Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38076 * 126.28930 * 2 1 4 4 C 1.47375 * 126.42148 * 0.02562 * 3 2 1 5 5 O 1.21591 * 120.00045 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00087 * 179.97438 * 4 3 2 7 7 C 1.38836 * 120.00321 * 179.97438 * 6 4 3 8 8 N 1.32441 * 119.20408 * 0.02562 * 7 6 4 9 9 C 1.32267 * 120.74659 * 179.97438 * 8 7 6 10 10 C 1.50696 * 120.40628 * 180.02562 * 9 8 7 11 11 C 1.38634 * 119.18416 * 0.02562 * 9 8 7 12 12 C 1.38590 * 118.54561 * 359.97438 * 11 9 8 13 13 C 1.50690 * 120.40715 * 179.97438 * 12 11 9 14 14 C 1.53000 * 117.50063 * 85.00228 * 13 12 11 15 15 C 1.53002 * 60.02940 * 252.49714 * 14 13 12 16 16 N 1.32286 * 119.18208 * 0.25394 * 12 11 9 17 17 C 1.41308 * 107.15763 * 180.26640 * 3 2 1 18 18 N 1.30445 * 108.02483 * 359.55583 * 17 3 2 19 19 N 1.34254 * 126.29359 * 180.02562 * 2 1 3 20 20 C 1.46500 * 125.75370 * 359.95301 * 19 2 1 21 21 C 1.50700 * 109.46797 * 90.00483 * 20 19 2 22 22 H 1.08001 * 120.00288 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00024 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00010 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00039 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46920 * 90.00155 * 25 23 21 27 27 H 1.48500 * 109.47302 * 209.99804 * 25 23 21 28 28 H 1.48496 * 109.47220 * 330.00257 * 25 23 21 29 29 H 1.08996 * 109.47548 * 89.97154 * 1 2 3 30 30 H 1.09001 * 109.46749 * 209.97168 * 1 2 3 31 31 H 1.08994 * 109.46742 * 329.96824 * 1 2 3 32 32 H 0.97000 * 119.99750 * 0.02562 * 6 4 3 33 33 H 1.08999 * 109.47186 * 269.98504 * 10 9 8 34 34 H 1.09009 * 109.47397 * 29.98031 * 10 9 8 35 35 H 1.08993 * 109.47350 * 149.97858 * 10 9 8 36 36 H 1.08004 * 120.72435 * 179.97438 * 11 9 8 37 37 H 1.09007 * 115.55011 * 230.67017 * 13 12 11 38 38 H 1.09002 * 117.49833 * 359.97438 * 14 13 12 39 39 H 1.09002 * 117.49953 * 144.99860 * 14 13 12 40 40 H 1.09000 * 117.49996 * 107.50493 * 15 14 13 41 41 H 1.08999 * 117.49664 * 252.51862 * 15 14 13 42 42 H 1.08006 * 125.99098 * 179.71861 * 17 3 2 43 43 H 1.08991 * 109.47385 * 210.00562 * 20 19 2 44 44 H 1.09003 * 109.47065 * 330.01139 * 20 19 2 45 45 H 0.96999 * 119.99781 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3243 1.1129 0.0000 4 6 1.8863 2.5201 0.0005 5 8 0.7002 2.7877 0.0006 6 7 2.8005 3.5104 0.0010 7 6 2.3879 4.8361 0.0009 8 7 1.0920 5.1096 0.0010 9 6 0.6651 6.3615 0.0015 10 6 -0.8112 6.6639 0.0021 11 6 1.5925 7.3919 0.0014 12 6 2.9405 7.0698 0.0014 13 6 3.9844 8.1565 0.0007 14 6 4.3887 8.7486 1.3523 15 6 3.5350 9.5689 0.3832 16 7 3.2994 5.7966 -0.0037 17 6 3.6593 0.6498 -0.0063 18 7 3.6341 -0.6544 -0.0002 19 7 2.3017 -1.0821 -0.0005 20 6 1.8502 -2.4758 -0.0001 21 6 1.6945 -2.9536 -1.4209 22 1 1.9108 -2.2862 -2.2419 23 6 1.2761 -4.2430 -1.6725 24 7 1.0122 -5.0557 -0.6728 25 14 1.0825 -4.8352 -3.4336 26 1 2.3630 -5.4241 -3.9014 27 1 0.0129 -5.8635 -3.4953 28 1 0.7177 -3.6887 -4.3041 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3632 0.8897 0.5143 32 1 3.7467 3.2970 0.0006 33 1 -1.1674 6.7373 -1.0254 34 1 -1.3456 5.8646 0.5156 35 1 -0.9884 7.6083 0.5165 36 1 1.2716 8.4232 0.0013 37 1 4.7595 8.0634 -0.7601 38 1 3.8993 8.3523 2.2420 39 1 5.4298 9.0450 1.4808 40 1 2.4843 9.7121 0.6353 41 1 4.0146 10.4048 -0.1262 42 1 4.5453 1.2674 -0.0122 43 1 2.5850 -3.0957 0.5133 44 1 0.8918 -2.5470 0.5142 45 1 0.7182 -5.9629 -0.8499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890991694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 120.383791 kcal Electronic energy + Delta-G solvation = -28278.919755 eV Core-core repulsion = 24299.520395 eV Total energy + Delta-G solvation = -3979.399360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49429 -40.79689 -38.97127 -37.56560 -35.19567 -34.00832 -33.82125 -32.16449 -31.58775 -30.93280 -28.66996 -27.54431 -26.72566 -25.29136 -23.96768 -23.17917 -22.71030 -22.05504 -21.07561 -19.78377 -19.21910 -17.90679 -17.42108 -16.85487 -16.54904 -16.32857 -15.83644 -15.41189 -15.12240 -14.74706 -14.56241 -14.49199 -14.16471 -13.89540 -13.55507 -13.23860 -13.13125 -12.73745 -12.64996 -12.46473 -12.26156 -12.13705 -11.98124 -11.82483 -11.53990 -11.50849 -11.14979 -11.11802 -10.91153 -10.89945 -10.57316 -10.38330 -10.24230 -10.18729 -9.96121 -9.60154 -8.96955 -8.72672 -8.69402 -8.63942 -8.00065 -6.35341 -4.43240 0.83916 0.97867 2.12126 2.52238 2.72499 3.17581 3.23762 3.24786 3.29080 3.36995 3.58341 3.77416 3.99574 4.08439 4.23053 4.37590 4.44358 4.62826 4.76567 4.91534 4.97959 5.03270 5.07255 5.17773 5.19202 5.24003 5.38249 5.40765 5.44816 5.56120 5.65641 5.68423 5.73307 5.73495 5.86013 6.02746 6.10020 6.38582 6.48327 6.53500 6.73626 6.87580 7.03518 7.09171 7.20782 7.53169 7.72996 7.75168 8.18325 8.31639 8.45245 8.62003 9.23783 10.72888 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.002150 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.023586 B =13018.606468 C =13559.677194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.172 3.828 3 C -0.333 4.333 4 C 0.599 3.401 5 O -0.482 6.482 6 N -0.639 5.639 7 C 0.556 3.444 8 N -0.504 5.504 9 C 0.205 3.795 10 C -0.105 4.105 11 C -0.270 4.270 12 C 0.237 3.763 13 C -0.112 4.112 14 C -0.158 4.158 15 C -0.169 4.169 16 N -0.555 5.555 17 C 0.059 3.941 18 N -0.292 5.292 19 N -0.312 5.312 20 C 0.251 3.749 21 C -0.540 4.540 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.421 0.579 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.178 0.822 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 27.260 3.380 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.035 3.965 3 C -0.349 4.349 4 C 0.389 3.611 5 O -0.352 6.352 6 N -0.287 5.287 7 C 0.200 3.800 8 N -0.225 5.225 9 C 0.057 3.943 10 C -0.162 4.162 11 C -0.294 4.294 12 C 0.090 3.910 13 C -0.130 4.130 14 C -0.195 4.195 15 C -0.206 4.206 16 N -0.276 5.276 17 C -0.128 4.128 18 N -0.111 5.111 19 N -0.088 5.088 20 C 0.133 3.867 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.259 0.741 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.162 0.838 37 H 0.145 0.855 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.195 0.805 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.795 24.837 3.433 25.138 hybrid contribution 0.009 0.904 -1.018 1.362 sum 1.804 25.741 2.414 25.917 Atomic orbital electron populations 1.20602 0.86590 1.03950 1.04100 1.21460 0.95010 0.86370 0.93707 1.19448 0.93423 0.91466 1.30545 1.17463 0.84996 0.83419 0.75258 1.90812 1.15591 1.83111 1.45703 1.43165 1.12028 1.01184 1.72366 1.19386 0.85026 0.86120 0.89469 1.68408 1.14771 1.21473 1.17840 1.21709 0.97536 0.87308 0.87741 1.20767 0.88840 1.02867 1.03722 1.22328 0.94035 1.01726 1.11330 1.20348 0.92021 0.89643 0.88949 1.20792 0.99781 0.91199 1.01267 1.22982 1.01162 1.02496 0.92907 1.23118 1.01139 0.93141 1.03218 1.67464 1.38471 1.00398 1.21275 1.23779 0.96245 0.92732 1.00054 1.77165 0.98576 1.12135 1.23254 1.49404 1.02462 1.08352 1.48610 1.19889 0.96495 0.70733 0.99533 1.21237 1.47513 0.98187 0.90943 0.91634 1.24923 0.94411 0.95993 0.98331 1.69911 1.44428 1.07179 1.31122 0.86316 0.78104 0.78645 0.83425 1.20231 1.20772 1.19595 0.89626 0.90675 0.88748 0.74147 0.89638 0.89530 0.90314 0.83807 0.85539 0.88567 0.87837 0.88072 0.87779 0.80536 0.92403 0.92442 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.57 36.01 0.34 -1.34 16 2 C 0.17 3.48 7.01 -81.59 -0.57 2.90 16 3 C -0.33 -6.09 6.13 -105.07 -0.64 -6.74 16 4 C 0.60 10.44 7.77 -12.54 -0.10 10.34 16 5 O -0.48 -9.42 13.03 5.29 0.07 -9.35 16 6 N -0.64 -9.43 5.39 -14.07 -0.08 -9.50 16 7 C 0.56 8.49 8.38 -322.35 -2.70 5.79 16 8 N -0.50 -7.94 7.81 -10.07 -0.08 -8.01 16 9 C 0.21 2.48 6.82 -82.26 -0.56 1.92 16 10 C -0.10 -0.90 10.22 36.00 0.37 -0.53 16 11 C -0.27 -2.69 9.11 -39.31 -0.36 -3.05 16 12 C 0.24 2.62 6.50 -82.27 -0.53 2.08 16 13 C -0.11 -0.87 6.25 -91.74 -0.57 -1.44 16 14 C -0.16 -0.99 10.23 -26.73 -0.27 -1.26 16 15 C -0.17 -0.88 9.83 -26.69 -0.26 -1.14 16 16 N -0.55 -7.49 10.39 -10.08 -0.10 -7.59 16 17 C 0.06 1.03 11.50 -16.97 -0.20 0.83 16 18 N -0.29 -6.22 12.50 30.87 0.39 -5.83 16 19 N -0.31 -6.98 3.56 -57.77 -0.21 -7.18 16 20 C 0.25 6.18 5.97 -5.19 -0.03 6.15 16 21 C -0.54 -14.47 9.39 -34.44 -0.32 -14.80 16 22 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.46 13.29 55.43 0.74 -23.72 16 25 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 31 H 0.09 1.61 6.50 -51.93 -0.34 1.27 16 32 H 0.42 5.03 7.77 -40.82 -0.32 4.71 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.14 0.96 6.39 -52.48 -0.34 0.62 16 37 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.47 6.47 -51.93 -0.34 0.13 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.18 2.19 7.50 -52.48 -0.39 1.80 16 43 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -32.79 384.99 -10.80 -43.59 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.80 Total: 4.61 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -6.51 Total: 1.42 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.66 Total: -61.84 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.79 -10.80 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890991694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.972 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds