Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40073 * 125.97492 * 180.14591 * 4 3 2 6 6 C 1.34777 * 120.00360 * 0.22743 * 5 4 3 7 7 O 1.21575 * 119.99455 * 359.97438 * 6 5 4 8 8 C 1.47802 * 120.00293 * 180.02562 * 6 5 4 9 9 C 1.39557 * 119.59432 * 180.02562 * 8 6 5 10 10 C 1.38197 * 118.89150 * 180.02562 * 9 8 6 11 11 C 1.39470 * 118.50472 * 359.97438 * 10 9 8 12 12 C 1.39194 * 119.63491 * 359.90598 * 11 10 9 13 13 N 1.31848 * 120.09084 * 359.92376 * 12 11 10 14 14 C 1.50731 * 121.19504 * 180.28536 * 12 11 10 15 15 C 1.52842 * 110.45408 * 339.33072 * 14 12 11 16 16 C 1.53419 * 108.89307 * 51.38240 * 15 14 12 17 17 N 1.39208 * 119.28476 * 179.68765 * 11 10 9 18 18 N 1.31239 * 108.05045 * 0.36163 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46498 * 125.97410 * 359.96275 * 19 2 1 21 21 C 1.50702 * 109.47036 * 90.00121 * 20 19 2 22 22 H 1.08000 * 120.00135 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99820 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00006 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00133 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47361 * 89.99884 * 25 23 21 27 27 H 1.48500 * 109.47062 * 209.99820 * 25 23 21 28 28 H 1.48503 * 109.47091 * 329.99515 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07996 * 126.06578 * 0.03842 * 3 2 1 33 33 H 0.97007 * 119.99770 * 180.23253 * 5 4 3 34 34 H 1.07994 * 120.55439 * 0.02562 * 9 8 6 35 35 H 1.08010 * 120.74684 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.30549 * 99.63198 * 14 12 11 37 37 H 1.09006 * 109.30224 * 219.23000 * 14 12 11 38 38 H 1.08994 * 109.56302 * 171.20761 * 15 14 12 39 39 H 1.08997 * 109.56639 * 291.44320 * 15 14 12 40 40 H 1.09000 * 109.79880 * 56.30608 * 16 15 14 41 41 H 1.09002 * 109.79396 * 177.15644 * 16 15 14 42 42 H 0.97001 * 120.53182 * 346.64759 * 17 11 10 43 43 H 1.08996 * 109.47070 * 210.00160 * 20 19 2 44 44 H 1.09004 * 109.46994 * 330.00070 * 20 19 2 45 45 H 0.97006 * 120.00197 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7729 1.4743 0.0057 6 6 4.6362 2.8151 0.0121 7 8 3.5271 3.3130 0.0142 8 6 5.8346 3.6802 0.0153 9 6 5.6832 5.0675 0.0224 10 6 6.8136 5.8626 0.0247 11 6 8.0631 5.2430 0.0205 12 6 8.1423 3.8533 0.0160 13 7 7.0409 3.1284 0.0173 14 6 9.4739 3.1472 0.0178 15 6 10.5751 4.0824 -0.4811 16 6 10.5064 5.3962 0.3083 17 7 9.2125 6.0283 0.0162 18 7 3.6337 -0.6579 -0.0045 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0127 21 6 1.6943 -2.9553 -1.4359 22 1 1.9099 -2.2834 -2.2535 23 6 1.2767 -4.2437 -1.6941 24 7 1.1404 -4.6543 -2.9360 25 14 0.9031 -5.4056 -0.2799 26 1 -0.5278 -5.2823 0.0974 27 1 1.1860 -6.8020 -0.6985 28 1 1.7543 -5.0563 0.8858 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 0.0006 33 1 5.6579 1.0770 0.0036 34 1 4.6991 5.5123 0.0259 35 1 6.7312 6.9395 0.0298 36 1 9.7085 2.8228 1.0316 37 1 9.4210 2.2766 -0.6360 38 1 11.5478 3.6151 -0.3283 39 1 10.4296 4.2842 -1.5423 40 1 10.5839 5.1900 1.3758 41 1 11.3175 6.0554 -0.0009 42 1 9.1601 6.9775 -0.1768 43 1 2.5847 -3.1072 0.4976 44 1 0.8915 -2.5584 0.5013 45 1 0.8463 -5.5607 -3.1177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897405772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = 84.131518 kcal Electronic energy + Delta-G solvation = -28196.306723 eV Core-core repulsion = 24215.335346 eV Total energy + Delta-G solvation = -3980.971377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15608 -40.57877 -39.12751 -37.16372 -34.87605 -34.18709 -33.24658 -31.65428 -31.21059 -31.10107 -30.73640 -27.27322 -26.34664 -26.03348 -24.43401 -23.66809 -22.71967 -21.74603 -20.36191 -19.69203 -19.34274 -17.98070 -17.49368 -17.07130 -16.93151 -16.08903 -15.51821 -15.45495 -15.13693 -15.09580 -14.66667 -14.42904 -14.25216 -14.00764 -13.79453 -13.59482 -13.42388 -13.26313 -13.08505 -12.53280 -12.35764 -12.25290 -12.07025 -11.95658 -11.59105 -11.52188 -11.48637 -11.14019 -10.99970 -10.77172 -10.51169 -10.11627 -9.90696 -9.85601 -9.70527 -9.53792 -9.49906 -8.74877 -8.01344 -7.89239 -7.39219 -6.22511 -4.25397 0.63490 0.98540 2.45890 2.77447 2.86427 2.91550 3.17811 3.26325 3.26999 3.53775 3.71242 3.93997 3.95069 4.22603 4.25078 4.41153 4.48099 4.53014 4.75433 4.79704 4.91159 5.05737 5.07457 5.19584 5.27176 5.40780 5.46784 5.51526 5.66233 5.70972 5.71894 5.83667 5.94510 6.07898 6.14668 6.27782 6.43401 6.51079 6.61583 6.62441 6.67531 6.80546 7.07165 7.33104 7.47611 7.55802 7.77565 7.92034 8.33431 8.36141 8.65526 8.83796 9.32771 10.89981 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019506 B = 0.002168 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.138014 B =12914.137347 C =13933.148190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.286 4.286 4 C 0.269 3.731 5 N -0.614 5.614 6 C 0.584 3.416 7 O -0.517 6.517 8 C 0.030 3.970 9 C -0.061 4.061 10 C -0.164 4.164 11 C 0.192 3.808 12 C 0.066 3.934 13 N -0.421 5.421 14 C -0.063 4.063 15 C -0.139 4.139 16 C 0.117 3.883 17 N -0.738 5.738 18 N -0.315 5.315 19 N -0.317 5.317 20 C 0.232 3.768 21 C -0.540 4.540 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.887 5.887 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.420 0.580 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.405 0.595 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.324 23.125 8.088 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.317 4.317 4 C 0.016 3.984 5 N -0.261 5.261 6 C 0.370 3.630 7 O -0.391 6.391 8 C -0.111 4.111 9 C -0.083 4.083 10 C -0.193 4.193 11 C 0.084 3.916 12 C -0.081 4.081 13 N -0.133 5.133 14 C -0.101 4.101 15 C -0.177 4.177 16 C -0.007 4.007 17 N -0.367 5.367 18 N -0.146 5.146 19 N -0.099 5.099 20 C 0.112 3.888 21 C -0.578 4.578 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.524 5.524 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.257 0.743 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.240 0.760 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.374 21.126 8.012 28.502 hybrid contribution -0.226 1.000 0.397 1.099 sum 17.148 22.126 8.408 29.228 Atomic orbital electron populations 1.20401 0.87833 1.04172 1.02426 1.21056 0.94901 0.86984 1.00794 1.21281 0.89698 0.99862 1.20891 1.18981 0.87276 0.89552 1.02639 1.42244 1.08018 1.04781 1.71019 1.17649 0.87795 0.81047 0.76551 1.90723 1.25160 1.74132 1.49076 1.20504 0.90655 0.91870 1.08056 1.21851 1.00078 0.92663 0.93658 1.21082 0.90350 1.00556 1.07352 1.18699 0.87596 0.91676 0.93584 1.20752 0.94319 0.88250 1.04740 1.67183 0.97565 1.40576 1.07951 1.20257 0.88515 0.98252 1.03099 1.21926 0.99385 0.95677 1.00752 1.21679 0.84651 0.94842 0.99506 1.44594 1.04277 1.10374 1.77498 1.77290 0.99241 1.08642 1.29397 1.48521 1.01296 1.06984 1.53112 1.19986 0.95271 0.73819 0.99674 1.21195 1.47225 0.99011 0.90392 0.90077 1.24812 0.94530 0.97454 0.95767 1.69878 1.45731 1.18305 1.18466 0.86904 0.79413 0.80991 0.82855 1.19632 1.20532 1.18774 0.91104 0.89866 0.90360 0.82093 0.74332 0.83211 0.84222 0.89901 0.89069 0.89585 0.90853 0.91707 0.89737 0.75961 0.93203 0.93664 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 2 C 0.09 2.00 6.92 -82.28 -0.57 1.43 16 3 C -0.29 -6.09 9.52 -39.83 -0.38 -6.47 16 4 C 0.27 5.81 8.11 -154.45 -1.25 4.55 16 5 N -0.61 -11.06 5.43 -12.00 -0.07 -11.12 16 6 C 0.58 9.82 7.77 -12.35 -0.10 9.73 16 7 O -0.52 -9.63 13.44 5.30 0.07 -9.56 16 8 C 0.03 0.41 6.74 -83.11 -0.56 -0.15 16 9 C -0.06 -0.67 9.63 -39.10 -0.38 -1.05 16 10 C -0.16 -1.38 9.99 -39.14 -0.39 -1.77 16 11 C 0.19 1.63 6.48 -83.70 -0.54 1.09 16 12 C 0.07 0.67 6.67 -82.22 -0.55 0.12 16 13 N -0.42 -5.40 9.39 -5.90 -0.06 -5.45 16 14 C -0.06 -0.47 6.00 -27.95 -0.17 -0.64 16 15 C -0.14 -0.65 6.10 -26.60 -0.16 -0.81 16 16 C 0.12 0.44 7.11 -3.59 -0.03 0.42 16 17 N -0.74 -3.88 5.77 -58.01 -0.34 -4.21 16 18 N -0.32 -7.56 12.59 31.43 0.40 -7.16 16 19 N -0.32 -7.61 3.59 -58.33 -0.21 -7.82 16 20 C 0.23 5.71 4.88 -5.19 -0.03 5.68 16 21 C -0.54 -15.40 9.94 -34.44 -0.34 -15.74 16 22 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 23 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 24 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 25 Si 0.87 20.42 27.47 -169.99 -4.67 15.75 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.16 3.29 5.91 -52.49 -0.31 2.98 16 33 H 0.42 6.85 8.14 -40.82 -0.33 6.52 16 34 H 0.15 1.54 7.64 -52.49 -0.40 1.14 16 35 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.40 1.28 8.86 -40.82 -0.36 0.92 16 43 H 0.05 1.24 7.20 -51.93 -0.37 0.86 16 44 H 0.05 1.02 7.08 -51.93 -0.37 0.65 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -35.32 375.71 -9.55 -44.87 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.94 Total: 7.61 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -5.18 Total: -2.67 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.50 Total: -61.66 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.32 -9.55 -44.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897405772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.000 kcal (2) G-P(sol) polarization free energy of solvation -35.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds