Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38076 * 126.29038 * 2 1 4 4 C 1.47382 * 126.41871 * 359.97438 * 3 2 1 5 5 O 1.21592 * 120.00112 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99535 * 180.02562 * 4 3 2 7 7 C 1.38962 * 119.99769 * 185.07776 * 6 4 3 8 8 C 1.39557 * 120.52233 * 174.94262 * 7 6 4 9 9 C 1.38169 * 118.33167 * 179.97438 * 8 7 6 10 10 N 1.32533 * 119.18843 * 359.74862 * 9 8 7 11 11 C 1.31767 * 120.99589 * 0.50953 * 10 9 8 12 12 C 1.50701 * 119.08442 * 179.75988 * 11 10 9 13 13 C 1.53005 * 115.54601 * 214.14353 * 12 11 10 14 14 C 1.52995 * 117.50185 * 68.47650 * 12 11 10 15 15 C 1.52992 * 117.50029 * 359.81545 * 12 11 10 16 16 N 1.31770 * 121.83058 * 359.47653 * 11 10 9 17 17 C 1.41305 * 107.15895 * 180.24897 * 3 2 1 18 18 N 1.30443 * 108.02471 * 359.61134 * 17 3 2 19 19 N 1.34251 * 126.29490 * 180.02562 * 2 1 3 20 20 C 1.46502 * 125.75299 * 359.96559 * 19 2 1 21 21 C 1.50694 * 109.47579 * 89.99122 * 20 19 2 22 22 H 1.07999 * 119.99723 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00015 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00458 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99963 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46991 * 90.00438 * 25 23 21 27 27 H 1.48499 * 109.47515 * 210.00819 * 25 23 21 28 28 H 1.48503 * 109.47352 * 330.00473 * 25 23 21 29 29 H 1.08999 * 109.47614 * 89.97833 * 1 2 3 30 30 H 1.09000 * 109.47181 * 209.97863 * 1 2 3 31 31 H 1.09003 * 109.47586 * 329.97876 * 1 2 3 32 32 H 0.97000 * 120.00685 * 5.08481 * 6 4 3 33 33 H 1.08002 * 120.83571 * 0.02562 * 8 7 6 34 34 H 1.08000 * 120.40028 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.46720 * 85.58565 * 13 12 11 36 36 H 1.09003 * 109.46713 * 205.58183 * 13 12 11 37 37 H 1.08996 * 109.47603 * 325.58303 * 13 12 11 38 38 H 1.09005 * 117.49883 * 359.97438 * 14 12 11 39 39 H 1.08995 * 117.50327 * 145.01791 * 14 12 11 40 40 H 1.09001 * 117.49867 * 214.98302 * 15 12 11 41 41 H 1.08997 * 117.50026 * 359.97438 * 15 12 11 42 42 H 1.08009 * 125.98782 * 179.76980 * 17 3 2 43 43 H 1.08998 * 109.46845 * 209.99593 * 20 19 2 44 44 H 1.09000 * 109.46703 * 329.98985 * 20 19 2 45 45 H 0.96991 * 120.00620 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1129 0.0000 4 6 1.8862 2.5202 -0.0005 5 8 0.7000 2.7877 -0.0006 6 7 2.8004 3.5104 -0.0010 7 6 2.3909 4.8341 0.1050 8 6 3.3306 5.8604 0.2115 9 6 2.8733 7.1602 0.3140 10 7 1.5679 7.3888 0.3029 11 6 0.7060 6.3968 0.2060 12 6 -0.7690 6.7056 0.2029 13 6 -1.6626 5.6637 0.8789 14 6 -1.3350 7.4381 -1.0152 15 6 -1.1837 8.1737 0.3186 16 7 1.0982 5.1428 0.1061 17 6 3.6592 0.6498 -0.0059 18 7 3.6341 -0.6543 -0.0007 19 7 2.3017 -1.0820 -0.0005 20 6 1.8501 -2.4757 -0.0004 21 6 1.6944 -2.9535 -1.4211 22 1 1.9105 -2.2859 -2.2420 23 6 1.2769 -4.2432 -1.6728 24 7 1.0141 -5.0563 -0.6732 25 14 1.0845 -4.8356 -3.4339 26 1 2.3656 -5.4238 -3.9010 27 1 0.0156 -5.8645 -3.4962 28 1 0.7194 -3.6894 -4.3047 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 3.7442 3.2993 -0.0754 33 1 4.3888 5.6441 0.2128 34 1 3.5713 7.9801 0.3975 35 1 -1.7098 5.8650 1.9491 36 1 -2.6655 5.7152 0.4549 37 1 -1.2492 4.6687 0.7142 38 1 -0.6403 7.6971 -1.8143 39 1 -2.3440 7.1781 -1.3349 40 1 -2.0933 8.3973 0.8759 41 1 -0.3897 8.9163 0.3973 42 1 4.5452 1.2675 -0.0109 43 1 2.5851 -3.0957 0.5130 44 1 0.8918 -2.5471 0.5141 45 1 0.7201 -5.9635 -0.8502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890244318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 99.509602 kcal Electronic energy + Delta-G solvation = -28663.221933 eV Core-core repulsion = 24682.917400 eV Total energy + Delta-G solvation = -3980.304533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.54360 -42.10672 -40.23820 -38.53479 -36.30626 -35.82474 -34.14299 -33.79498 -32.81025 -31.92560 -29.47925 -29.25426 -28.30086 -25.96348 -25.68899 -24.95018 -23.43335 -23.15622 -21.55419 -21.34740 -20.50576 -18.96326 -18.83325 -18.40166 -17.75282 -16.87065 -16.69010 -16.55603 -16.33337 -16.27039 -15.99613 -15.59718 -15.36133 -14.95791 -14.78621 -14.63723 -14.31823 -14.12359 -13.97622 -13.72302 -13.60049 -13.22353 -13.11780 -13.00345 -12.83624 -12.72297 -12.61729 -12.33111 -12.31215 -11.87497 -11.84104 -11.68115 -11.45227 -11.21226 -11.06820 -10.77778 -10.59343 -10.31575 -9.90229 -9.76171 -9.48789 -8.39642 -6.55938 -0.10690 0.19338 0.70469 1.30206 1.36284 1.37667 1.45816 1.52430 1.90711 2.31052 2.39238 2.70452 2.83685 2.92929 3.05878 3.35199 3.68205 3.70384 3.76432 3.81777 4.00838 4.09101 4.10236 4.17632 4.27903 4.39864 4.48696 4.54806 4.59652 4.76109 4.77241 4.86854 4.88463 4.93417 5.00651 5.04527 5.05405 5.12483 5.18713 5.31959 5.45816 5.47293 5.59817 5.63218 5.72747 5.89704 5.98987 6.45794 6.52669 6.78964 7.11444 7.15345 7.36250 8.68376 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.002407 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.774810 B =11631.441504 C =12493.216646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.152 3.848 3 C -0.331 4.331 4 C 0.596 3.404 5 O -0.510 6.510 6 N -0.639 5.639 7 C 0.387 3.613 8 C -0.256 4.256 9 C 0.166 3.834 10 N -0.555 5.555 11 C 0.364 3.636 12 C -0.097 4.097 13 C -0.104 4.104 14 C -0.150 4.150 15 C -0.132 4.132 16 N -0.540 5.540 17 C 0.082 3.918 18 N -0.333 5.333 19 N -0.337 5.337 20 C 0.267 3.733 21 C -0.555 4.555 22 H 0.052 0.948 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.970 3.030 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.436 0.564 33 H 0.190 0.810 34 H 0.212 0.788 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.233 0.767 43 H 0.033 0.967 44 H 0.051 0.949 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 25.991 2.432 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 C -0.347 4.347 4 C 0.386 3.614 5 O -0.383 6.383 6 N -0.287 5.287 7 C 0.148 3.852 8 C -0.282 4.282 9 C 0.003 3.997 10 N -0.272 5.272 11 C 0.096 3.904 12 C -0.099 4.099 13 C -0.162 4.162 14 C -0.188 4.188 15 C -0.169 4.169 16 N -0.261 5.261 17 C -0.105 4.105 18 N -0.152 5.152 19 N -0.113 5.113 20 C 0.148 3.852 21 C -0.593 4.593 22 H 0.070 0.930 23 C -0.177 4.177 24 N -0.554 5.554 25 Si 0.794 3.206 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.277 0.723 33 H 0.207 0.793 34 H 0.229 0.771 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.249 0.751 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.402 24.765 2.504 24.931 hybrid contribution 0.937 -0.798 -0.782 1.458 sum 2.339 23.967 1.722 24.143 Atomic orbital electron populations 1.20558 0.85936 1.04082 1.03951 1.21924 0.95877 0.86718 0.93919 1.19747 0.93637 0.92046 1.29245 1.17388 0.85282 0.83735 0.75035 1.90810 1.17066 1.83702 1.46684 1.43195 1.12055 1.02098 1.71347 1.19061 0.89888 0.85992 0.90291 1.22663 1.02702 0.93028 1.09767 1.23709 0.91519 0.96636 0.87878 1.68145 1.04359 1.36460 1.18210 1.22159 0.95956 0.83006 0.89308 1.19881 0.87151 0.96576 1.06306 1.21206 0.98033 0.97523 0.99407 1.23164 1.02331 1.02070 0.91225 1.23141 1.03485 0.91472 0.98818 1.68052 1.16950 1.22568 1.18531 1.24598 0.97477 0.91669 0.96723 1.77112 0.98188 1.14415 1.25502 1.49121 1.03424 1.07763 1.51040 1.19387 0.95363 0.72252 0.98178 1.21378 1.47973 0.98462 0.91532 0.92976 1.25715 0.93822 0.95964 1.02213 1.69985 1.44808 1.07601 1.33026 0.85362 0.78362 0.78214 0.78631 1.19743 1.19649 1.19473 0.89873 0.90929 0.88103 0.72252 0.79316 0.77140 0.92386 0.90575 0.92725 0.89608 0.86661 0.86472 0.87451 0.75072 0.94886 0.93154 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.19 9.57 71.24 0.68 -2.51 16 2 C 0.15 6.09 7.01 42.15 0.30 6.38 16 3 C -0.33 -11.29 6.13 -20.15 -0.12 -11.41 16 4 C 0.60 18.90 7.77 86.65 0.67 19.57 16 5 O -0.51 -19.38 13.15 -4.00 -0.05 -19.44 16 6 N -0.64 -14.46 5.37 -310.99 -1.67 -16.13 16 7 C 0.39 9.32 7.45 133.03 0.99 10.31 16 8 C -0.26 -3.81 10.04 22.57 0.23 -3.58 16 9 C 0.17 2.48 11.29 84.57 0.95 3.43 16 10 N -0.55 -12.18 9.30 -188.08 -1.75 -13.93 16 11 C 0.36 9.67 7.12 138.77 0.99 10.66 16 12 C -0.10 -2.25 2.61 -52.93 -0.14 -2.38 16 13 C -0.10 -2.47 9.79 71.98 0.70 -1.77 16 14 C -0.15 -2.80 9.88 30.61 0.30 -2.50 16 15 C -0.13 -2.23 9.73 30.61 0.30 -1.93 16 16 N -0.54 -16.29 7.04 -185.22 -1.30 -17.60 16 17 C 0.08 2.52 11.51 85.65 0.99 3.51 16 18 N -0.33 -13.68 12.50 -56.26 -0.70 -14.39 16 19 N -0.34 -15.17 3.56 -336.69 -1.20 -16.37 16 20 C 0.27 13.58 5.97 85.63 0.51 14.09 16 21 C -0.56 -30.27 9.39 25.60 0.24 -30.03 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 23 C 0.02 1.31 5.46 84.65 0.46 1.77 16 24 N -0.92 -50.92 13.29 21.45 0.28 -50.64 16 25 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.07 2.63 7.05 -2.39 -0.02 2.61 16 31 H 0.10 3.52 6.50 -2.39 -0.02 3.50 16 32 H 0.44 5.93 7.69 -92.71 -0.71 5.22 16 33 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.21 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.48 7.90 -2.39 -0.02 1.46 16 37 H 0.05 1.69 7.37 -2.39 -0.02 1.67 16 38 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.12 1.80 8.05 -2.39 -0.02 1.78 16 40 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.11 1.86 7.50 -2.39 -0.02 1.84 16 42 H 0.23 4.02 7.51 -2.91 -0.02 4.00 16 43 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 2.58 7.02 -2.39 -0.02 2.56 16 45 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -74.54 385.32 4.01 -70.53 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.33 Total: 19.94 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 8.05 Total: 13.61 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -6.34 Total: -129.05 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -74.54 4.01 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890244318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.035 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds