Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38076 * 126.29038 * 2 1 4 4 C 1.47382 * 126.41871 * 359.97438 * 3 2 1 5 5 O 1.21592 * 120.00112 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99535 * 180.02562 * 4 3 2 7 7 C 1.38962 * 119.99769 * 185.07776 * 6 4 3 8 8 C 1.39557 * 120.52233 * 174.94262 * 7 6 4 9 9 C 1.38169 * 118.33167 * 179.97438 * 8 7 6 10 10 N 1.32533 * 119.18843 * 359.74862 * 9 8 7 11 11 C 1.31767 * 120.99589 * 0.50953 * 10 9 8 12 12 C 1.50701 * 119.08442 * 179.75988 * 11 10 9 13 13 C 1.53005 * 115.54601 * 214.14353 * 12 11 10 14 14 C 1.52995 * 117.50185 * 68.47650 * 12 11 10 15 15 C 1.52992 * 117.50029 * 359.81545 * 12 11 10 16 16 N 1.31770 * 121.83058 * 359.47653 * 11 10 9 17 17 C 1.41305 * 107.15895 * 180.24897 * 3 2 1 18 18 N 1.30443 * 108.02471 * 359.61134 * 17 3 2 19 19 N 1.34251 * 126.29490 * 180.02562 * 2 1 3 20 20 C 1.46502 * 125.75299 * 359.96559 * 19 2 1 21 21 C 1.50694 * 109.47579 * 89.99122 * 20 19 2 22 22 H 1.07999 * 119.99723 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00015 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00458 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99963 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46991 * 90.00438 * 25 23 21 27 27 H 1.48499 * 109.47515 * 210.00819 * 25 23 21 28 28 H 1.48503 * 109.47352 * 330.00473 * 25 23 21 29 29 H 1.08999 * 109.47614 * 89.97833 * 1 2 3 30 30 H 1.09000 * 109.47181 * 209.97863 * 1 2 3 31 31 H 1.09003 * 109.47586 * 329.97876 * 1 2 3 32 32 H 0.97000 * 120.00685 * 5.08481 * 6 4 3 33 33 H 1.08002 * 120.83571 * 0.02562 * 8 7 6 34 34 H 1.08000 * 120.40028 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.46720 * 85.58565 * 13 12 11 36 36 H 1.09003 * 109.46713 * 205.58183 * 13 12 11 37 37 H 1.08996 * 109.47603 * 325.58303 * 13 12 11 38 38 H 1.09005 * 117.49883 * 359.97438 * 14 12 11 39 39 H 1.08995 * 117.50327 * 145.01791 * 14 12 11 40 40 H 1.09001 * 117.49867 * 214.98302 * 15 12 11 41 41 H 1.08997 * 117.50026 * 359.97438 * 15 12 11 42 42 H 1.08009 * 125.98782 * 179.76980 * 17 3 2 43 43 H 1.08998 * 109.46845 * 209.99593 * 20 19 2 44 44 H 1.09000 * 109.46703 * 329.98985 * 20 19 2 45 45 H 0.96991 * 120.00620 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1129 0.0000 4 6 1.8862 2.5202 -0.0005 5 8 0.7000 2.7877 -0.0006 6 7 2.8004 3.5104 -0.0010 7 6 2.3909 4.8341 0.1050 8 6 3.3306 5.8604 0.2115 9 6 2.8733 7.1602 0.3140 10 7 1.5679 7.3888 0.3029 11 6 0.7060 6.3968 0.2060 12 6 -0.7690 6.7056 0.2029 13 6 -1.6626 5.6637 0.8789 14 6 -1.3350 7.4381 -1.0152 15 6 -1.1837 8.1737 0.3186 16 7 1.0982 5.1428 0.1061 17 6 3.6592 0.6498 -0.0059 18 7 3.6341 -0.6543 -0.0007 19 7 2.3017 -1.0820 -0.0005 20 6 1.8501 -2.4757 -0.0004 21 6 1.6944 -2.9535 -1.4211 22 1 1.9105 -2.2859 -2.2420 23 6 1.2769 -4.2432 -1.6728 24 7 1.0141 -5.0563 -0.6732 25 14 1.0845 -4.8356 -3.4339 26 1 2.3656 -5.4238 -3.9010 27 1 0.0156 -5.8645 -3.4962 28 1 0.7194 -3.6894 -4.3047 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 3.7442 3.2993 -0.0754 33 1 4.3888 5.6441 0.2128 34 1 3.5713 7.9801 0.3975 35 1 -1.7098 5.8650 1.9491 36 1 -2.6655 5.7152 0.4549 37 1 -1.2492 4.6687 0.7142 38 1 -0.6403 7.6971 -1.8143 39 1 -2.3440 7.1781 -1.3349 40 1 -2.0933 8.3973 0.8759 41 1 -0.3897 8.9163 0.3973 42 1 4.5452 1.2675 -0.0109 43 1 2.5851 -3.0957 0.5130 44 1 0.8918 -2.5471 0.5141 45 1 0.7201 -5.9635 -0.8502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890244318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 118.484883 kcal Electronic energy + Delta-G solvation = -28662.399103 eV Core-core repulsion = 24682.917400 eV Total energy + Delta-G solvation = -3979.481703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.47123 -40.83572 -39.07880 -37.68553 -35.22563 -33.97885 -33.13203 -32.19380 -31.41375 -30.85138 -28.59631 -27.59851 -26.77081 -25.01503 -24.48015 -23.36820 -22.56202 -22.06594 -20.45198 -20.21079 -19.11918 -17.78705 -17.40015 -16.86229 -16.62337 -15.75106 -15.62482 -15.57784 -15.17034 -14.78212 -14.56301 -14.37662 -14.22080 -13.92416 -13.78877 -13.30416 -13.08325 -12.69696 -12.51033 -12.34494 -12.18163 -11.98308 -11.86334 -11.70044 -11.54843 -11.50363 -11.16629 -10.92977 -10.90509 -10.63849 -10.44523 -10.38572 -10.31952 -9.99722 -9.84050 -9.67587 -8.91083 -8.82059 -8.75440 -8.69243 -8.05339 -6.38084 -4.46299 0.76586 1.05091 2.09891 2.65058 2.68384 3.15480 3.21918 3.23286 3.32458 3.39334 3.68406 3.74543 3.93446 4.16840 4.20541 4.53536 4.61882 4.82571 4.83775 4.90408 4.94128 4.99508 5.10988 5.20669 5.29428 5.41703 5.50213 5.64345 5.66292 5.75599 5.78054 5.81780 5.88088 6.01915 6.05026 6.07386 6.34335 6.39835 6.44761 6.54902 6.68396 6.79554 6.84626 7.04966 7.38730 7.49670 7.69038 7.71895 8.12000 8.26103 8.39858 8.58814 9.20986 10.70186 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.002407 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.774810 B =11631.441504 C =12493.216646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.173 3.827 3 C -0.336 4.336 4 C 0.593 3.407 5 O -0.480 6.480 6 N -0.654 5.654 7 C 0.419 3.581 8 C -0.279 4.279 9 C 0.170 3.830 10 N -0.548 5.548 11 C 0.384 3.616 12 C -0.069 4.069 13 C -0.112 4.112 14 C -0.153 4.153 15 C -0.152 4.152 16 N -0.502 5.502 17 C 0.057 3.943 18 N -0.292 5.292 19 N -0.312 5.312 20 C 0.251 3.749 21 C -0.541 4.541 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.418 0.582 33 H 0.147 0.853 34 H 0.169 0.831 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.176 0.824 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 23.308 3.050 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.035 3.965 3 C -0.352 4.352 4 C 0.384 3.616 5 O -0.350 6.350 6 N -0.300 5.300 7 C 0.178 3.822 8 C -0.305 4.305 9 C 0.006 3.994 10 N -0.265 5.265 11 C 0.116 3.884 12 C -0.071 4.071 13 C -0.170 4.170 14 C -0.191 4.191 15 C -0.190 4.190 16 N -0.222 5.222 17 C -0.130 4.130 18 N -0.111 5.111 19 N -0.088 5.088 20 C 0.134 3.866 21 C -0.580 4.580 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.196 1.196 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.256 0.744 33 H 0.164 0.836 34 H 0.186 0.814 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.193 0.807 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.095 22.042 3.115 22.261 hybrid contribution 1.313 -0.165 -1.022 1.672 sum 1.218 21.877 2.092 22.011 Atomic orbital electron populations 1.20605 0.86590 1.03972 1.04122 1.21479 0.95034 0.86390 0.93595 1.19524 0.93367 0.91764 1.30517 1.17552 0.85204 0.83637 0.75256 1.90810 1.15615 1.83292 1.45300 1.43555 1.11808 1.02717 1.71960 1.18685 0.89467 0.85445 0.88636 1.22250 1.01320 0.94256 1.12671 1.22895 0.91879 0.95244 0.89333 1.68089 1.03116 1.36930 1.18379 1.21901 0.94967 0.83087 0.88435 1.19728 0.87492 0.95294 1.04596 1.21323 0.97392 0.99262 0.98991 1.23112 1.02018 1.02554 0.91437 1.23107 1.03074 0.93305 0.99495 1.68156 1.15165 1.21366 1.17503 1.23736 0.96162 0.92775 1.00333 1.77157 0.98661 1.12143 1.23164 1.49413 1.02432 1.08401 1.48570 1.19894 0.96495 0.70702 0.99557 1.21226 1.47647 0.98183 0.90907 0.91647 1.24919 0.94371 0.95972 0.98344 1.69904 1.44370 1.07191 1.31157 0.86318 0.78126 0.78674 0.83393 1.20227 1.20737 1.19573 0.89608 0.90675 0.88729 0.74436 0.83569 0.81435 0.92644 0.92087 0.89225 0.88942 0.87936 0.88342 0.87293 0.80672 0.92417 0.92443 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.57 36.00 0.34 -1.31 16 2 C 0.17 3.38 7.01 -81.60 -0.57 2.81 16 3 C -0.34 -5.83 6.13 -105.07 -0.64 -6.47 16 4 C 0.59 9.60 7.77 -12.54 -0.10 9.50 16 5 O -0.48 -8.94 13.15 5.29 0.07 -8.87 16 6 N -0.65 -8.09 5.37 -12.27 -0.07 -8.16 16 7 C 0.42 5.42 7.45 -154.46 -1.15 4.27 16 8 C -0.28 -2.59 10.04 -39.11 -0.39 -2.99 16 9 C 0.17 1.58 11.29 -17.27 -0.20 1.38 16 10 N -0.55 -6.55 9.30 -10.80 -0.10 -6.65 16 11 C 0.38 5.23 7.12 -157.24 -1.12 4.11 16 12 C -0.07 -0.81 2.61 -155.66 -0.41 -1.22 16 13 C -0.11 -1.31 9.79 37.16 0.36 -0.94 16 14 C -0.15 -1.50 9.88 -26.70 -0.26 -1.77 16 15 C -0.15 -1.41 9.73 -26.70 -0.26 -1.67 16 16 N -0.50 -7.63 7.04 -9.90 -0.07 -7.69 16 17 C 0.06 0.93 11.51 -16.98 -0.20 0.73 16 18 N -0.29 -6.00 12.50 30.87 0.39 -5.62 16 19 N -0.31 -6.81 3.56 -57.77 -0.21 -7.02 16 20 C 0.25 6.08 5.97 -5.20 -0.03 6.05 16 21 C -0.54 -14.31 9.39 -34.44 -0.32 -14.64 16 22 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 25 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.07 1.28 7.05 -51.93 -0.37 0.91 16 31 H 0.09 1.57 6.50 -51.93 -0.34 1.24 16 32 H 0.42 3.60 7.69 -40.82 -0.31 3.28 16 33 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 37 H 0.09 1.31 7.37 -51.93 -0.38 0.93 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.11 1.04 7.50 -51.93 -0.39 0.65 16 42 H 0.18 1.90 7.51 -52.48 -0.39 1.51 16 43 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.06 1.39 7.02 -51.93 -0.36 1.02 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -32.45 385.32 -9.39 -41.84 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.88 Total: 4.79 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -5.04 Total: -0.45 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.68 Total: -58.64 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.87 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.45 -9.39 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890244318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.320 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds