Wall clock time and date at job start Sat Apr 11 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39869 * 126.03632 * 2 1 4 4 N 1.30842 * 108.20351 * 180.02562 * 3 2 1 5 5 N 1.40081 * 108.20257 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.03781 * 180.02562 * 5 4 3 7 7 H 1.09004 * 110.91662 * 22.56580 * 6 5 4 8 8 C 1.55442 * 111.11322 * 258.58155 * 6 5 4 9 9 C 1.54331 * 102.96882 * 206.46059 * 8 6 5 10 10 N 1.47020 * 107.26993 * 22.18955 * 9 8 6 11 11 C 1.34771 * 125.65246 * 181.08138 * 10 9 8 12 12 O 1.21575 * 120.00629 * 179.97438 * 11 10 9 13 13 N 1.34775 * 119.99710 * 359.97438 * 11 10 9 14 14 C 1.39252 * 120.00219 * 174.85020 * 13 11 10 15 15 C 1.39681 * 119.57789 * 185.39619 * 14 13 11 16 16 C 1.38641 * 119.49690 * 179.75145 * 15 14 13 17 17 C 1.38357 * 118.66963 * 0.50651 * 16 15 14 18 18 C 1.40574 * 119.13023 * 359.73367 * 17 16 15 19 19 C 1.41332 * 119.78591 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00423 * 0.02562 * 19 18 17 21 21 C 1.40032 * 119.99839 * 180.02562 * 19 18 17 22 22 N 1.30743 * 119.99820 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47333 * 60.00062 * 23 21 19 25 25 H 1.48498 * 109.47204 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46770 * 299.99983 * 23 21 19 27 27 N 1.31902 * 119.57070 * 5.65891 * 14 13 11 28 28 C 1.47434 * 108.70196 * 1.06258 * 10 9 8 29 29 C 1.34944 * 107.92812 * 0.25945 * 5 4 3 30 30 H 1.08999 * 109.47572 * 90.02808 * 1 2 3 31 31 H 1.08998 * 109.46853 * 210.01978 * 1 2 3 32 32 H 1.08998 * 109.47315 * 330.02062 * 1 2 3 33 33 H 1.07999 * 125.90009 * 0.02562 * 3 2 1 34 34 H 1.09001 * 110.71446 * 88.08648 * 8 6 5 35 35 H 1.08999 * 110.71105 * 324.82749 * 8 6 5 36 36 H 1.09000 * 109.88239 * 262.77528 * 9 8 6 37 37 H 1.09002 * 109.88404 * 141.60352 * 9 8 6 38 38 H 0.97001 * 120.00479 * 354.84996 * 13 11 10 39 39 H 1.08003 * 120.24839 * 359.97438 * 15 14 13 40 40 H 1.07997 * 120.66810 * 180.24276 * 16 15 14 41 41 H 1.07996 * 120.43451 * 179.71019 * 17 16 15 42 42 H 0.97003 * 120.00054 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.37026 * 94.71142 * 28 10 9 44 44 H 1.09003 * 110.36194 * 216.92396 * 28 10 9 45 45 H 1.08001 * 126.13338 * 179.73114 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1310 0.0000 4 7 3.5754 0.7304 -0.0006 5 7 3.5844 -0.6704 -0.0015 6 6 4.7746 -1.5247 -0.0018 7 1 5.6389 -0.9880 0.3894 8 6 5.0624 -2.0834 -1.4235 9 6 5.8198 -3.3963 -1.1329 10 7 5.4737 -3.8060 0.2360 11 6 5.9476 -4.8946 0.8736 12 8 5.5912 -5.1365 2.0105 13 7 6.8167 -5.7152 0.2509 14 6 7.3889 -6.7788 0.9441 15 6 8.3723 -7.5549 0.3264 16 6 8.9446 -8.6102 1.0199 17 6 8.5126 -8.8698 2.3084 18 6 7.5155 -8.0554 2.8730 19 6 7.0635 -8.3085 4.1879 20 1 7.4842 -9.1251 4.7558 21 6 6.0701 -7.5003 4.7545 22 7 5.5605 -6.5120 4.0668 23 14 5.4731 -7.8343 6.4927 24 1 6.6123 -7.7184 7.4382 25 1 4.4260 -6.8457 6.8550 26 1 4.9060 -9.2049 6.5665 27 7 6.9915 -7.0435 2.1736 28 6 4.5226 -2.8284 0.7958 29 6 2.3032 -1.0941 -0.0073 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8901 0.5135 33 1 1.9949 2.1578 0.0004 34 1 5.6890 -1.3938 -1.9892 35 1 4.1319 -2.2845 -1.9544 36 1 6.8942 -3.2292 -1.2094 37 1 5.5110 -4.1666 -1.8396 38 1 7.0437 -5.5650 -0.6801 39 1 8.6871 -7.3324 -0.6825 40 1 9.7093 -9.2202 0.5621 41 1 8.9355 -9.6876 2.8729 42 1 4.8726 -5.9519 4.4593 43 1 3.4978 -3.1700 0.6505 44 1 4.7221 -2.6692 1.8556 45 1 1.9724 -2.1222 -0.0136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881145048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:40 Heat of formation + Delta-G solvation = 125.376313 kcal Electronic energy + Delta-G solvation = -29107.600429 eV Core-core repulsion = 25128.417561 eV Total energy + Delta-G solvation = -3979.182868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50467 -39.88657 -38.32750 -36.93484 -34.14518 -33.48509 -32.98210 -31.83277 -30.49831 -30.24795 -29.18096 -28.35516 -26.58930 -25.51322 -23.77180 -22.39306 -21.77523 -21.18634 -20.71113 -20.11197 -19.21700 -18.22083 -17.30666 -17.01029 -16.21979 -15.54591 -15.13308 -14.84366 -14.68592 -14.47633 -14.27781 -14.09473 -13.92814 -13.61204 -13.40184 -13.32952 -13.02346 -12.85981 -12.81479 -12.61570 -12.13839 -12.02237 -11.91347 -11.87232 -11.65754 -11.21091 -11.13712 -10.96949 -10.73225 -10.66844 -10.46796 -9.95699 -9.73553 -9.56776 -9.24271 -9.04045 -8.51085 -8.32810 -7.97041 -7.25291 -6.97971 -6.12560 -4.40043 1.70964 2.11976 2.62877 2.82520 3.02752 3.11466 3.16989 3.18664 3.27431 3.97795 4.06782 4.08128 4.18502 4.48832 4.55767 4.59205 4.72693 4.87432 4.93958 4.96497 5.12204 5.30149 5.39251 5.44435 5.52630 5.58594 5.62280 5.69940 5.74397 5.84015 5.99936 6.02402 6.05895 6.23414 6.47809 6.50475 6.67348 6.77519 6.83914 6.86431 7.19282 7.32164 7.54676 7.59649 7.68925 7.80205 8.13698 8.24598 8.55708 8.76877 9.04667 9.45986 10.24443 10.48678 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.002943 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.377555 B = 9513.300949 C =11345.268013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.245 4.245 3 C 0.047 3.953 4 N -0.294 5.294 5 N -0.359 5.359 6 C 0.147 3.853 7 H 0.119 0.881 8 C -0.136 4.136 9 C 0.101 3.899 10 N -0.645 5.645 11 C 0.686 3.314 12 O -0.453 6.453 13 N -0.668 5.668 14 C 0.385 3.615 15 C -0.357 4.357 16 C -0.035 4.035 17 C -0.305 4.305 18 C 0.271 3.729 19 C -0.424 4.424 20 H 0.082 0.918 21 C 0.057 3.943 22 N -0.651 5.651 23 Si 0.896 3.104 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.267 1.267 27 N -0.473 5.473 28 C 0.128 3.872 29 C 0.058 3.942 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.181 0.819 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.272 0.728 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 12.572 -11.226 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.256 4.256 3 C -0.139 4.139 4 N -0.114 5.114 5 N -0.140 5.140 6 C 0.043 3.957 7 H 0.137 0.863 8 C -0.175 4.175 9 C -0.023 4.023 10 N -0.390 5.390 11 C 0.386 3.614 12 O -0.316 6.316 13 N -0.316 5.316 14 C 0.146 3.854 15 C -0.383 4.383 16 C -0.059 4.059 17 C -0.329 4.329 18 C 0.146 3.854 19 C -0.454 4.454 20 H 0.100 0.900 21 C -0.173 4.173 22 N -0.269 5.269 23 Si 0.720 3.280 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.192 1.192 27 N -0.191 5.191 28 C 0.003 3.997 29 C -0.088 4.088 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.198 0.802 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.229 0.771 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.858 13.285 -9.814 17.884 hybrid contribution -0.255 -0.778 -0.378 0.902 sum -7.113 12.507 -10.191 17.632 Atomic orbital electron populations 1.20042 0.89340 1.02200 1.01409 1.20135 0.97121 0.91818 1.16550 1.23795 0.89988 0.99773 1.00357 1.77364 1.21293 0.88591 1.24155 1.48379 1.04864 1.04394 1.56377 1.22450 0.86153 0.89833 0.97223 0.86262 1.23098 1.01895 0.96540 0.96009 1.21924 0.99664 0.95550 0.85208 1.47695 1.49896 1.26517 1.14885 1.15928 0.80972 0.79221 0.85293 1.91414 1.56808 1.69864 1.13466 1.42510 1.46080 1.29079 1.13958 1.18323 0.89708 0.86099 0.91291 1.20411 1.09903 1.06534 1.01470 1.20543 0.96382 0.94884 0.94126 1.21625 1.07554 1.06394 0.97297 1.18374 0.87807 0.86545 0.92664 1.19551 1.16689 1.12225 0.96982 0.89979 1.26189 0.96864 0.95227 0.98990 1.70323 1.14880 1.07973 1.33764 0.86589 0.79067 0.79042 0.83299 1.19180 1.20431 1.19177 1.68663 1.27767 1.19394 1.03283 1.22036 0.93532 0.85220 0.98946 1.22338 0.84267 1.00264 1.01919 0.92261 0.92090 0.91938 0.80184 0.89169 0.89917 0.91281 0.91307 0.77132 0.89157 0.88568 0.88536 0.91598 0.91368 0.89152 0.81016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.37 36.00 0.37 -0.15 16 2 C -0.24 -2.42 6.10 -105.05 -0.64 -3.06 16 3 C 0.05 0.49 11.96 -17.36 -0.21 0.28 16 4 N -0.29 -3.69 12.58 30.63 0.39 -3.31 16 5 N -0.36 -4.12 3.65 -52.64 -0.19 -4.31 16 6 C 0.15 1.57 4.17 -65.63 -0.27 1.30 16 7 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 8 C -0.14 -1.18 6.66 -24.74 -0.16 -1.34 16 9 C 0.10 1.02 6.16 -3.06 -0.02 1.00 16 10 N -0.64 -9.48 3.33 -176.24 -0.59 -10.07 16 11 C 0.69 13.98 8.45 -86.92 -0.73 13.24 16 12 O -0.45 -11.51 12.36 5.30 0.07 -11.45 16 13 N -0.67 -13.20 5.34 -15.79 -0.08 -13.28 16 14 C 0.39 9.39 7.43 -154.99 -1.15 8.24 16 15 C -0.36 -7.97 9.95 -38.89 -0.39 -8.35 16 16 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 17 C -0.31 -7.68 9.83 -38.66 -0.38 -8.06 16 18 C 0.27 7.63 6.55 -85.00 -0.56 7.07 16 19 C -0.42 -11.69 9.14 -37.73 -0.34 -12.03 16 20 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 21 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 22 N -0.65 -18.14 8.99 55.55 0.50 -17.64 16 23 Si 0.90 19.35 29.56 -169.99 -5.02 14.33 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 N -0.47 -13.30 5.74 -10.26 -0.06 -13.36 16 28 C 0.13 1.67 6.33 -2.53 -0.02 1.66 16 29 C 0.06 0.60 10.48 -17.22 -0.18 0.42 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.40 6.07 7.70 -40.82 -0.31 5.76 16 39 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 43 H 0.07 0.84 6.38 -51.93 -0.33 0.51 16 44 H 0.09 1.37 8.03 -51.93 -0.42 0.96 16 45 H 0.17 1.47 6.99 -52.49 -0.37 1.10 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -34.51 374.68 -10.58 -45.09 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.05 Total: 7.92 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -5.18 Total: 0.43 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.04 Total: -61.96 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.51 -10.58 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.467 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds