Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38045 * 126.29272 * 2 1 4 4 C 1.47418 * 126.41430 * 0.02562 * 3 2 1 5 5 O 1.21615 * 120.00165 * 326.18170 * 4 3 2 6 6 N 1.34776 * 120.00081 * 146.18456 * 4 3 2 7 7 C 1.47342 * 121.24738 * 353.88049 * 6 4 3 8 8 C 1.53514 * 107.12197 * 220.69191 * 7 6 4 9 9 N 1.46522 * 109.16696 * 298.28046 * 8 7 6 10 10 C 1.46905 * 110.99910 * 179.37309 * 9 8 7 11 11 C 1.38994 * 113.10973 * 53.84784 * 9 8 7 12 12 N 1.32865 * 118.68656 * 156.90758 * 11 9 8 13 13 C 1.32122 * 121.91818 * 178.80459 * 12 11 9 14 14 C 1.38043 * 121.22857 * 0.87744 * 13 12 11 15 15 C 1.38864 * 119.07296 * 359.56522 * 14 13 12 16 16 C 1.38713 * 118.36714 * 359.97438 * 15 14 13 17 17 C 1.41293 * 107.17268 * 180.27735 * 3 2 1 18 18 N 1.30451 * 108.01974 * 359.59219 * 17 3 2 19 19 N 1.34273 * 126.29213 * 180.02562 * 2 1 3 20 20 C 1.46500 * 125.75448 * 359.94365 * 19 2 1 21 21 C 1.50702 * 109.47051 * 90.00138 * 20 19 2 22 22 H 1.07994 * 120.00018 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99783 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99835 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99999 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46705 * 60.00016 * 25 23 21 27 27 H 1.48494 * 109.46863 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47056 * 300.00141 * 25 23 21 29 29 H 1.09005 * 109.47290 * 89.97601 * 1 2 3 30 30 H 1.09000 * 109.47538 * 209.96903 * 1 2 3 31 31 H 1.09000 * 109.47352 * 329.97410 * 1 2 3 32 32 H 1.09003 * 109.92309 * 340.08754 * 7 6 4 33 33 H 1.08999 * 109.92621 * 101.20620 * 7 6 4 34 34 H 1.08996 * 109.52552 * 58.18843 * 8 7 6 35 35 H 1.08997 * 109.52487 * 178.37799 * 8 7 6 36 36 H 1.09000 * 109.46925 * 60.00152 * 10 9 8 37 37 H 1.08997 * 109.46847 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47224 * 300.00185 * 10 9 8 39 39 H 1.07999 * 119.36807 * 180.30875 * 13 12 11 40 40 H 1.07994 * 120.46694 * 179.54732 * 14 13 12 41 41 H 1.07998 * 120.82072 * 179.97438 * 15 14 13 42 42 H 1.08001 * 125.99321 * 179.76468 * 17 3 2 43 43 H 1.09004 * 109.47277 * 210.00164 * 20 19 2 44 44 H 1.09000 * 109.47206 * 330.00214 * 20 19 2 45 45 H 0.97004 * 119.99553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.8695 2.8409 -0.5852 6 7 2.6117 3.4517 0.6501 7 6 3.7714 3.0767 1.4780 8 6 3.7248 3.9469 2.7418 9 7 3.8375 5.3569 2.3594 10 6 3.7824 6.2287 3.5405 11 6 2.8965 5.7420 1.4117 12 7 2.5740 7.0276 1.3190 13 6 1.7052 7.4672 0.4260 14 6 1.0752 6.6020 -0.4458 15 6 1.3715 5.2468 -0.3834 16 6 2.2948 4.8167 0.5583 17 6 3.6591 0.6499 -0.0065 18 7 3.6341 -0.6544 -0.0013 19 7 2.3018 -1.0823 -0.0005 20 6 1.8502 -2.4759 0.0001 21 6 1.6943 -2.9540 -1.4206 22 1 1.9096 -2.2864 -2.2417 23 6 1.2767 -4.2438 -1.6720 24 7 1.0141 -5.0566 -0.6720 25 14 1.0827 -4.8362 -3.4329 26 1 2.3878 -4.7384 -4.1346 27 1 0.6251 -6.2489 -3.4323 28 1 0.0805 -3.9920 -4.1316 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5133 31 1 -0.3634 0.8897 0.5142 32 1 3.7083 2.0230 1.7501 33 1 4.6950 3.2640 0.9304 34 1 2.7803 3.7848 3.2611 35 1 4.5530 3.6803 3.3984 36 1 4.6042 5.9821 4.2128 37 1 3.8687 7.2694 3.2282 38 1 2.8338 6.0813 4.0569 39 1 1.4771 8.5220 0.3836 40 1 0.3615 6.9738 -1.1661 41 1 0.8949 4.5448 -1.0516 42 1 4.5450 1.2676 -0.0118 43 1 2.5853 -3.0959 0.5134 44 1 0.8919 -2.5472 0.5146 45 1 0.7207 -5.9641 -0.8489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889369751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = 107.906749 kcal Electronic energy + Delta-G solvation = -29621.708315 eV Core-core repulsion = 25641.767910 eV Total energy + Delta-G solvation = -3979.940406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63069 -40.74349 -38.88763 -37.70939 -35.45851 -33.99264 -32.28387 -32.00294 -31.25936 -30.82603 -29.23701 -27.44553 -26.77421 -25.56231 -24.49784 -23.91740 -23.24243 -22.05536 -20.65052 -19.99474 -18.69404 -17.77896 -17.25716 -17.17743 -16.86336 -16.16043 -15.77194 -15.33854 -15.03688 -14.88000 -14.64163 -14.44218 -14.37874 -14.07326 -13.52738 -13.43407 -13.36393 -13.07707 -12.61474 -12.57778 -12.45219 -12.28068 -12.21637 -12.01780 -11.89065 -11.65987 -11.60094 -11.17416 -10.92748 -10.71085 -10.47117 -10.38618 -10.31627 -10.02854 -9.96111 -9.16744 -8.93682 -8.75838 -8.71343 -8.11915 -7.63904 -6.39150 -4.47357 1.00983 1.26479 2.07181 2.60819 2.65035 3.14197 3.17071 3.19901 3.21230 3.29084 3.43766 3.81266 4.20015 4.27711 4.43411 4.54095 4.76236 4.85161 4.91981 4.97594 5.04450 5.09244 5.10865 5.20557 5.25793 5.30226 5.32768 5.45420 5.52799 5.55868 5.70952 5.74204 5.85935 5.94824 6.11942 6.23828 6.28600 6.33575 6.44700 6.57796 6.66665 6.80988 6.96882 7.03365 7.23726 7.48021 7.67079 7.70613 7.90403 8.16978 8.26603 8.57802 9.20074 10.68986 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002667 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.136947 B =10495.909816 C =11257.801806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.611 3.389 5 O -0.527 6.527 6 N -0.553 5.553 7 C 0.099 3.901 8 C 0.043 3.957 9 N -0.483 5.483 10 C 0.038 3.962 11 C 0.289 3.711 12 N -0.499 5.499 13 C 0.094 3.906 14 C -0.181 4.181 15 C -0.088 4.088 16 C 0.083 3.917 17 C 0.057 3.943 18 N -0.290 5.290 19 N -0.310 5.310 20 C 0.251 3.749 21 C -0.543 4.543 22 H 0.065 0.935 23 C 0.069 3.931 24 N -0.890 5.890 25 Si 0.908 3.092 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.034 0.966 39 H 0.154 0.846 40 H 0.135 0.865 41 H 0.178 0.822 42 H 0.179 0.821 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 19.948 7.472 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.027 3.973 3 C -0.349 4.349 4 C 0.404 3.596 5 O -0.404 6.404 6 N -0.277 5.277 7 C -0.024 4.024 8 C -0.084 4.084 9 N -0.199 5.199 10 C -0.108 4.108 11 C 0.054 3.946 12 N -0.213 5.213 13 C -0.064 4.064 14 C -0.203 4.203 15 C -0.116 4.116 16 C -0.016 4.016 17 C -0.130 4.130 18 N -0.110 5.110 19 N -0.087 5.087 20 C 0.134 3.866 21 C -0.581 4.581 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.172 0.828 40 H 0.153 0.847 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.516 19.141 7.655 20.913 hybrid contribution -1.345 -0.334 -1.243 1.862 sum 2.172 18.807 6.412 19.988 Atomic orbital electron populations 1.20474 0.86815 1.03136 1.04272 1.21381 0.94830 0.86446 0.94614 1.19436 0.93609 0.91516 1.30338 1.17488 0.81482 0.83940 0.76685 1.90537 1.25021 1.80740 1.44147 1.45660 1.30511 1.03661 1.47877 1.22447 0.88406 1.00934 0.90578 1.22542 1.03047 0.85400 0.97443 1.57925 1.44298 1.04830 1.12893 1.22316 1.00617 0.98459 0.89451 1.19305 0.91922 0.89053 0.94343 1.67546 1.16495 1.13489 1.23731 1.22422 0.92472 1.00010 0.91468 1.22001 1.02868 0.93550 1.01836 1.22455 0.95724 0.96979 0.96436 1.18454 1.00255 0.83456 0.99475 1.23854 0.96142 0.92523 1.00469 1.77189 0.98536 1.12020 1.23210 1.49403 1.02413 1.08320 1.48535 1.19886 0.96437 0.70693 0.99544 1.21205 1.47751 0.98194 0.90935 0.91646 1.24917 0.94333 0.95949 0.98353 1.69900 1.44324 1.07243 1.31213 0.86373 0.78955 0.77775 0.83413 1.19851 1.20836 1.19798 0.89224 0.90467 0.90273 0.86738 0.89420 0.92582 0.87392 0.90805 0.88962 0.94695 0.82834 0.84674 0.80509 0.80433 0.92385 0.92521 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.50 36.01 0.34 -1.14 16 2 C 0.16 3.13 7.00 -81.59 -0.57 2.56 16 3 C -0.33 -5.73 5.33 -105.07 -0.56 -6.29 16 4 C 0.61 9.92 7.32 -12.52 -0.09 9.83 16 5 O -0.53 -9.47 12.83 5.26 0.07 -9.41 16 6 N -0.55 -7.62 3.01 -113.41 -0.34 -7.96 16 7 C 0.10 1.03 5.13 -3.32 -0.02 1.02 16 8 C 0.04 0.39 5.62 -3.76 -0.02 0.37 16 9 N -0.48 -5.27 4.79 -180.78 -0.87 -6.13 16 10 C 0.04 0.33 9.24 60.07 0.56 0.89 16 11 C 0.29 3.78 6.69 -154.48 -1.03 2.75 16 12 N -0.50 -6.31 8.76 -12.21 -0.11 -6.42 16 13 C 0.09 1.02 11.16 -17.50 -0.20 0.83 16 14 C -0.18 -2.02 10.12 -39.42 -0.40 -2.42 16 15 C -0.09 -1.22 9.04 -39.17 -0.35 -1.58 16 16 C 0.08 1.17 6.34 -83.26 -0.53 0.64 16 17 C 0.06 0.93 9.73 -16.98 -0.17 0.77 16 18 N -0.29 -5.87 12.50 30.86 0.39 -5.48 16 19 N -0.31 -6.61 3.56 -57.77 -0.21 -6.82 16 20 C 0.25 5.98 5.97 -5.19 -0.03 5.95 16 21 C -0.54 -14.24 9.39 -34.44 -0.32 -14.56 16 22 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.04 13.29 55.43 0.74 -23.30 16 25 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.25 7.05 -51.93 -0.37 0.88 16 31 H 0.08 1.20 7.52 -51.93 -0.39 0.81 16 32 H 0.11 1.18 5.59 -51.93 -0.29 0.89 16 33 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.88 7.23 -51.93 -0.38 0.50 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.18 2.71 5.07 -52.91 -0.27 2.44 16 42 H 0.18 2.21 6.83 -52.49 -0.36 1.85 16 43 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.06 1.33 7.02 -51.93 -0.36 0.97 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -30.82 367.94 -9.05 -39.87 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.75 Total: 3.32 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.49 Total: 1.31 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.40 Total: -56.11 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.82 -9.05 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889369751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.778 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds