880 -0.8943 34 1 7.3130 -6.6892 -0.8959 35 1 7.3136 -6.6903 0.8841 36 1 9.8179 -5.7350 -0.0012 37 1 12.5252 -6.6307 0.9553 38 1 11.0049 -6.8971 1.8426 39 1 14.0034 -9.8191 1.9063 40 1 14.2495 -8.3101 0.9945 41 1 13.1554 -10.8000 0.0551 42 1 13.3997 -9.2906 -0.8585 43 1 11.0002 -9.9642 -0.8917 44 1 9.7248 -9.9368 1.2505 45 1 11.0012 -11.1799 1.2903 46 1 11.9521 -10.1812 3.1019 47 1 10.6756 -8.9406 3.0782 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757918061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = -70.828844 kcal Electronic energy + Delta-G solvation = -26696.419179 eV Core-core repulsion = 22811.879417 eV Total energy + Delta-G solvation = -3884.539762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70731 -39.58039 -39.08547 -36.11530 -34.19014 -32.72182 -32.46099 -32.04717 -31.28288 -30.26601 -28.09092 -25.64234 -24.62171 -23.58598 -23.38408 -22.80423 -21.17079 -20.42707 -18.33504 -17.86444 -17.69812 -17.06263 -16.88927 -16.52914 -16.22840 -16.10024 -15.59209 -15.29564 -15.15587 -14.96895 -14.33001 -13.86119 -13.69690 -13.48769 -13.37297 -13.32085 -12.83272 -12.81781 -12.68136 -12.61023 -12.60119 -12.30297 -12.14185 -11.94831 -11.79470 -11.53901 -11.29344 -11.02961 -10.87881 -10.70122 -10.64752 -10.02767 -9.88136 -9.64151 -9.52626 -9.14826 -9.01896 -8.72697 -8.53952 -6.95159 -6.30976 -4.03309 2.19342 2.41178 2.84040 2.87249 3.30593 3.36045 3.45736 3.48278 3.64664 3.95911 4.08835 4.28041 4.30964 4.34276 4.48680 4.60108 4.65704 4.66300 4.70317 4.72081 4.78635 4.85911 4.95549 5.07313 5.08033 5.08917 5.23575 5.24468 5.36560 5.44584 5.50143 5.52337 5.60344 5.62862 5.67931 5.70884 5.72274 5.86071 5.97082 6.04983 6.35700 6.53667 6.55847 6.99867 7.46410 7.77629 7.91998 8.36983 8.39756 9.14972 10.78219 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036766 B = 0.001583 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.398719 B =17678.694120 C =17985.598105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.111 3.889 15 C 0.109 3.891 16 N -0.727 5.727 17 C 0.522 3.478 18 O -0.531 6.531 19 C -0.140 4.140 20 H 0.101 0.899 21 C 0.060 3.940 22 N -0.527 5.527 23 C 0.050 3.950 24 C -0.150 4.150 25 C -0.067 4.067 26 C -0.161 4.161 27 C 0.050 3.950 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.403 0.597 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.404 0.596 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.741 -21.321 1.178 35.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.390 5.390 14 C -0.014 4.014 15 C -0.016 4.016 16 N -0.380 5.380 17 C 0.308 3.692 18 O -0.408 6.408 19 C -0.163 4.163 20 H 0.119 0.881 21 C -0.069 4.069 22 N -0.246 5.246 23 C -0.078 4.078 24 C -0.190 4.190 25 C -0.087 4.087 26 C -0.199 4.199 27 C -0.079 4.079 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.237 0.763 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.238 0.762 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 28.511 -20.088 1.636 34.915 hybrid contribution -1.230 -0.711 -0.912 1.688 sum 27.282 -20.798 0.724 34.313 Atomic orbital electron populations 1.69938 1.05911 1.27788 1.47951 1.24717 0.94457 0.98969 0.93156 0.86731 0.81878 0.83282 0.79927 1.19209 1.19910 1.15942 1.22315 0.88200 0.97579 1.58915 0.89338 1.84783 1.09396 0.99878 1.97444 1.23277 0.93672 1.04549 1.06003 1.20298 0.90727 0.81986 0.75056 1.90707 1.58777 1.42127 1.47574 1.45762 1.06750 1.08457 1.78068 1.21327 0.82826 0.94035 1.03171 1.21453 0.81380 0.95380 1.03343 1.45831 1.07790 1.08238 1.76101 1.20549 0.90773 0.82362 0.75484 1.90653 1.59171 1.42136 1.48803 1.22133 0.92646 0.99261 1.02274 0.88072 1.22320 0.98860 0.94373 0.91348 1.62580 1.11131 1.12575 1.38341 1.22240 0.93652 0.98594 0.93309 1.22297 0.95250 1.01842 0.99574 1.20905 0.95227 0.92666 0.99857 1.22803 1.03064 0.99862 0.94218 1.22539 0.94510 0.94310 0.96515 0.91916 0.88333 0.88286 0.76311 0.90872 0.90906 0.90622 0.90626 0.76161 0.89435 0.89993 0.90441 0.90451 0.91171 0.91443 0.89933 0.88481 0.91915 0.90522 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.97 55.49 0.78 -25.59 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.58 27.74 -169.99 -4.71 16.86 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 7 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 11 C 0.53 8.95 7.85 -10.99 -0.09 8.87 16 12 O -0.52 -10.64 15.86 5.55 0.09 -10.55 16 13 N -0.73 -8.45 5.56 -60.29 -0.33 -8.78 16 14 C 0.11 1.03 5.79 -4.04 -0.02 1.01 16 15 C 0.11 0.84 5.79 -4.04 -0.02 0.81 16 16 N -0.73 -4.82 5.31 -60.29 -0.32 -5.14 16 17 C 0.52 4.32 6.60 -10.98 -0.07 4.24 16 18 O -0.53 -6.27 13.67 5.56 0.08 -6.20 16 19 C -0.14 -0.84 2.59 -91.50 -0.24 -1.08 16 20 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 21 C 0.06 0.33 5.63 -3.60 -0.02 0.31 16 22 N -0.53 -3.41 5.22 -232.98 -1.22 -4.63 16 23 C 0.05 0.26 6.09 -3.73 -0.02 0.23 16 24 C -0.15 -0.75 5.77 -26.47 -0.15 -0.91 16 25 C -0.07 -0.45 2.56 -90.02 -0.23 -0.68 16 26 C -0.16 -1.21 5.56 -25.59 -0.14 -1.36 16 27 C 0.05 0.34 6.14 -2.86 -0.02 0.32 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.40 3.56 8.47 -40.82 -0.35 3.22 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 1.78 8.38 -40.82 -0.34 1.43 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.49 7.46 -51.92 -0.39 0.10 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 43 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.10 0.97 5.50 -51.93 -0.29 0.68 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -35.43 385.30 -10.13 -45.56 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.70 Total: 0.41 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.59 Total: -2.23 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -1.10 Total: -44.14 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.16 Total: -16.75 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.43 -10.13 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.267 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds