Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00183 * 2 1 4 4 H 1.48497 * 109.47281 * 270.00087 * 3 2 1 5 5 H 1.48496 * 109.46857 * 30.00277 * 3 2 1 6 6 H 1.48503 * 109.47108 * 150.00210 * 3 2 1 7 7 C 1.38806 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99929 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99701 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99956 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99966 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47337 * 179.97438 * 14 13 11 16 16 N 1.46494 * 109.47001 * 180.02562 * 15 14 13 17 17 C 1.34784 * 119.99635 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99961 * 180.02562 * 17 16 15 20 20 H 1.09011 * 109.57681 * 299.99927 * 19 17 16 21 21 C 1.53137 * 109.58112 * 60.25858 * 19 17 16 22 22 N 1.47181 * 109.22227 * 119.76705 * 21 19 17 23 23 C 1.46948 * 111.01373 * 62.10939 * 22 21 19 24 24 C 1.53122 * 109.34947 * 297.96554 * 23 22 21 25 25 C 1.53379 * 109.57876 * 179.73848 * 19 17 16 26 26 C 1.53392 * 108.59861 * 299.94592 * 25 19 17 27 27 C 1.46941 * 111.13281 * 298.08282 * 22 21 19 28 28 H 0.96995 * 119.99792 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47275 * 59.99813 * 10 9 7 30 30 H 1.09002 * 109.46848 * 300.00382 * 10 9 7 31 31 H 0.96999 * 120.00050 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.47136 * 59.99929 * 14 13 11 33 33 H 1.08996 * 109.47174 * 300.00587 * 14 13 11 34 34 H 1.09005 * 109.46767 * 60.00068 * 15 14 13 35 35 H 1.09002 * 109.47113 * 300.00408 * 15 14 13 36 36 H 0.96995 * 120.00292 * 0.27801 * 16 15 14 37 37 H 1.08994 * 109.49298 * 239.78806 * 21 19 17 38 38 H 1.09010 * 109.48489 * 359.85172 * 21 19 17 39 39 H 1.09002 * 109.48778 * 178.00294 * 23 22 21 40 40 H 1.08996 * 109.50920 * 57.94161 * 23 22 21 41 41 H 1.09004 * 109.57377 * 240.13862 * 24 23 22 42 42 H 1.09008 * 109.67859 * 119.82330 * 24 23 22 43 43 H 1.08994 * 110.11488 * 60.58523 * 25 19 17 44 44 H 1.08997 * 109.57574 * 60.80129 * 26 25 19 45 45 H 1.08996 * 109.57942 * 181.18856 * 26 25 19 46 46 H 1.09004 * 109.49138 * 181.91625 * 27 22 21 47 47 H 1.08992 * 109.49130 * 301.97190 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2022 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5730 -3.2327 -0.0026 12 8 6.3440 -2.2964 -0.0024 13 7 6.0456 -4.4948 -0.0041 14 6 7.4906 -4.7360 -0.0048 15 6 7.7563 -6.2427 -0.0057 16 7 9.2013 -6.4838 -0.0058 17 6 9.6739 -7.7460 -0.0071 18 8 8.9029 -8.6822 -0.0078 19 6 11.1603 -7.9941 -0.0066 20 1 11.6056 -7.5465 -0.8953 21 6 11.7836 -7.3741 1.2473 22 7 12.4306 -8.4318 2.0404 23 6 13.5196 -9.0659 1.2845 24 6 12.9462 -9.7305 0.0298 25 6 11.4294 -9.5041 -0.0018 26 6 10.8011 -10.1089 1.2600 27 6 11.4513 -9.4308 2.4901 28 1 -0.4849 0.8400 0.0004 29 1 3.6433 -3.4311 -0.8926 30 1 3.6439 -3.4322 0.8873 31 1 5.4290 -5.2436 -0.0047 32 1 7.9338 -4.2898 0.8856 33 1 7.9333 -4.2880 -0.8943 34 1 7.3130 -6.6892 -0.8959 35 1 7.3136 -6.6903 0.8841 36 1 9.8179 -5.7350 -0.0012 37 1 12.5252 -6.6307 0.9553 38 1 11.0049 -6.8971 1.8426 39 1 14.0034 -9.8191 1.9063 40 1 14.2495 -8.3101 0.9945 41 1 13.1554 -10.8000 0.0551 42 1 13.3997 -9.2906 -0.8585 43 1 11.0002 -9.9642 -0.8917 44 1 9.7248 -9.9368 1.2505 45 1 11.0012 -11.1799 1.2903 46 1 11.9521 -10.1812 3.1019 47 1 10.6756 -8.9406 3.0782 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757918061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = -98.869689 kcal Electronic energy + Delta-G solvation = -26697.635121 eV Core-core repulsion = 22811.879417 eV Total energy + Delta-G solvation = -3885.755705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24071 -40.73194 -39.84565 -37.00019 -35.14346 -34.66945 -33.23428 -32.64194 -31.77110 -31.44311 -29.10688 -27.84074 -25.22385 -24.08826 -23.86066 -23.50533 -22.10268 -21.37972 -19.93845 -18.80375 -18.24672 -18.00246 -17.52141 -17.32634 -17.23582 -17.02265 -16.98552 -16.55012 -16.14162 -15.93872 -15.54350 -15.20354 -14.92712 -14.67413 -14.34430 -13.93045 -13.90488 -13.73924 -13.34476 -13.20807 -13.13715 -13.08636 -13.06855 -12.99537 -12.90306 -12.73330 -12.62566 -12.46986 -12.03735 -11.86669 -11.40835 -11.16926 -11.14613 -11.09780 -10.62430 -10.54211 -10.26063 -10.13338 -9.20995 -8.99489 -8.51376 -6.22396 0.97582 1.32036 1.45221 1.52642 1.53042 1.56373 1.85942 2.25043 2.48295 2.73597 2.86944 3.01023 3.45407 3.56302 3.66261 3.81967 3.89137 3.98281 4.01122 4.08705 4.19638 4.23534 4.27721 4.31883 4.36757 4.40135 4.47892 4.48510 4.63432 4.80112 4.81755 4.83436 4.96391 5.00801 5.07859 5.13327 5.18015 5.20363 5.23618 5.34567 5.46424 5.70655 6.06758 6.11691 6.12329 6.37072 6.46534 6.93653 7.12689 7.18230 8.60987 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036766 B = 0.001583 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.398719 B =17678.694120 C =17985.598105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.235 1.235 7 C -0.531 4.531 8 H 0.062 0.938 9 S -0.173 6.173 10 C -0.114 4.114 11 C 0.539 3.461 12 O -0.558 6.558 13 N -0.712 5.712 14 C 0.117 3.883 15 C 0.120 3.880 16 N -0.717 5.717 17 C 0.519 3.481 18 O -0.571 6.571 19 C -0.133 4.133 20 H 0.123 0.877 21 C 0.061 3.939 22 N -0.535 5.535 23 C 0.050 3.950 24 C -0.143 4.143 25 C -0.070 4.070 26 C -0.158 4.158 27 C 0.053 3.947 28 H 0.277 0.723 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.418 0.582 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.417 0.583 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.370 -21.409 0.985 37.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.159 1.159 7 C -0.679 4.679 8 H 0.080 0.920 9 S 0.053 5.947 10 C -0.264 4.264 11 C 0.325 3.675 12 O -0.436 6.436 13 N -0.367 5.367 14 C -0.008 4.008 15 C -0.005 4.005 16 N -0.370 5.370 17 C 0.307 3.693 18 O -0.450 6.450 19 C -0.155 4.155 20 H 0.141 0.859 21 C -0.068 4.068 22 N -0.255 5.255 23 C -0.078 4.078 24 C -0.182 4.182 25 C -0.090 4.090 26 C -0.197 4.197 27 C -0.075 4.075 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.254 0.746 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 31.155 -20.207 1.445 37.163 hybrid contribution -2.035 -0.881 -0.847 2.374 sum 29.120 -21.089 0.598 35.959 Atomic orbital electron populations 1.70019 1.07358 1.29030 1.49100 1.25587 0.95279 1.02328 0.92861 0.85851 0.80702 0.79497 0.80225 1.18676 1.18421 1.15910 1.22479 0.90359 0.96691 1.58326 0.92002 1.84667 1.06313 1.06078 1.97598 1.23278 0.95842 0.99711 1.07614 1.19874 0.89402 0.83093 0.75161 1.90699 1.59206 1.43687 1.50038 1.45513 1.08325 1.07130 1.75699 1.21395 0.80961 0.95000 1.03418 1.21260 0.82113 0.93983 1.03156 1.45731 1.07569 1.08399 1.75292 1.20999 0.91622 0.82103 0.74605 1.90649 1.60290 1.43389 1.50679 1.22143 0.90942 0.98895 1.03567 0.85903 1.22388 0.99234 0.94431 0.90718 1.62595 1.11232 1.12652 1.39044 1.22314 0.93343 0.99054 0.93090 1.22250 0.93662 1.02120 1.00195 1.20903 0.96433 0.93114 0.98550 1.22716 1.01540 1.00110 0.95367 1.22475 0.94469 0.94520 0.96071 0.91384 0.86750 0.86728 0.74483 0.90652 0.90638 0.90824 0.90901 0.74598 0.87230 0.90650 0.90176 0.89067 0.91091 0.90160 0.91497 0.91140 0.91927 0.89905 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.60 13.97 21.65 0.30 -55.29 16 2 C 0.04 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.92 44.49 27.74 68.60 1.90 46.39 16 4 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.35 6.74 99.48 0.67 -10.68 16 7 C -0.53 -30.61 10.04 67.96 0.68 -29.93 16 8 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 9 S -0.17 -8.54 18.55 -56.49 -1.05 -9.59 16 10 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 11 C 0.54 17.15 7.85 87.66 0.69 17.84 16 12 O -0.56 -22.23 15.86 -3.04 -0.05 -22.28 16 13 N -0.71 -14.72 5.56 -463.06 -2.57 -17.30 16 14 C 0.12 1.89 5.79 86.38 0.50 2.39 16 15 C 0.12 1.62 5.79 86.38 0.50 2.12 16 16 N -0.72 -8.19 5.31 -463.05 -2.46 -10.65 16 17 C 0.52 8.02 6.60 87.66 0.58 8.60 16 18 O -0.57 -13.49 13.67 -3.03 -0.04 -13.53 16 19 C -0.13 -1.35 2.59 -11.37 -0.03 -1.37 16 20 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 21 C 0.06 0.54 5.63 86.30 0.49 1.02 16 22 N -0.54 -5.95 5.22 -891.00 -4.65 -10.60 16 23 C 0.05 0.39 6.09 86.33 0.53 0.91 16 24 C -0.14 -1.14 5.77 30.77 0.18 -0.96 16 25 C -0.07 -0.88 2.56 -10.40 -0.03 -0.91 16 26 C -0.16 -2.40 5.56 31.33 0.17 -2.23 16 27 C 0.05 0.70 6.14 86.90 0.53 1.23 16 28 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 30 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.42 6.30 8.47 -92.71 -0.79 5.51 16 32 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.42 2.62 8.38 -92.71 -0.78 1.85 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.76 7.46 -2.38 -0.02 0.75 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 44 H 0.07 1.48 5.50 -2.39 -0.01 1.47 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.55 385.30 -3.54 -81.09 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.61 Total: 13.62 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.70 Total: -1.85 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -9.38 Total: -93.84 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.09 Total: -35.82 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.05 Total: -9.59 kcal Total: -77.55 -3.54 -81.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.782 kcal (2) G-P(sol) polarization free energy of solvation -77.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds