Wall clock time and date at job start Sat Apr 11 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39869 * 126.03632 * 2 1 4 4 N 1.30842 * 108.20351 * 180.02562 * 3 2 1 5 5 N 1.40081 * 108.20257 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.03781 * 180.02562 * 5 4 3 7 7 H 1.09004 * 110.91662 * 22.56580 * 6 5 4 8 8 C 1.55442 * 111.11322 * 258.58155 * 6 5 4 9 9 C 1.54331 * 102.96882 * 206.46059 * 8 6 5 10 10 N 1.47020 * 107.26993 * 22.18955 * 9 8 6 11 11 C 1.34771 * 125.65246 * 181.08138 * 10 9 8 12 12 O 1.21575 * 120.00629 * 179.97438 * 11 10 9 13 13 N 1.34775 * 119.99710 * 359.97438 * 11 10 9 14 14 C 1.39252 * 120.00219 * 174.85020 * 13 11 10 15 15 C 1.39681 * 119.57789 * 185.39619 * 14 13 11 16 16 C 1.38641 * 119.49690 * 179.75145 * 15 14 13 17 17 C 1.38357 * 118.66963 * 0.50651 * 16 15 14 18 18 C 1.40574 * 119.13023 * 359.73367 * 17 16 15 19 19 C 1.41332 * 119.78591 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00423 * 0.02562 * 19 18 17 21 21 C 1.40032 * 119.99839 * 180.02562 * 19 18 17 22 22 N 1.30743 * 119.99820 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47333 * 60.00062 * 23 21 19 25 25 H 1.48498 * 109.47204 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46770 * 299.99983 * 23 21 19 27 27 N 1.31902 * 119.57070 * 5.65891 * 14 13 11 28 28 C 1.47434 * 108.70196 * 1.06258 * 10 9 8 29 29 C 1.34944 * 107.92812 * 0.25945 * 5 4 3 30 30 H 1.08999 * 109.47572 * 90.02808 * 1 2 3 31 31 H 1.08998 * 109.46853 * 210.01978 * 1 2 3 32 32 H 1.08998 * 109.47315 * 330.02062 * 1 2 3 33 33 H 1.07999 * 125.90009 * 0.02562 * 3 2 1 34 34 H 1.09001 * 110.71446 * 88.08648 * 8 6 5 35 35 H 1.08999 * 110.71105 * 324.82749 * 8 6 5 36 36 H 1.09000 * 109.88239 * 262.77528 * 9 8 6 37 37 H 1.09002 * 109.88404 * 141.60352 * 9 8 6 38 38 H 0.97001 * 120.00479 * 354.84996 * 13 11 10 39 39 H 1.08003 * 120.24839 * 359.97438 * 15 14 13 40 40 H 1.07997 * 120.66810 * 180.24276 * 16 15 14 41 41 H 1.07996 * 120.43451 * 179.71019 * 17 16 15 42 42 H 0.97003 * 120.00054 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.37026 * 94.71142 * 28 10 9 44 44 H 1.09003 * 110.36194 * 216.92396 * 28 10 9 45 45 H 1.08001 * 126.13338 * 179.73114 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1310 0.0000 4 7 3.5754 0.7304 -0.0006 5 7 3.5844 -0.6704 -0.0015 6 6 4.7746 -1.5247 -0.0018 7 1 5.6389 -0.9880 0.3894 8 6 5.0624 -2.0834 -1.4235 9 6 5.8198 -3.3963 -1.1329 10 7 5.4737 -3.8060 0.2360 11 6 5.9476 -4.8946 0.8736 12 8 5.5912 -5.1365 2.0105 13 7 6.8167 -5.7152 0.2509 14 6 7.3889 -6.7788 0.9441 15 6 8.3723 -7.5549 0.3264 16 6 8.9446 -8.6102 1.0199 17 6 8.5126 -8.8698 2.3084 18 6 7.5155 -8.0554 2.8730 19 6 7.0635 -8.3085 4.1879 20 1 7.4842 -9.1251 4.7558 21 6 6.0701 -7.5003 4.7545 22 7 5.5605 -6.5120 4.0668 23 14 5.4731 -7.8343 6.4927 24 1 6.6123 -7.7184 7.4382 25 1 4.4260 -6.8457 6.8550 26 1 4.9060 -9.2049 6.5665 27 7 6.9915 -7.0435 2.1736 28 6 4.5226 -2.8284 0.7958 29 6 2.3032 -1.0941 -0.0073 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8901 0.5135 33 1 1.9949 2.1578 0.0004 34 1 5.6890 -1.3938 -1.9892 35 1 4.1319 -2.2845 -1.9544 36 1 6.8942 -3.2292 -1.2094 37 1 5.5110 -4.1666 -1.8396 38 1 7.0437 -5.5650 -0.6801 39 1 8.6871 -7.3324 -0.6825 40 1 9.7093 -9.2202 0.5621 41 1 8.9355 -9.6876 2.8729 42 1 4.8726 -5.9519 4.4593 43 1 3.4978 -3.1700 0.6505 44 1 4.7221 -2.6692 1.8556 45 1 1.9724 -2.1222 -0.0136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:39 Heat of formation + Delta-G solvation = 104.523862 kcal Electronic energy + Delta-G solvation = -29108.504659 eV Core-core repulsion = 25128.417561 eV Total energy + Delta-G solvation = -3980.087099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.33644 -41.30919 -39.89601 -38.37428 -35.94111 -34.92085 -34.34502 -32.64970 -32.21100 -31.48488 -30.74584 -29.43986 -27.61788 -27.18523 -24.97756 -23.49078 -23.21847 -22.94008 -21.51820 -21.05355 -20.62638 -19.82137 -18.78261 -18.03412 -17.94815 -16.69477 -16.45175 -16.26090 -16.04119 -15.95012 -15.71611 -15.48701 -14.98948 -14.79838 -14.62284 -14.47584 -14.06900 -14.02653 -13.87401 -13.68087 -13.64778 -13.40875 -12.88931 -12.86108 -12.73453 -12.68224 -12.56804 -12.54403 -12.31195 -11.99921 -11.79476 -11.53359 -11.52740 -10.94136 -10.87962 -10.41061 -9.90000 -9.61922 -9.25084 -9.13542 -8.80156 -8.03152 -6.41207 0.89451 0.96057 1.16536 1.28221 1.38777 1.50282 1.53359 1.80613 1.87046 2.26160 2.46568 2.99529 3.01928 3.17117 3.40336 3.71549 3.81959 3.96598 4.07086 4.10463 4.13100 4.33952 4.45094 4.50050 4.58079 4.62466 4.66534 4.69794 4.80218 4.85918 4.87979 4.97249 4.98773 5.01913 5.05488 5.25643 5.26964 5.29445 5.31984 5.66768 5.77245 5.83298 5.92449 5.99805 6.07043 6.24867 6.39384 6.73671 6.81598 7.03112 7.10447 7.89782 8.36503 8.57375 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.002943 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.377555 B = 9513.300949 C =11345.268013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.249 4.249 3 C 0.045 3.955 4 N -0.328 5.328 5 N -0.367 5.367 6 C 0.156 3.844 7 H 0.114 0.886 8 C -0.119 4.119 9 C 0.097 3.903 10 N -0.639 5.639 11 C 0.679 3.321 12 O -0.511 6.511 13 N -0.655 5.655 14 C 0.363 3.637 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.329 4.329 18 C 0.237 3.763 19 C -0.466 4.466 20 H 0.086 0.914 21 C 0.011 3.989 22 N -0.687 5.687 23 Si 0.973 3.027 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.259 1.259 27 N -0.508 5.508 28 C 0.130 3.870 29 C 0.046 3.954 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.207 0.793 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.417 0.583 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.105 0.895 42 H 0.268 0.732 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 13.239 -13.477 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.261 4.261 3 C -0.141 4.141 4 N -0.148 5.148 5 N -0.149 5.149 6 C 0.052 3.948 7 H 0.132 0.868 8 C -0.158 4.158 9 C -0.026 4.026 10 N -0.382 5.382 11 C 0.380 3.620 12 O -0.378 6.378 13 N -0.306 5.306 14 C 0.124 3.876 15 C -0.369 4.369 16 C -0.057 4.057 17 C -0.352 4.352 18 C 0.111 3.889 19 C -0.497 4.497 20 H 0.104 0.896 21 C -0.215 4.215 22 N -0.306 5.306 23 Si 0.794 3.206 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.183 1.183 27 N -0.227 5.227 28 C 0.004 3.996 29 C -0.100 4.100 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.224 0.776 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.254 0.746 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.967 13.994 -12.162 19.806 hybrid contribution -0.177 -0.918 0.121 0.943 sum -7.143 13.076 -12.041 19.157 Atomic orbital electron populations 1.20094 0.87523 1.02872 1.02278 1.20516 0.98429 0.91434 1.15674 1.24325 0.89463 1.01206 0.99102 1.77320 1.22668 0.89122 1.25731 1.48399 1.05185 1.04247 1.57074 1.22266 0.85954 0.88431 0.98159 0.86840 1.23047 1.02472 0.95678 0.94596 1.22240 1.00936 0.96822 0.82567 1.47464 1.49173 1.24942 1.16644 1.16136 0.80796 0.80150 0.84965 1.91397 1.58687 1.71615 1.16103 1.42314 1.45615 1.27962 1.14696 1.18829 0.90452 0.87388 0.90962 1.20901 1.07941 1.05057 1.02962 1.21031 0.96571 0.95013 0.93076 1.21811 1.07742 1.06783 0.98908 1.18871 0.89000 0.87490 0.93516 1.19874 1.18445 1.13517 0.97862 0.89586 1.27038 0.96568 0.94661 1.03240 1.70545 1.15470 1.09015 1.35526 0.85415 0.78478 0.79009 0.77699 1.18518 1.20076 1.18327 1.68629 1.29006 1.19965 1.05121 1.22029 0.93475 0.86350 0.97709 1.22702 0.84084 1.01224 1.01940 0.91214 0.91883 0.90843 0.77616 0.87100 0.88995 0.89803 0.89403 0.74581 0.84907 0.84348 0.87718 0.92141 0.90667 0.92293 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.37 71.24 0.74 -0.14 16 2 C -0.25 -4.56 6.10 -20.14 -0.12 -4.68 16 3 C 0.04 0.87 11.96 85.24 1.02 1.89 16 4 N -0.33 -7.96 12.58 -57.02 -0.72 -8.68 16 5 N -0.37 -8.14 3.65 -320.44 -1.17 -9.31 16 6 C 0.16 3.21 4.17 46.48 0.19 3.41 16 7 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 8 C -0.12 -1.74 6.66 31.89 0.21 -1.53 16 9 C 0.10 1.71 6.16 86.73 0.53 2.25 16 10 N -0.64 -18.59 3.33 -829.76 -2.76 -21.35 16 11 C 0.68 28.20 8.45 179.06 1.51 29.72 16 12 O -0.51 -27.35 12.36 -3.95 -0.05 -27.39 16 13 N -0.66 -25.46 5.34 -322.13 -1.72 -27.18 16 14 C 0.36 17.66 7.43 133.26 0.99 18.65 16 15 C -0.34 -14.48 9.95 22.72 0.23 -14.25 16 16 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 17 C -0.33 -16.68 9.83 22.87 0.22 -16.46 16 18 C 0.24 13.82 6.55 40.19 0.26 14.08 16 19 C -0.47 -26.88 9.14 23.47 0.21 -26.67 16 20 H 0.09 4.63 7.85 -2.91 -0.02 4.60 16 21 C 0.01 0.58 5.50 85.29 0.47 1.05 16 22 N -0.69 -40.40 8.99 21.84 0.20 -40.21 16 23 Si 0.97 41.43 29.56 68.60 2.03 43.45 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 27 N -0.51 -29.55 5.74 -186.36 -1.07 -30.62 16 28 C 0.13 3.46 6.33 86.85 0.55 4.01 16 29 C 0.05 0.90 10.48 83.54 0.88 1.78 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.42 11.83 7.70 -92.71 -0.71 11.11 16 39 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 42 H 0.27 14.99 8.29 -92.71 -0.77 14.23 16 43 H 0.08 1.89 6.38 -2.39 -0.02 1.87 16 44 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16 45 H 0.19 2.98 6.99 -2.91 -0.02 2.96 16 Total: -1.00 -80.17 374.68 3.18 -76.99 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.31 Total: 32.39 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 8.13 Total: 11.91 kcal Atomic # 7 Polarization: -130.11 SS G_CDS: -7.24 Total: -137.35 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -80.17 3.18 -76.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.517 kcal (2) G-P(sol) polarization free energy of solvation -80.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds